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{{UBERON
{{UBERON
|id=UBERON:0005295
|alt_id=
|name=sex cord
|namespace=
|def="Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." [http://www.answers.com/topic/sex-cord, Wikipedia:Sex_cords]
|xref=EHDAA2:0004051;;RETIRED_EHDAA2:0001523;;SCTID:343823004
|is_a=UBERON:0004120;;UBERON:0005154;;UBERON:0005291
|synonym="primitive sex cord" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." [http://www.answers.com/topic/sex-cord, Wikipedia:Sex_cords]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0005294
|develops_from=UBERON:0005294
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005295
|is_a=UBERON:0005154 ;;UBERON:0005291 ;;UBERON:0012275
|is_obsolete=
|located_in=
|located_in=
|name=sex cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="gonad cord" RELATED [];;"gonadal cord" RELATED [];;"primitive sex cord" RELATED []
|union_of=
|xref=EHDAA2:0004051;;ncithesaurus:Gonadal_Cord;;RETIRED_EHDAA2:0001523;;SCTID:343823004
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:sex cord
Namespace:FANTOM
Definition:"Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." Wikipedia:Sex_cords
Xrefs:
links:

EHDAA2:0004051
ncithesaurus:Gonadal_Cord
RETIRED_EHDAA2:0001523

SCTID:343823004
Synonyms: "gonad cord" RELATED []
"gonadal cord" RELATED []
"primitive sex cord" RELATED []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005154(epithelial cord),UBERON:0005291(embryonic tissue),UBERON:0012275(meso-epithelium)
develops_from:UBERON:0005294(genital ridge)
part_of:UBERON:0000922(embryo)



