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{{UBERON
{{UBERON
|id=UBERON:0004681
|alt_id=
|name=vestibular system
|namespace=
|def="The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright." [Wikipedia:Vestibular_system]
|xref=BTO:0003381;;FMA:7193;;NIF_GrossAnatomy:nlx_anat_090819;;SCTID:361533001
|is_a=UBERON:0001032
|synonym="vestibular organ system" EXACT [FMA:7193];;"vestibular system" EXACT [NIF_GrossAnatomy:nlx_anat_090819]
|comment=note that FMA and NIF have no part information for this class. This is a GAT in FMA
|comment=note that FMA and NIF have no part information for this class. This is a GAT in FMA
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright." [Wikipedia:Vestibular_system]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004681
|is_a=UBERON:0001032
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=vestibular system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002105
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="vestibular organ system" EXACT [FMA:7193];;"vestibular system" EXACT [NIF_GrossAnatomy:nlx_anat_090819]
|union_of=
|xref=BTO:0003381;;FMA:7193;;NIF_GrossAnatomy:nlx_anat_090819;;SCTID:361533001
}}
}}

Latest revision as of 17:47, 12 September 2014

Name:vestibular system
Namespace:FANTOM
Definition:"The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright." [Wikipedia:Vestibular_system]
Xrefs:
links:

BTO:0003381
FMA:7193
NIF_GrossAnatomy:nlx_anat_090819

SCTID:361533001
Synonyms: "vestibular organ system" EXACT [FMA:7193]
"vestibular system" EXACT [NIF_GrossAnatomy:nlx_anat_090819]
Comments:note that FMA and NIF have no part information for this class. This is a GAT in FMA

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001032(sensory system)
part_of:UBERON:0002105(vestibulo-auditory system)



Children

part of:UBERON:0001839 (bony labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004681 (vestibular system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_e5a162bf539785528d2d44543a57c10cp@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_e5a162bf539785528d2d44543a57c10cp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_e5a162bf539785528d2d44543a57c10cp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_e5a162bf539785528d2d44543a57c10cp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_e5a162bf539785528d2d44543a57c10cp@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_e5a162bf539785528d2d44543a57c10cp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_e5a162bf539785528d2d44543a57c10cp2@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_e5a162bf539785528d2d44543a57c10cp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_e5a162bf539785528d2d44543a57c10cp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_e5a162bf539785528d2d44543a57c10cp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_e5a162bf539785528d2d44543a57c10cp@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_e5a162bf539785528d2d44543a57c10cp2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_e5a162bf539785528d2d44543a57c10cp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_e5a162bf539785528d2d44543a57c10cp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_e5a162bf539785528d2d44543a57c10cp2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_e5a162bf539785528d2d44543a57c10cp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_e5a162bf539785528d2d44543a57c10cp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_e5a162bf539785528d2d44543a57c10cp3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_e5a162bf539785528d2d44543a57c10cp3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_e5a162bf539785528d2d44543a57c10cp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_e5a162bf539785528d2d44543a57c10cp4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_e5a162bf539785528d2d44543a57c10cp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_e5a162bf539785528d2d44543a57c10cp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_e5a162bf539785528d2d44543a57c10cp1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_e5a162bf539785528d2d44543a57c10cp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_e5a162bf539785528d2d44543a57c10cp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_e5a162bf539785528d2d44543a57c10cp@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_e5a162bf539785528d2d44543a57c10cp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_e5a162bf539785528d2d44543a57c10cp@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_e5a162bf539785528d2d44543a57c10cp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_e5a162bf539785528d2d44543a57c10cp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_e5a162bf539785528d2d44543a57c10cp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_e5a162bf539785528d2d44543a57c10cp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_e5a162bf539785528d2d44543a57c10cp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_e5a162bf539785528d2d44543a57c10cp@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_e5a162bf539785528d2d44543a57c10cp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_e5a162bf539785528d2d44543a57c10cp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_e5a162bf539785528d2d44543a57c10cp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_e5a162bf539785528d2d44543a57c10cp13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_e5a162bf539785528d2d44543a57c10cp4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_e5a162bf539785528d2d44543a57c10cp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_e5a162bf539785528d2d44543a57c10cp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_e5a162bf539785528d2d44543a57c10cp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_e5a162bf539785528d2d44543a57c10cp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_e5a162bf539785528d2d44543a57c10cp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_e5a162bf539785528d2d44543a57c10cp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_e5a162bf539785528d2d44543a57c10cp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_e5a162bf539785528d2d44543a57c10cp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_e5a162bf539785528d2d44543a57c10cp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_e5a162bf539785528d2d44543a57c10cp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_e5a162bf539785528d2d44543a57c10cp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_e5a162bf539785528d2d44543a57c10cp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_e5a162bf539785528d2d44543a57c10cp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_e5a162bf539785528d2d44543a57c10cp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_e5a162bf539785528d2d44543a57c10cp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_e5a162bf539785528d2d44543a57c10cp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_e5a162bf539785528d2d44543a57c10cp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_e5a162bf539785528d2d44543a57c10cp2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_e5a162bf539785528d2d44543a57c10cp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_e5a162bf539785528d2d44543a57c10cp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_e5a162bf539785528d2d44543a57c10cp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_e5a162bf539785528d2d44543a57c10cp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_e5a162bf539785528d2d44543a57c10cp12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_e5a162bf539785528d2d44543a57c10cp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_e5a162bf539785528d2d44543a57c10cp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_e5a162bf539785528d2d44543a57c10cp@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_e5a162bf539785528d2d44543a57c10cp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_e5a162bf539785528d2d44543a57c10cp2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_e5a162bf539785528d2d44543a57c10cp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_e5a162bf539785528d2d44543a57c10cp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_e5a162bf539785528d2d44543a57c10cp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_e5a162bf539785528d2d44543a57c10cp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_e5a162bf539785528d2d44543a57c10cp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_e5a162bf539785528d2d44543a57c10cp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_e5a162bf539785528d2d44543a57c10cp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_e5a162bf539785528d2d44543a57c10cp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_e5a162bf539785528d2d44543a57c10cp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_e5a162bf539785528d2d44543a57c10cp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_e5a162bf539785528d2d44543a57c10cp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_e5a162bf539785528d2d44543a57c10cp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_e5a162bf539785528d2d44543a57c10cp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_e5a162bf539785528d2d44543a57c10cp3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_e5a162bf539785528d2d44543a57c10cp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_e5a162bf539785528d2d44543a57c10cp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_e5a162bf539785528d2d44543a57c10cp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_e5a162bf539785528d2d44543a57c10cp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_e5a162bf539785528d2d44543a57c10cp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_e5a162bf539785528d2d44543a57c10cp2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_e5a162bf539785528d2d44543a57c10cp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_e5a162bf539785528d2d44543a57c10cp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_e5a162bf539785528d2d44543a57c10cp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_e5a162bf539785528d2d44543a57c10cp@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_e5a162bf539785528d2d44543a57c10cp@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_e5a162bf539785528d2d44543a57c10cp9@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_e5a162bf539785528d2d44543a57c10cp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_e5a162bf539785528d2d44543a57c10cp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_e5a162bf539785528d2d44543a57c10cp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_e5a162bf539785528d2d44543a57c10cp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_e5a162bf539785528d2d44543a57c10cp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_e5a162bf539785528d2d44543a57c10cp@chr4:130461150..130461185, +

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