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{{UBERON
{{UBERON
|id=UBERON:0005311
|alt_id=
|name=mammary placode
|namespace=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|xref=
|is_a=UBERON:0005085
|synonym=
|comment=TODO develops_from
|comment=TODO develops_from
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0008425
|develops_from=UBERON:0008425
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005311
|is_a=UBERON:0011814
|is_obsolete=
|located_in=
|located_in=
|name=mammary placode
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:mammary placode
Namespace:FANTOM
Definition:"The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
Comments:TODO develops_from

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011814(non-neurogenic ectodermal placode)
develops_from:UBERON:0008425(mammary ridge)



Children

develops from:UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005311 (mammary placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
1.87e-86FFCP PHASE2:Mm9::chr11:6535571..6535575,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535571..6535575, -
1.87e-86FFCP PHASE2:Mm9::chr9:68417059..68417064,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:68417059..68417064, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123612..88123619,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123612..88123619, +
1.87e-86FFCP PHASE1:Mm9::chr8:67022646..67022651,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:67022646..67022651, +
1.87e-86FFCP PHASE1:Mm9::chr4:19765092..19765098,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:19765092..19765098, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393361..103393372,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393361..103393372, -
1.87e-86FFCP PHASE2:Mm9::chr3:25229830..25229833,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:25229830..25229833, +
1.87e-86FFCP PHASE2:Mm9::chr5:88361470..88361479,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88361470..88361479, +
1.87e-86FFCP PHASE2:Mm9::chr10:46245998..46245999,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:46245998..46245999, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123602..88123609,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123602..88123609, -
1.87e-86FFCP PHASE1:Mm9::chr12:53708625..53708630,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:53708625..53708630, +
1.87e-86FFCP PHASE2:Mm9::chr5:88204809..88204827,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204809..88204827, +
1.87e-86FFCP PHASE1:Mm9::chr3:79647358..79647364,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:79647358..79647364, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393352..103393360,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393352..103393360, -
1.87e-86FFCP PHASE2:Mm9::chr5:88103101..88103120,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103101..88103120, -
1.87e-86FFCP PHASE1:Mm9::chr5:88204791..88204807,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204791..88204807, +
1.87e-86FFCP PHASE1:Mm9::chr11:6535548..6535558,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535548..6535558, -
1.87e-86FFCP PHASE2:Mm9::chr5:88217569..88217586,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217569..88217586, +
1.87e-86FFCP PHASE1:Mm9::chr5:88209981..88209984,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209981..88209984, +
1.87e-86FFCP PHASE1:Mm9::chr5:88100053..88100078,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100053..88100078, -
1.87e-86FFCP PHASE2:Mm9::chr6:24162312..24162345,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:24162312..24162345, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123526..88123536,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123526..88123536, +
1.87e-86FFCP PHASE1:Mm9::chr8:47396093..47396097,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:47396093..47396097, +
1.87e-86FFCP PHASE2:Mm9::chr17:30084999..30085000,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr17:30084999..30085000, +
1.87e-86FFCP PHASE2:Mm9::chr18:6733891..6733896,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733891..6733896, +
1.87e-86FFCP PHASE2:Mm9::chr15:85620623..85620633,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:85620623..85620633, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358910..88358931,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358910..88358931, +
1.87e-86FFCP PHASE2:Mm9::chr5:38893346..38893365,-#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc2a9
1.87e-86FFCP PHASE1:Mm9::chr5:88217757..88217772,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217757..88217772, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121763..88121767,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121763..88121767, -
1.87e-86FFCP PHASE2:Mm9::chr5:88126190..88126195,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88126190..88126195, -
1.87e-86FFCP PHASE2:Mm9::chr5:88098006..88098035,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88098006..88098035, +
1.87e-86FFCP PHASE2:Mm9::chr5:53394250..53394255,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:53394250..53394255, +
1.87e-86FFCP PHASE1:Mm9::chr5:88125200..88125204,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88125200..88125204, -
1.87e-86FFCP PHASE2:Mm9::chr15:98312614..98312624,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98312614..98312624, -
1.87e-86FFCP PHASE2:Mm9::chr1:40637157..40637179,+#_30b6d7c8bf53f346980477d3b2cc2429p3@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr5:88214300..88214314,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88214300..88214314, +
1.87e-86FFCP PHASE1:Mm9::chr9:67138095..67138099,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:67138095..67138099, -
1.87e-86FFCP PHASE1:Mm9::chr5:88206460..88206469,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88206460..88206469, +
1.87e-86FFCP PHASE1:Mm9::chr5:88096251..88096262,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88096251..88096262, +
1.87e-86FFCP PHASE2:Mm9::chr5:88358781..88358799,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358781..88358799, +
1.87e-86FFCP PHASE1:Mm9::chr5:88215650..88215658,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215650..88215658, -
1.87e-86FFCP PHASE1:Mm9::chr5:88108071..88108075,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88108071..88108075, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123868..88123890,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123868..88123890, +
