Personal tools

UBERON:0005882: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0005882 |name=alar plate |namespace= |def="the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory n...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005882
|alt_id=
|name=alar plate
|namespace=
|def="the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord." [MP:0009692, Wikipedia:Alar_plate]
|xref=
|is_a=UBERON:0005423
|synonym="alar lamina" RELATED [Wikipedia:Alar_lamina];;"spinal cord alar column" EXACT [MP:0009692];;"spinal cord alar lamina" EXACT [MP:0009692]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses." [MP:0009692, Wikipedia:Alar_plate]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005882
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0001049
|name=neural tube alar plate
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004061
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="alar lamina" RELATED [Wikipedia:Alar_lamina];;"lamina alaris" RELATED [Wikipedia:Alar_lamina];;"lamina dorsolateralis" RELATED [Wikipedia:Alar_lamina];;"lamina dorsolateralis; lamina alaris" RELATED LATIN [Wikipedia:Alar_plate]
|union_of=
|xref=http://upload.wikimedia.org/wikipedia/commons/2/29/Gray646.png
}}
}}

Latest revision as of 17:55, 12 September 2014

Name:neural tube alar plate
Namespace:FANTOM
Definition:"the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses." [MP:0009692, Wikipedia:Alar_plate]
Xrefs:
links:
[ Gray646.png Gray646.png]
Synonyms: "alar lamina" RELATED [Wikipedia:Alar_lamina]
"lamina alaris" RELATED [Wikipedia:Alar_lamina]
"lamina dorsolateralis" RELATED [Wikipedia:Alar_lamina]
"lamina dorsolateralis; lamina alaris" RELATED LATIN [Wikipedia:Alar_plate]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0004061(neural tube mantle layer)



