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{{UBERON
{{UBERON
|id=UBERON:0003714
|alt_id=
|name=neural tissue
|namespace=
|def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009
|is_a=UBERON:0000073;;UBERON:0000479
|synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642]
|comment=FMA definition includes vasculature
|comment=FMA definition includes vasculature
|alt_id=
|disjoint_from=UBERON:0004755
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=UBERON:0004755
|has_quality=
|has_quality=
|id=UBERON:0003714
|is_a=UBERON:0000479
|is_obsolete=
|located_in=
|located_in=
|name=neural tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001016
|part_of=UBERON:0001016
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string
|subset=
|synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642]
|union_of=
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009
}}
}}

Latest revision as of 17:41, 12 September 2014

Name:neural tissue
Namespace:FANTOM
Definition:"Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
Xrefs:
links:

AAO:0000325
AEO:0000123
EHDAA2:0003123
FMA:9642
GAID:609
MESH:A.08.561
ncithesaurus:Nervous_Tissue
OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ

SCTID:91728009
Synonyms: "nerve tissue" EXACT [FMA:9642]
"nervous tissue" EXACT [FMA:9642]
"portion of neural tissue" EXACT [FMA:9642]
Comments:FMA definition includes vasculature

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue)
disjoint_from:UBERON:0004755(skeletal tissue)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0000045 (ganglion),UBERON:0001810 (nerve plexus)
disjoint from:UBERON:0001013 (adipose tissue),UBERON:0002385 (muscle tissue)
derives from:FF:0102912 (neuroepithelioma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003714 (neural tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.75e-130FFCP PHASE2:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8p@chr2:212586166..212586168, -
1.75e-130FFCP PHASE1:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8p@chr2:212586166..212586168, -
1.55e-98FFCP PHASE2:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666edp@chr1:21339635..21339636, -
1.55e-98FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666edp@chr12:57628762..57628773, -
1.55e-98FFCP PHASE1:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666edp@chr1:21339635..21339636, -
1.55e-98FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666edp@chr12:57628762..57628773, -
5.22e-79FFCP PHASE2:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4ep@chr8:6081804..6081807, -
5.22e-79FFCP PHASE1:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4ep@chr8:6081804..6081807, -
2.03e-66FFCP PHASE2:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fdp@chr8:27057116..27057118, +
2.03e-66FFCP PHASE1:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fdp@chr8:27057116..27057118, +
2.84e-66FFCP PHASE2:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cdp30@SOX6
2.84e-66FFCP PHASE1:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cdp30@SOX6
7.73e-66FFCP PHASE1:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821p@chr2:29703653..29703657, -
7.73e-66FFCP PHASE2:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821p@chr2:29703653..29703657, -
2.0e-56FFCP PHASE2:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9p@chr11:126010526..126010554, -
2.0e-56FFCP PHASE1:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9p@chr11:126010526..126010554, -
2.74e-50FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53p@chr14:105807545..105807554, +
2.74e-50FFCP PHASE2:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53p9@ADRB3
2.74e-50FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53p@chr18:74702556..74702558, -
2.74e-50FFCP PHASE2:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53p28@KIAA1456
2.74e-50FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53p@chr2:60133192..60133194, -
2.74e-50FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53p@chr18:25161980..25161984, -
2.74e-50FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53p@chr5:149250331..149250335, -
2.74e-50FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53p@chr18:74702556..74702558, -
2.74e-50FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53p@chr18:25161980..25161984, -
2.74e-50FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53p@chr4:127394496..127394500, -
2.74e-50FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53p@chr1:62928606..62928608, +
2.74e-50FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53p@chr5:151258901..151258902, +
2.74e-50FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53p@chr2:188432107..188432111, +
2.74e-50FFCP PHASE2:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53p@chr1:22696471..22696505, -
2.74e-50FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53p@chr5:149250331..149250335, -
2.74e-50FFCP PHASE1:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53p9@ADRB3
2.74e-50FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53p@chr5:151258901..151258902, +
2.74e-50FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53p@chr4:127394496..127394500, -
2.74e-50FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53p@chr7:15056365..15056368, -
2.74e-50FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53p@chr1:62928606..62928608, +
2.74e-50FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53p@chr2:188432107..188432111, +
2.74e-50FFCP PHASE1:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53p@chr1:22696471..22696505, -
2.74e-50FFCP PHASE1:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53p28@KIAA1456
2.74e-50FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53p@chr14:105807545..105807554, +
2.74e-50FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53p@chr2:60133192..60133194, -
2.74e-50FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53p@chr7:15056365..15056368, -