1.87e-86FFCP PHASE2:Mm9::chr4:118634471..118634476,+#_30b6d7c8bf53f346980477d3b2cc2429p9@Lao1
1.87e-86FFCP PHASE1:Mm9::chr15:24986864..24986868,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:24986864..24986868, -
1.87e-86FFCP PHASE2:Mm9::chr18:79024191..79024193,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:79024191..79024193, +
1.87e-86FFCP PHASE2:Mm9::chr4:118641223..118641237,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118641223..118641237, -
1.87e-86FFCP PHASE1:Mm9::chr5:88358988..88358999,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358988..88358999, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123821..88123845,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123821..88123845, +
1.87e-86FFCP PHASE1:Mm9::chr13:23557637..23557642,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr13:23557637..23557642, -
1.87e-86FFCP PHASE2:Mm9::chr11:121057666..121057669,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:121057666..121057669, -
1.87e-86FFCP PHASE2:Mm9::chr5:88210806..88210830,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210806..88210830, +
1.87e-86FFCP PHASE2:Mm9::chr14:32247461..32247472,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr14:32247461..32247472, -
1.87e-86FFCP PHASE1:Mm9::chr9:47431371..47431374,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:47431371..47431374, +
1.87e-86FFCP PHASE1:Mm9::chr5:38893346..38893365,-#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc2a9
1.87e-86FFCP PHASE1:Mm9::chr4:118627452..118627463,-#_30b6d7c8bf53f346980477d3b2cc2429p2@ENSMUST00000155069, p2@uc008ulc.1
1.87e-86FFCP PHASE1:Mm9::chr15:98311094..98311111,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98311094..98311111, -
1.87e-86FFCP PHASE2:Mm9::chr9:60519767..60519772,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:60519767..60519772, +
1.87e-86FFCP PHASE2:Mm9::chr15:103394653..103394683,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103394653..103394683, -
1.87e-86FFCP PHASE2:Mm9::chr5:88109913..88109924,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109913..88109924, -
1.87e-86FFCP PHASE1:Mm9::chr4:118640438..118640443,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640438..118640443, +
1.87e-86FFCP PHASE2:Mm9::chr5:88217783..88217793,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217783..88217793, +
1.87e-86FFCP PHASE1:Mm9::chr5:88210863..88210879,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210863..88210879, -
1.87e-86FFCP PHASE1:Mm9::chr5:88103215..88103245,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103215..88103245, +
1.87e-86FFCP PHASE1:Mm9::chr1:40636991..40636997,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:40636991..40636997, -
1.87e-86FFCP PHASE2:Mm9::chr11:6537248..6537263,-#_30b6d7c8bf53f346980477d3b2cc2429p3@Wap
1.87e-86FFCP PHASE2:Mm9::chr5:88123698..88123707,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123698..88123707, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393712..103393723,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393712..103393723, -
1.87e-86FFCP PHASE2:Mm9::chr2:109975213..109975217,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:109975213..109975217, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358854..88358874,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358854..88358874, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123681..88123725,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123681..88123725, +
1.87e-86FFCP PHASE2:Mm9::chr5:88207077..88207084,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88207077..88207084, +
1.87e-86FFCP PHASE1:Mm9::chr15:81082279..81082303,-#_30b6d7c8bf53f346980477d3b2cc2429p1@uc007wwj.1
1.87e-86FFCP PHASE2:Mm9::chr15:103393425..103393435,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393425..103393435, -
1.87e-86FFCP PHASE2:Mm9::chr5:88106054..88106056,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88106054..88106056, +
1.87e-86FFCP PHASE1:Mm9::chr14:30342837..30342838,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr14:30342837..30342838, -
1.87e-86FFCP PHASE1:Mm9::chr11:6537234..6537253,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6537234..6537253, +
1.87e-86FFCP PHASE2:Mm9::chr4:116740698..116740723,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:116740698..116740723, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393258..103393296,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393258..103393296, +
1.87e-86FFCP PHASE2:Mm9::chr5:88359009..88359014,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88359009..88359014, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123539..88123551,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123539..88123551, +
1.87e-86FFCP PHASE1:Mm9::chr2:109975213..109975217,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:109975213..109975217, +
1.87e-86FFCP PHASE1:Mm9::chr15:74707088..74707089,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:74707088..74707089, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393258..103393296,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393258..103393296, +
1.87e-86FFCP PHASE2:Mm9::chr5:88100053..88100078,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100053..88100078, -
1.87e-86FFCP PHASE2:Mm9::chr10:100283528..100283529,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:100283528..100283529, +
1.87e-86FFCP PHASE2:Mm9::chr11:48162734..48162736,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:48162734..48162736, -
1.87e-86FFCP PHASE2:Mm9::chr5:88215663..88215674,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215663..88215674, +
1.87e-86FFCP PHASE1:Mm9::chr9:77686655..77686662,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686655..77686662, +
1.87e-86FFCP PHASE1:Mm9::chr5:88209047..88209050,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209047..88209050, -
1.87e-86FFCP PHASE1:Mm9::chr5:88098535..88098555,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88098535..88098555, +
1.87e-86FFCP PHASE1:Mm9::chr18:6733951..6733958,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733951..6733958, +
1.87e-86FFCP PHASE1:Mm9::chr11:6538794..6538800,-#_30b6d7c8bf53f346980477d3b2cc2429p4@Wap
1.87e-86FFCP PHASE2:Mm9::chr5:88121763..88121767,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121763..88121767, -
1.87e-86FFCP PHASE1:Mm9::chr2:28416848..28416860,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:28416848..28416860, -

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