FFCP PHASE1:Hg19::chr10:91007364..91007388,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:91007364..91007388,- to FFCP PHASE1:Hg19::chr10:91007364..91007388,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3988 | |EntrezGene=3988 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6617 | |HGNC=6617 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_CU680270,HQ447241_5end | |||
|cluster_id=chr10:91007364..91007388,- | |||
|coexpression_cluster_id=C54 | |||
|description=CAGE_peak_12_at_LIPA_5end | |||
|id=chr10:91007364..91007388,- | |||
|ontology_enrichment_celltype=CL:0002194!1.68e-07!63;CL:0000576!1.68e-07!63;CL:0000040!1.68e-07!63;CL:0000559!1.68e-07!63;CL:0002009!5.20e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000235;7.40e-70;6!CL:0000840;1.08e-18;5!CL:0000990;1.15e-12;8!CL:0000451;1.83e-10;10!CL:0000473;3.51e-09;39!CL:0000234;3.51e-09;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,4.61e-70,6;CL:0000840,1.08e-18,5;CL:0001029,1.08e-18,5;CL:0002194,1.96e-18,59;CL:0000576,1.96e-18,59;CL:0000040,1.96e-18,59;CL:0000559,1.96e-18,59;CL:0002009,8.44e-18,61;CL:0000839,2.22e-16,66;CL:0000557,4.03e-16,67;CL:0000766,6.24e-15,72;CL:0000990,1.15e-12,8;CL:0000451,1.83e-10,10;CL:0000763,1.42e-09,108;CL:0000049,1.42e-09,108;CL:0002087,6.44e-09,115;CL:0000473,1.63e-08,48;CL:0000234,1.63e-08,48;CL:0002031,1.71e-08,120;CL:0000738,2.40e-07,136 | |||
|ontology_enrichment_development_v019=UBERON:0005425;7.24e-13;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.55e-16;3!DOID:127;1.55e-16;3!DOID:0060072;1.20e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.88e-16,3;DOID:127,1.88e-16,3;DOID:0060072,1.39e-12,4 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;7.24e-13;1!UBERON:0002171;7.24e-13;1!UBERON:0001785;7.24e-13;1!UBERON:0002464;7.24e-13;1!UBERON:0004904;7.24e-13;1!UBERON:0001021;7.24e-13;1!UBERON:0006518;7.24e-13;1!UBERON:0008949;7.24e-13;1!UBERON:0000101;7.24e-13;1!UBERON:0002167;7.24e-13;1!UBERON:0003714;4.55e-07;2!UBERON:0005162;4.55e-07;2!UBERON:0000122;4.55e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,2.92e-14,90;UBERON:0002371,4.32e-14,76;UBERON:0001474,5.57e-13,82;UBERON:0000941,6.82e-13,1;UBERON:0001785,6.82e-13,1;UBERON:0002464,6.82e-13,1;UBERON:0004904,6.82e-13,1;UBERON:0001021,6.82e-13,1;UBERON:0003902,6.82e-13,1;UBERON:0005425,6.82e-13,1;UBERON:0002171,7.68e-13,1;UBERON:0006518,7.68e-13,1;UBERON:0008949,7.68e-13,1;UBERON:0000101,7.68e-13,1;UBERON:0002167,7.68e-13,1;UBERON:0001434,1.05e-12,100;UBERON:0002405,2.60e-11,93;UBERON:0002390,1.13e-10,98;UBERON:0003061,1.13e-10,98;UBERON:0002193,1.42e-09,108;UBERON:0003714,4.42e-07,2;UBERON:0005162,4.42e-07,2;UBERON:0000122,4.42e-07,2;UBERON:0002204,4.90e-07,167 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,2.00146596706261,0.446961094427288,0,0,0,0.783556884599516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0.393364276848904,0,0,0.919421224478927,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0.671746422719773,0.971680998056939,1.03030227053675,0.436194716338694,0.377875943688809,0,0.232429036905685,0,0.309706370895104,0,0.512321413058201,0,0.344745680736619,0,0,0.376484679085209,0.272906150057846,0.224723484445085,0,0,0.639337125799041,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0.422510572623884,0,0.419317291016752,0,0.150176892841506,0,0,0.19891667719909,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443067789167242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,6.49094787309367,8.35822739036483,14.2265017755186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0,0.573673241497627,0.354668382198357,0,0,0,0,0,0.653847612453835,0,0.576175924479999,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0.37223371266318,0.168776332241266,0,0,0,0,0.355009592516614,0,0,0,0,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0,0,0.464367928031979,0.721879481669586,0.118306800039844,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.201057944823262,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0.190254152234598,0,0,1.72351904261178,3.27605971194933,1.78357394746474,1.87467667973554,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0.285826432630578,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0.266422179016099,0.285955987316295,0,0,0,0.355391948742546,0,0,0,0.199945982364114,3.64871341923571,4.01805673145701,10.5416969741516,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0.112085143993527,0,0,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