Children

is a:UBERON:0005297 (testis sex cord),UBERON:0010141 (primitive sex cord of indifferent gonad)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005295 (sex cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_dee50a5cc464bd87781fd742e960ea3ap26@BDNF
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_dee50a5cc464bd87781fd742e960ea3ap26@BDNF
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_e190fc138e6ef87f6877c3c96f40f4c1p9@RARRES1
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_e190fc138e6ef87f6877c3c96f40f4c1p43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_e190fc138e6ef87f6877c3c96f40f4c1p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_e190fc138e6ef87f6877c3c96f40f4c1p43@CDC42BPA
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_661f887516a047faeee8cf49ce8f2964p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_661f887516a047faeee8cf49ce8f2964p@chr7:18206831..18206833, +
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_661f887516a047faeee8cf49ce8f2964p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_661f887516a047faeee8cf49ce8f2964p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_661f887516a047faeee8cf49ce8f2964p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_661f887516a047faeee8cf49ce8f2964p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_661f887516a047faeee8cf49ce8f2964p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_661f887516a047faeee8cf49ce8f2964p7@C7orf63
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_661f887516a047faeee8cf49ce8f2964p7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_661f887516a047faeee8cf49ce8f2964p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_661f887516a047faeee8cf49ce8f2964p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_661f887516a047faeee8cf49ce8f2964p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_661f887516a047faeee8cf49ce8f2964p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_661f887516a047faeee8cf49ce8f2964p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_661f887516a047faeee8cf49ce8f2964p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_661f887516a047faeee8cf49ce8f2964p@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_661f887516a047faeee8cf49ce8f2964p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_661f887516a047faeee8cf49ce8f2964p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_661f887516a047faeee8cf49ce8f2964p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_661f887516a047faeee8cf49ce8f2964p@chr13:53030077..53030083, -
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_3f4186e09030b1282e48975b171bc4a5p@chr2:19551668..19551679, -
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_3f4186e09030b1282e48975b171bc4a5p@chr2:19551668..19551679, -
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_a98fbb01501dafee037014ef43c0be93p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_a98fbb01501dafee037014ef43c0be93p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_a98fbb01501dafee037014ef43c0be93p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_a98fbb01501dafee037014ef43c0be93p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_a98fbb01501dafee037014ef43c0be93p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_a98fbb01501dafee037014ef43c0be93p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_a98fbb01501dafee037014ef43c0be93p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_a98fbb01501dafee037014ef43c0be93p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_a98fbb01501dafee037014ef43c0be93p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_a98fbb01501dafee037014ef43c0be93p@chr1:197889533..197889548, +
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_eabc20a8c4fdcb2b1bd112b60af83fb9p38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_eabc20a8c4fdcb2b1bd112b60af83fb9p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_eabc20a8c4fdcb2b1bd112b60af83fb9p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_eabc20a8c4fdcb2b1bd112b60af83fb9p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_eabc20a8c4fdcb2b1bd112b60af83fb9p38@PTK2
6.41e-58FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_ef1996e82f5f0f51ce18b81e492d3636p4@Spink12
6.41e-58FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_ef1996e82f5f0f51ce18b81e492d3636p4@Spink12
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0p@chr11:114173606..114173612, +
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0p8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0p8@TCF21
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0p@chr2:177009137..177009140, +
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0p@chr11:114173606..114173612, +
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_38e2ddbdbb95d8e45bf12a9eb40cefd0p@chr2:177009137..177009140, +
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_d4251190e991aad4bf051df5ac9d3759p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_d4251190e991aad4bf051df5ac9d3759p32@CREB3L2
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_d4251190e991aad4bf051df5ac9d3759p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_d4251190e991aad4bf051df5ac9d3759p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_d4251190e991aad4bf051df5ac9d3759p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_d4251190e991aad4bf051df5ac9d3759p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_d4251190e991aad4bf051df5ac9d3759p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_d4251190e991aad4bf051df5ac9d3759p32@CREB3L2
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_d4251190e991aad4bf051df5ac9d3759p6@C2orf63
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_d4251190e991aad4bf051df5ac9d3759p31@ZNF331
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_d4251190e991aad4bf051df5ac9d3759p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_d4251190e991aad4bf051df5ac9d3759p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_d4251190e991aad4bf051df5ac9d3759p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_d4251190e991aad4bf051df5ac9d3759p11@USP25
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_223004120a02927b0e96ab348265ef83p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_223004120a02927b0e96ab348265ef83p11@EFCAB4A
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_223004120a02927b0e96ab348265ef83p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_223004120a02927b0e96ab348265ef83p10@ESR2
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_223004120a02927b0e96ab348265ef83p10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_223004120a02927b0e96ab348265ef83p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_223004120a02927b0e96ab348265ef83p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_223004120a02927b0e96ab348265ef83p11@EFCAB4A
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_223004120a02927b0e96ab348265ef83p@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_223004120a02927b0e96ab348265ef83p@chr4:103969123..103969127, -
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_ab2e4059470e01ac4f8fad9c37658f8bp3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_ab2e4059470e01ac4f8fad9c37658f8bp1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_ab2e4059470e01ac4f8fad9c37658f8bp3@CACNA1H
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_ab2e4059470e01ac4f8fad9c37658f8bp51@CDK6
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_ab2e4059470e01ac4f8fad9c37658f8bp51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_ab2e4059470e01ac4f8fad9c37658f8bp13@SOS2
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_ab2e4059470e01ac4f8fad9c37658f8bp13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_ab2e4059470e01ac4f8fad9c37658f8bp1@LOC645638
4.52e-44FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_edf8ff20c090f1cbc24aceeeea691b2ep@chr17:75581992..75582009, +
4.52e-44FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_edf8ff20c090f1cbc24aceeeea691b2ep@chr17:75581992..75582009, +
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_0903e266ac2844a324b26af184100e0ep@chr3:194214959..194214968, -
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_0903e266ac2844a324b26af184100e0ep@chr3:194214959..194214968, -
9.91e-41FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_5048498a0a723d99488b7c3d6d96eea8p@chr9:114135497..114135526, -
9.91e-41FFCP PHASE2:Hg19::chr11:77282391..77282402,+#_5048498a0a723d99488b7c3d6d96eea8p@chr11:77282391..77282402, +
9.91e-41FFCP PHASE2:Hg19::chr11:94822746..94822757,+#_5048498a0a723d99488b7c3d6d96eea8p8@ENDOD1
9.91e-41FFCP PHASE2:Hg19::chr13:49549473..49549480,+#_5048498a0a723d99488b7c3d6d96eea8p@chr13:49549473..49549480, +

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