Children

develops from:UBERON:0002314 (midbrain tectum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005882 (neural tube alar plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.47e-44FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_f67d635f5db3c21423e5967964bf235ap@chr1:158200818..158200829, -
7.47e-44FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_f67d635f5db3c21423e5967964bf235ap@chr1:158200818..158200829, -
2.87e-30FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_3186927f45dd50e1727453b8fdee8dc1p@chr15:22719411..22719436, +
2.87e-30FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_3186927f45dd50e1727453b8fdee8dc1p19@Rgs8
2.87e-30FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_3186927f45dd50e1727453b8fdee8dc1p@chr15:22719411..22719436, +
2.87e-30FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_3186927f45dd50e1727453b8fdee8dc1p19@Rgs8
3.06e-23FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_05fd140d4ea80ef2e3abda0e51425388p@chr2:127098489..127098493, -
3.06e-23FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_05fd140d4ea80ef2e3abda0e51425388p@chr2:127098489..127098493, -
5.07e-23FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr2:158208771..158208772, +
5.07e-23FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr2:158208771..158208772, +
5.07e-23FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr16:96721083..96721092, +
5.07e-23FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr16:96721083..96721092, +
8.39e-23FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_ad5b694dddb2697c6cb753cdb48bb331p1@ENSMUST00000157206
8.39e-23FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_ad5b694dddb2697c6cb753cdb48bb331p1@ENSMUST00000157206
1.39e-22FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_4da087f05866eb6401eb25d85b06361ep7@Adipor2
1.39e-22FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_4da087f05866eb6401eb25d85b06361ep7@Adipor2
5.15e-19FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_5c68ddc8bc3bab1dbb26bb7c7dbd4176p@chr14:52528327..52528336, -
5.15e-19FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_5c68ddc8bc3bab1dbb26bb7c7dbd4176p@chr14:52528327..52528336, -
7.74e-19FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_0cb0591ddffc5e701c1a1fd02a54d1c5p@chr19:32177340..32177351, -
7.74e-19FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_0cb0591ddffc5e701c1a1fd02a54d1c5p@chr19:32177340..32177351, -
1.16e-18FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_3cd590d293544011751c7b1cb5809670p@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_3cd590d293544011751c7b1cb5809670p@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_3cd590d293544011751c7b1cb5809670p@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_3cd590d293544011751c7b1cb5809670p@chr4:83035887..83035924, -
1.74e-18FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_9a994076ebe7c8a3941ab7f0a3df38b5p@chr8:123151369..123151375, +
1.74e-18FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_9a994076ebe7c8a3941ab7f0a3df38b5p@chr8:123151369..123151375, +
2.59e-18FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_386e7db4a73736247585c6b8373a9dfdp@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_386e7db4a73736247585c6b8373a9dfdp3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_386e7db4a73736247585c6b8373a9dfdp3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_386e7db4a73736247585c6b8373a9dfdp@chr8:108091532..108091548, -
2.59e-18FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_386e7db4a73736247585c6b8373a9dfdp@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_386e7db4a73736247585c6b8373a9dfdp@chr8:108091532..108091548, -
6.79e-16FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_2486390bc7ce34429732646f149a1846p@chr1:101686777..101686780, +
6.79e-16FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_2486390bc7ce34429732646f149a1846p@chr1:101686777..101686780, +
9.51e-16FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_ebd062faa79201fa15f934b1c1ababb2p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_ebd062faa79201fa15f934b1c1ababb2p6@Ptprr
9.51e-16FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_ebd062faa79201fa15f934b1c1ababb2p9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_ebd062faa79201fa15f934b1c1ababb2p6@Ptprr
9.51e-16FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_ebd062faa79201fa15f934b1c1ababb2p3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_ebd062faa79201fa15f934b1c1ababb2p9@Clasp2
9.51e-16FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_ebd062faa79201fa15f934b1c1ababb2p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_ebd062faa79201fa15f934b1c1ababb2p3@Ninj2
1.33e-15FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_9f702ba925ddde8d5bfc2e8bc8f0a417p19@Gas7
1.33e-15FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_9f702ba925ddde8d5bfc2e8bc8f0a417p19@Gas7
1.86e-15FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr14:33139881..33139891, +
1.86e-15FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr19:47099743..47099759, +
1.86e-15FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp15@Ccdc92
1.86e-15FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr11:55886412..55886420, +
1.86e-15FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr17:8492594..8492603, -
1.86e-15FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp15@Ccdc92
1.86e-15FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr14:33139881..33139891, +
1.86e-15FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr17:8492594..8492603, -
3.62e-14FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_23035eaa9c3de461afea0e2f80d4add5p63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_23035eaa9c3de461afea0e2f80d4add5p63@Tcf7l2
3.62e-14FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_23035eaa9c3de461afea0e2f80d4add5p@chr16:96720848..96720858, +
3.62e-14FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_23035eaa9c3de461afea0e2f80d4add5p@chr16:96720848..96720858, +
4.85e-14FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_ef50817acc3c71b02705021899993ff9p@chr14:93478934..93478944, -
4.85e-14FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_ef50817acc3c71b02705021899993ff9p@chr14:93478934..93478944, -
6.5e-14FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_ca3f2ed6fc3043fd75f9de2b3a37396cp2@Ghrh
6.5e-14FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_ca3f2ed6fc3043fd75f9de2b3a37396cp2@Ghrh
8.69e-14FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_5bb4290c95efab3d6c117825f55c9188p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_5bb4290c95efab3d6c117825f55c9188p8@St18
8.69e-14FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_5bb4290c95efab3d6c117825f55c9188p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_5bb4290c95efab3d6c117825f55c9188p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_5bb4290c95efab3d6c117825f55c9188p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_5bb4290c95efab3d6c117825f55c9188p8@St18
8.69e-14FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_5bb4290c95efab3d6c117825f55c9188p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_5bb4290c95efab3d6c117825f55c9188p@chr2:31133553..31133564, +
1.16e-13FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_24f5cde9bd4a1fd0f5285919f035a7b8p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr2:163149068..163149077, +
1.16e-13FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_24f5cde9bd4a1fd0f5285919f035a7b8p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr2:163149068..163149077, +
1.55e-13FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_7314dece29173a04f757c285349eaee0p6@Skp1a
1.55e-13FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_7314dece29173a04f757c285349eaee0p5@Rnf34
1.55e-13FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_7314dece29173a04f757c285349eaee0p6@Skp1a
1.55e-13FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_7314dece29173a04f757c285349eaee0p5@Rnf34
2.06e-13FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_3ae46de9568193625b971ada0cc79aa9p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_3ae46de9568193625b971ada0cc79aa9p6@Ap2a1
2.06e-13FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_3ae46de9568193625b971ada0cc79aa9p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_3ae46de9568193625b971ada0cc79aa9p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_3ae46de9568193625b971ada0cc79aa9p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_3ae46de9568193625b971ada0cc79aa9p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_3ae46de9568193625b971ada0cc79aa9p6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_3ae46de9568193625b971ada0cc79aa9p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_3ae46de9568193625b971ada0cc79aa9p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_3ae46de9568193625b971ada0cc79aa9p@chr6:126588640..126588687, -
1.2e-12FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_fd6ddc727bfbc957428ee93e2d09742fp3@Rgs17
1.2e-12FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_fd6ddc727bfbc957428ee93e2d09742fp3@Rgs17
2.01e-12FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_29fb0a70c5268618757374530faec956p14@Fbxo7
2.01e-12FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_29fb0a70c5268618757374530faec956p1@ENSMUST00000124586
2.01e-12FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_29fb0a70c5268618757374530faec956p14@Fbxo7
2.01e-12FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_29fb0a70c5268618757374530faec956p1@ENSMUST00000124586

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005882&oldid=3277813"