UBERON:0004291: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0004291
|name=heart rudiment
|namespace=
|def="a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the mid...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0003084;;UBERON:0004139 | |develops_from=UBERON:0003084;;UBERON:0004139 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004291 | |||
|is_a=UBERON:0012275 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=heart rudiment | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO]" xsd:string | |||
|subset= | |||
|synonym="heart cone" EXACT [GO:0003313];;"rudimentary heart" EXACT [ZFA:0000115] | |||
|union_of= | |||
|xref=TAO:0000115;;ZFA:0000115 | |||
}} | }} | ||
Latest revision as of 17:45, 12 September 2014
| Name: | heart rudiment | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313] | ||
| Xrefs: |
| ||
| Synonyms: |
"heart cone" EXACT [GO:0003313] "rudimentary heart" EXACT [ZFA:0000115] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0012275(meso-epithelium) |
|---|---|
| develops_from: | UBERON:0003084(heart primordium),UBERON:0004139(cardiogenic plate) |
Children
| develops from: | UBERON:0005498 (primitive heart tube) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004291 (heart rudiment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.09e-81 | FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_8da83f623ed9d2e1b4882f9c1006bd3f | p@chr1:137747392..137747402, - |
| 1.09e-81 | FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_8da83f623ed9d2e1b4882f9c1006bd3f | p@chr4:147375434..147375447, + |
| 1.09e-81 | FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_8da83f623ed9d2e1b4882f9c1006bd3f | p@chr4:147375434..147375447, + |
| 1.09e-81 | FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_8da83f623ed9d2e1b4882f9c1006bd3f | p@chr9:24549775..24549776, - |
| 1.09e-81 | FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_8da83f623ed9d2e1b4882f9c1006bd3f | p@chr1:137747392..137747402, - |
| 1.09e-81 | FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_8da83f623ed9d2e1b4882f9c1006bd3f | p@chr9:24549775..24549776, - |
| 1.88e-78 | FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_c2098f72f6ae8a74426a0db946c00732 | p@chr4:140980456..140980463, + |
| 1.88e-78 | FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_c2098f72f6ae8a74426a0db946c00732 | p@chr4:140980456..140980463, + |
| 1.92e-77 | FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_e8eaa5279d018a4aaa5b7f41f3a8deef | p@chr1:137737483..137737497, - |
| 1.92e-77 | FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_e8eaa5279d018a4aaa5b7f41f3a8deef | p@chr1:137737483..137737497, - |
| 1.92e-77 | FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_e8eaa5279d018a4aaa5b7f41f3a8deef | p@chr12:113728951..113728965, + |
| 1.92e-77 | FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_e8eaa5279d018a4aaa5b7f41f3a8deef | p@chr12:113728951..113728965, + |
| 2.14e-77 | FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_eeaa5d18c162642731eb77f1a3bf2a1c | p@chr19:36187511..36187515, - |
| 2.14e-77 | FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_eeaa5d18c162642731eb77f1a3bf2a1c | p@chr19:36187511..36187515, - |
| 2.14e-77 | FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_eeaa5d18c162642731eb77f1a3bf2a1c | p@chr4:147375200..147375220, + |
| 2.14e-77 | FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_eeaa5d18c162642731eb77f1a3bf2a1c | p@chr4:147375200..147375220, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_3b0441732889304b94e083d8f566b6da | p@chr1:137744333..137744352, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55568937..55568988, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137745434..137745445, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_3b0441732889304b94e083d8f566b6da | p@chr14:55572120..55572173, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_3b0441732889304b94e083d8f566b6da | p@chr11:58815923..58815951, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137747289..137747313, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137744611..137744621, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55584197..55584239, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55565785..55565833, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137745434..137745445, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55581579..55581620, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55579265..55579297, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137744550..137744565, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_3b0441732889304b94e083d8f566b6da | p@chr1:137747382..137747385, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55584663..55584731, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55584197..55584239, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_3b0441732889304b94e083d8f566b6da | p@chr1:137744333..137744352, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137744636..137744654, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55563577..55563611, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_3b0441732889304b94e083d8f566b6da | p@chr4:147375901..147375913, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_3b0441732889304b94e083d8f566b6da | p@chr19:36193772..36193793, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_3b0441732889304b94e083d8f566b6da | p@chr11:65461897..65461929, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55568790..55568803, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_3b0441732889304b94e083d8f566b6da | p@chr1:137744668..137744681, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_3b0441732889304b94e083d8f566b6da | p2@Mov10l1 |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55571909..55571953, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137744550..137744565, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55563577..55563611, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_3b0441732889304b94e083d8f566b6da | p@chr5:120286706..120286736, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_3b0441732889304b94e083d8f566b6da | p@chr1:137744668..137744681, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_3b0441732889304b94e083d8f566b6da | p@chr4:147375901..147375913, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_3b0441732889304b94e083d8f566b6da | p@chr14:55572120..55572173, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_3b0441732889304b94e083d8f566b6da | p@chr19:36193772..36193793, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137743272..137743307, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55586837..55586880, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_3b0441732889304b94e083d8f566b6da | p2@Mov10l1 |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137747289..137747313, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55584272..55584298, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55568790..55568803, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_3b0441732889304b94e083d8f566b6da | p@chr1:137747953..137747967, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_3b0441732889304b94e083d8f566b6da | p@chr5:120286706..120286736, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_3b0441732889304b94e083d8f566b6da | p@chr11:65461897..65461929, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55584272..55584298, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_3b0441732889304b94e083d8f566b6da | p@chr11:58815923..58815951, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55568737..55568746, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137744636..137744654, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55586837..55586880, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_3b0441732889304b94e083d8f566b6da | p@chr1:137747382..137747385, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55584663..55584731, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55568937..55568988, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137743272..137743307, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55581579..55581620, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_3b0441732889304b94e083d8f566b6da | p@chr1:137744611..137744621, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55571909..55571953, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55579265..55579297, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_3b0441732889304b94e083d8f566b6da | p@chr1:137747953..137747967, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55565785..55565833, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_3b0441732889304b94e083d8f566b6da | p@chr14:55568737..55568746, - |
| 1.2e-73 | FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_7f7f62b007b4b9e45767a23727b73aa2 | p@chr1:137742152..137742184, - |
| 1.2e-73 | FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_7f7f62b007b4b9e45767a23727b73aa2 | p@chr1:137742152..137742184, - |
| 1.46e-72 | FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_43b10297217e2678fda1b7363dc3b4ab | p2@Tnni3 |
| 1.46e-72 | FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_43b10297217e2678fda1b7363dc3b4ab | p2@Tnni3 |
| 1.46e-72 | FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_43b10297217e2678fda1b7363dc3b4ab | p@chr1:137742470..137742481, + |
| 1.46e-72 | FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_43b10297217e2678fda1b7363dc3b4ab | p@chr14:55577329..55577367, - |
| 1.46e-72 | FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_43b10297217e2678fda1b7363dc3b4ab | p@chr16:5431481..5431510, + |
| 1.46e-72 | FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_43b10297217e2678fda1b7363dc3b4ab | p@chr14:55577329..55577367, - |
| 1.46e-72 | FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_43b10297217e2678fda1b7363dc3b4ab | p@chr1:137742470..137742481, + |
| 1.46e-72 | FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_43b10297217e2678fda1b7363dc3b4ab | p@chr16:5431481..5431510, + |
| 1.63e-72 | FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_7d7dea209a25d9f787051e4641653620 | p@chr5:58108164..58108178, + |
| 1.63e-72 | FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_7d7dea209a25d9f787051e4641653620 | p@chr19:36193739..36193752, - |
| 1.63e-72 | FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_7d7dea209a25d9f787051e4641653620 | p@chr10:53062244..53062249, + |
| 1.63e-72 | FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_7d7dea209a25d9f787051e4641653620 | p@chr5:58108164..58108178, + |
| 1.63e-72 | FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_7d7dea209a25d9f787051e4641653620 | p11@Arhgap31 |
| 1.63e-72 | FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_7d7dea209a25d9f787051e4641653620 | p@chr10:53062244..53062249, + |
| 1.63e-72 | FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_7d7dea209a25d9f787051e4641653620 | p1@ENSMUST00000154140 |
| 1.63e-72 | FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_7d7dea209a25d9f787051e4641653620 | p11@Arhgap31 |
| 1.63e-72 | FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_7d7dea209a25d9f787051e4641653620 | p5@Nebl |
| 1.63e-72 | FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_7d7dea209a25d9f787051e4641653620 | p1@ENSMUST00000154140 |
| 1.63e-72 | FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_7d7dea209a25d9f787051e4641653620 | p5@Nebl |
| 1.63e-72 | FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_7d7dea209a25d9f787051e4641653620 | p@chr19:36193739..36193752, - |
| 1.82e-72 | FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_b385bf3167647796cfe17194e7be0125 | p@chr9:24529233..24529237, - |
| 1.82e-72 | FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_b385bf3167647796cfe17194e7be0125 | p@chr9:24529233..24529237, - |
| 2.03e-72 | FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_716814bb1b480ace13b70504d4671739 | p6@Usp20 |
| 2.03e-72 | FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_716814bb1b480ace13b70504d4671739 | p6@Usp20 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