4.52e-50FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_9b72837bdb72ff9efe1143abbdbacba2p12@C16orf62
4.52e-50FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr12:59444098..59444102, +
4.52e-50FFCP PHASE1:Hg19::chr8:37824009..37824022,-#_9b72837bdb72ff9efe1143abbdbacba2p3@ADRB3
4.52e-50FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr11:30166055..30166059, -
4.52e-50FFCP PHASE2:Hg19::chr1:86911063..86911068,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:86911063..86911068, +
4.52e-50FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_9b72837bdb72ff9efe1143abbdbacba2p10@NELL1
4.52e-50FFCP PHASE1:Hg19::chr3:163246025..163246029,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:163246025..163246029, +
4.52e-50FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr16:55740953..55740956, +
4.52e-50FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:172318159..172318160, +
4.52e-50FFCP PHASE1:Hg19::chr4:155299368..155299375,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr4:155299368..155299375, -
4.52e-50FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:126163123..126163134, +
4.52e-50FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:58471631..58471634, +
4.52e-50FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:77789390..77789399, -
4.52e-50FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:171939999..171940009, -
4.52e-50FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr17:12935401..12935405, -
4.52e-50FFCP PHASE1:Hg19::chr14:78718132..78718157,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:78718132..78718157, +
4.52e-50FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:90420477..90420478, -
4.52e-50FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:16317123..16317126, +
4.52e-50FFCP PHASE2:Hg19::chr2:242742205..242742253,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:242742205..242742253, +
4.52e-50FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:203036812..203036840, +
4.52e-50FFCP PHASE2:Hg19::chrX:52006984..52006993,+#_9b72837bdb72ff9efe1143abbdbacba2p@chrX:52006984..52006993, +
4.52e-50FFCP PHASE2:Hg19::chr12:296753..296755,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr12:296753..296755, -
4.52e-50FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr11:57030314..57030346, +
4.52e-50FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr9:74167667..74167687, -
4.52e-50FFCP PHASE2:Hg19::chr8:27041770..27041779,+#_9b72837bdb72ff9efe1143abbdbacba2p4@ENST00000521408
4.52e-50FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_9b72837bdb72ff9efe1143abbdbacba2p18@TGFB3
4.52e-50FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:103200303..103200307, +
4.52e-50FFCP PHASE1:Hg19::chr6:104346803..104346806,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:104346803..104346806, -
4.52e-50FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr4:130221053..130221071, +
4.52e-50FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_9b72837bdb72ff9efe1143abbdbacba2p25@SOX2-OT
4.52e-50FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_9b72837bdb72ff9efe1143abbdbacba2p12@C16orf62
4.52e-50FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:13992334..13992338, -
4.52e-50FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr16:55740953..55740956, +
4.52e-50FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr11:79291300..79291301, +
4.52e-50FFCP PHASE1:Hg19::chr1:169073323..169073334,+#_9b72837bdb72ff9efe1143abbdbacba2p4@ENST00000415637
4.52e-50FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:78718132..78718157, +
4.52e-50FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_9b72837bdb72ff9efe1143abbdbacba2p2@ATAD3B
4.52e-50FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_9b72837bdb72ff9efe1143abbdbacba2p@chrX:131884370..131884375, -
4.52e-50FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr15:36402459..36402465, -
4.52e-50FFCP PHASE2:Hg19::chr2:97626726..97626741,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:97626726..97626741, +
4.52e-50FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:68589926..68589929, +
4.52e-50FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:27750995..27750997, -
4.52e-50FFCP PHASE1:Hg19::chr2:29645795..29645797,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:29645795..29645797, +
4.52e-50FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:154942133..154942148, -
4.52e-50FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:33229308..33229311, -
4.52e-50FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_9b72837bdb72ff9efe1143abbdbacba2p18@TGFB3
4.52e-50FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr18:39859562..39859566, +
4.52e-50FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_9b72837bdb72ff9efe1143abbdbacba2p10@PPAP2A
4.52e-50FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:73444812..73444816, +
4.52e-50FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:165170873..165170919, -
4.52e-50FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr18:39859562..39859566, +
4.52e-50FFCP PHASE1:Hg19::chr7:91509972..91509984,-#_9b72837bdb72ff9efe1143abbdbacba2p3@MTERF
4.52e-50FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:109466651..109466653, +
4.52e-50FFCP PHASE2:Hg19::chr2:240176859..240176904,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:240176859..240176904, -
4.52e-50FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr15:36402459..36402465, -
4.52e-50FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:133945378..133945386, +
4.52e-50FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:68589926..68589929, +
4.52e-50FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_9b72837bdb72ff9efe1143abbdbacba2p59@ANK3










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003714&oldid=3277581"