0.207970861530807,0.535286966391485,0.157702415033935,0,0,0,0,0,0,0.0868836144680828,0,0,0.206768026122887,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0.256278298511402,0,0.321707842287215,0,0,0,0,0,0.232420756919918,0,0.802025881213139,0.0920809889358963,0.459257792658427,0,0.262248829918848,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0,0.256450125116389,0,0,0,0.0915694648183434,0,0.574265537996172,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0.145016693914229,0.170453254832202,0,0,0,0,0.10115778085555,0,0,0,0,0.532306030317022,0,0,0.429374660225974,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0.823611089208164,0.235624804691373,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0.281695602532241,0,0.0982490410131212,0,0.354761064070598,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0.245040215981032,0,0,0,0,0.399158742865633,0,0.211673582723883,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0.0897576444097721,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.134802265961354,0,0.468528891450678,0,0,0.971121518136371,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.347119476670262,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0.157611414598396,0,0,0,0,0,0,0,1.08599920350743,3.45688596480507,0,0,0,0.170388021785422,0,0,0,0.129282956361551,0.52893040697076,0,0,0.106787412567695,0,1.24271716604159,0.496166021811951,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0.18628920882415,0,0.124980407962107,0,0,0.470531639396343,0.468334905806882,0,0.149254802886874,0,1.10961172300523,0,0,0,0.228840068396924,0.151230923763239,0,0,0,0,0,0,0.53168342911599,0,0.300515217994437,0,0,0.181848659202559,0.107410557042488,0,0.796191777397232,0.800055529326307,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0.219284049578707,0.176689145945881,0.38582807654183,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0.0642292250964595,0,0,0,0,0.0691572524642179,0,1.42769420259154,0,0.11796972334774,0.366857197043358,0.115525666150338,0,0,0.198916222116275,0.0752103283492573,0,0,0,0.163771917510097,0,0.0675375846183947,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0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| 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| ||
|short_description=p12@LIPA | |||
}} | }} |
Latest revision as of 21:46, 19 September 2015
Short description: | p12@LIPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_LIPA_5end |
Coexpression cluster: | C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature |
Association with transcript: | 16bp_to_CU680270, HQ447241_5end |
EntrezGene: | LIPA |
HGNC: | 6617 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 4.61e-70 | 6 |
immature conventional dendritic cell | 1.08e-18 | 5 |
common dendritic progenitor | 1.08e-18 | 5 |
monopoietic cell | 1.96e-18 | 59 |
monocyte | 1.96e-18 | 59 |
monoblast | 1.96e-18 | 59 |
promonocyte | 1.96e-18 | 59 |
macrophage dendritic cell progenitor | 8.44e-18 | 61 |
myeloid lineage restricted progenitor cell | 2.22e-16 | 66 |
granulocyte monocyte progenitor cell | 4.03e-16 | 67 |
myeloid leukocyte | 6.24e-15 | 72 |
conventional dendritic cell | 1.15e-12 | 8 |
dendritic cell | 1.83e-10 | 10 |
myeloid cell | 1.42e-09 | 108 |
common myeloid progenitor | 1.42e-09 | 108 |
nongranular leukocyte | 6.44e-09 | 115 |
defensive cell | 1.63e-08 | 48 |
phagocyte | 1.63e-08 | 48 |
hematopoietic lineage restricted progenitor cell | 1.71e-08 | 120 |
leukocyte | 2.40e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 2.92e-14 | 90 |
bone marrow | 4.32e-14 | 76 |
bone element | 5.57e-13 | 82 |
cranial nerve II | 6.82e-13 | 1 |
cranial nerve | 6.82e-13 | 1 |
nerve trunk | 6.82e-13 | 1 |
nerve connecting eye with brain | 6.82e-13 | 1 |
nerve | 6.82e-13 | 1 |
retinal neural layer | 6.82e-13 | 1 |
presumptive neural retina | 6.82e-13 | 1 |
lower lobe of right lung | 7.68e-13 | 1 |
right lung lobe | 7.68e-13 | 1 |
lower lobe of lung | 7.68e-13 | 1 |
lobe of lung | 7.68e-13 | 1 |
right lung | 7.68e-13 | 1 |
skeletal system | 1.05e-12 | 100 |
immune system | 2.60e-11 | 93 |
hematopoietic system | 1.13e-10 | 98 |
blood island | 1.13e-10 | 98 |
hemolymphoid system | 1.42e-09 | 108 |
neural tissue | 4.42e-07 | 2 |
multi cell component structure | 4.42e-07 | 2 |
neuron projection bundle | 4.42e-07 | 2 |
musculoskeletal system | 4.90e-07 | 167 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.88e-16 | 3 |
leiomyoma | 1.88e-16 | 3 |
benign neoplasm | 1.39e-12 | 4 |