UBERON:0005497: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005497
|name=non-neural ectoderm
|namespace=
|def=
|xref=EFO:0003643;;EHDAA:257;;EMAPA:16074;;RETIRED_EHDAA2:0001273;;VHOG:0001372;;XAO:0004091;;ZFA:...") |
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|xref=EFO:0003643;;EHDAA:257;;EMAPA:16074;;RETIRED_EHDAA2:0001273;;VHOG:0001372;;XAO:0004091;;ZFA:0001178 | |xref=EFO:0003643;;EHDAA:257;;EMAPA:16074;;RETIRED_EHDAA2:0001273;;TAO:0001178;;VHOG:0001372;;XAO:0004091;;ZFA:0001178 | ||
|is_a=UBERON:0000479;;UBERON: | |is_a=UBERON:0000479;;UBERON:0004121 | ||
|synonym="non neural ectoderm" EXACT [ZFA:0001178];;"ventral ectoderm" EXACT [ZFA:0001178] | |synonym="epidermal ectoderm" NARROW [UBERONREF:0000002];;"epithelial ectoderm" NARROW [UBERONREF:0000002];;"non neural ectoderm" EXACT [ZFA:0001178];;"surface ectoderm" RELATED [UBERONREF:0000002];;"ventral ectoderm" EXACT [ZFA:0001178] | ||
|comment=Development: After gastrulation, neural crest cells are specified at the border of the neural plate and the non-neural ectoderm. Editor note: todo - epidermis? todo - track down EHDAA2 class in new release // Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998) | |comment=Development notes: After gastrulation, neural crest cells are specified at the border of the neural plate and the non-neural ectoderm. Editor note: todo - epidermis? todo - track down EHDAA2 class in new release // Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998) | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0000924 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002346 | ||
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Latest revision as of 13:40, 27 June 2012
| Name: | non-neural ectoderm | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"epidermal ectoderm" NARROW [UBERONREF:0000002] "epithelial ectoderm" NARROW [UBERONREF:0000002] "non neural ectoderm" EXACT [ZFA:0001178] "surface ectoderm" RELATED [UBERONREF:0000002] "ventral ectoderm" EXACT [ZFA:0001178] | ||
| Comments: | Development notes: After gastrulation, neural crest cells are specified at the border of the neural plate and the non-neural ectoderm. Editor note: todo - epidermis? todo - track down EHDAA2 class in new release // Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998) | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0000924(ectoderm) |
Children
| develops from: | UBERON:0009122 (adenohypophyseal placode) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005497 (non-neural ectoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
