FF:10552-107I3: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 2: | Line 2: | ||
|DRA_sample_Accession=CAGE@SAMD00005160 | |DRA_sample_Accession=CAGE@SAMD00005160 | ||
|HumanCAGEScanFiles=NCig10063;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.pairs.bed.gz!NCig10127;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.pairs.bed.gz | |HumanCAGEScanFiles=NCig10063;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.pairs.bed.gz!NCig10127;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX007845;DRR008717;DRZ000142;DRZ001527 | |accession_numbers=CAGE;DRX007845;DRR008717;DRZ000142;DRZ001527;DRZ011492;DRZ012877 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
Line 54: | Line 54: | ||
|microRNAs= | |microRNAs= | ||
|microRNAs_nn= | |microRNAs_nn= | ||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/ | |microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10552 | ||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/ | |microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10552 | ||
|name=cervical cancer cell line:D98-AH2 | |name=cervical cancer cell line:D98-AH2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 63: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |refex=http://refex.dbcls.jp/genelist.php?lang | ||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0581205176786563,0.122810500528481,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,-0.153323010348428,0,0,0,0.0224537236175799,0,-0.0530504490328978,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0910325440779906,0,0,0,0,0,0,0,0,-0.00176129749525449,0,0,0,0,0,0,0.0449074472351597,-0.0520849140074454,0,0,0.121094920551945,0,0,0,0,0,0,0,0,0.0856034027394797,0,0,0,0,0,0,0,0,0,0.148381521410048,0,0,0,0,-0.00810239190957718,-0.212202957538817,0.0428017013697398,0,0,0.125614907685558,-0.168395701326129,0.0428017013697398,0,0.0224537236175799,0.157079990756217,-0.0531279040025467,-0.054618226919075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389918999446488,0.157079990756217,0,0,-0.144948413108805,-0.369469973175683,0.0449074472351597,0,0,0,0,0 | |repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0581205176786563,0.122810500528481,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,-0.153323010348428,0,0,0,0.0224537236175799,0,-0.0530504490328978,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0910325440779906,0,0,0,0,0,0,0,0,-0.00176129749525449,0,0,0,0,0,0,0.0449074472351597,-0.0520849140074454,0,0,0.121094920551945,0,0,0,0,0,0,0,0,0.0856034027394797,0,0,0,0,0,0,0,0,0,0.148381521410048,0,0,0,0,-0.00810239190957718,-0.212202957538817,0.0428017013697398,0,0,0.125614907685558,-0.168395701326129,0.0428017013697398,0,0.0224537236175799,0.157079990756217,-0.0531279040025467,-0.054618226919075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389918999446488,0.157079990756217,0,0,-0.144948413108805,-0.369469973175683,0.0449074472351597,0,0,0,0,0 | ||
|repeat_enrich_byname=0,0.0856034027394797,0,0.0856034027394797,-0.0531279040025467,0,0.157079990756217,0.296763042820096,0.0449074472351597,0,0.0856034027394797,0,0,0,0,0,-0.00103268751077645,0,-0.0358579703174116,0.176503254165266,0,0,-0.0680519679960297,0,0.516893203272928,0,0,0,0,0,0.157079990756217,0,-0.128119866952565,0,-0.0055051043541552,0.0449074472351597,0,0,0,-0.0186252810838506,0.0145461657903308,0,0.0173083811599347,-0.0234368138422085,0,0,0,0,0.0884550812917282,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.599408603467567,-0.04680465889238,0,0,0,-0.497711616309757,-0.0457937266549909,0,0,0.049265909870139,-0.158895894943079,0,0,-0.391044581551635,0,-0.172406779689391,0.146351949848507,0,0,0,0,0,0,0,0.0449074472351597,0,0.0449074472351597,0.218438547765042,0,0,-0.0574934668214365,0.292022820168405,-0.0280208649195907,0.0449074472351597,0.157079990756217,-0.0439415075185498,-0.151189921544483,0,0,-0.21620616520035,0.0724595467591648,-0.0341639312817712,-0.145236219352669,0,-0.302389727009913,-0.192192476989396,-0.331126913484837,-0.0614435294650576,-0.147401849371139,-0.189981719549847,0,-0.139444153126464,-0.403139744495123,-0.0227907590844154,-0.318363596922434,-0.149969438706961,-0.0293408076495008,-0.11127820280392,0,0,0,-0.181672949908215,0,0,0.456512872514073,-0.124124924254948,0.0559982966314055,-0.352406689125734,0.339962163575133,0.0530568315336046,-0.0395325284566706,0.0594567503763329,-0.00739958642852277,0.0820751776363254,0,0,-0.0605986608783202,-0.0420118584407915,-0.0658686246162722,-0.0448792952508427,0,-0.0816922601584275,-0.0683442610773682,0,-0.347930153278573,-0.184301891655332,0,-0.180617608787366,-0.258758834182674,0,0,-0.0248221651375689,0,0.246146187774788,-0.0558432405357954,0.0439786942990478,0.0132906262192432,0,-0.0238622236750303,-0.08784965288056,0.140581858749486,0,0.247004321189988,0.13992076163322,0.0850587322575966,-0.181314838134807,0,0.0304784881898992,-0.450515681173325,0.0664487644531904,-0.336791402652258,0.213744793364745,-0.111460516928357,-0.191487448477398,0.192021561118301,-0.286680858812362,-0.0387042938539338,-0.0881268324752877,-0.0218997492321154,-0.88354475051838,0.151330299347462,-0.0318991510809555,-0.382387303403295,0,-0.123985445365555,0,0.448491557725897,0,-0.0422087399259597,-0.0381747454953754,-0.0370041729281331,0.151489654588375,0,-0.286538670535861,0.370214393705456,0,-0.127178974377949,0,0,-0.10545963609948,0.133132464456403,-0.0799774303644879,-0.00289364659090965,0,-0.194436421091056,0,0,-0.234971596482504,0.0367155824121813,0.0856034027394797,0.0174581586789039,-0.0511519066572007,-0.00857230389669394,-0.115971073434934,0,0,0.133258623301407,0,0,0.277463415989496,-0.0386533459181786,-0.619783323958633,-0.0644843548637385,-0.0353834651911289,-0.108622809454255,0,0,0.16456375727885,0.0449074472351597,-0.76570740527751,0,0,0.152942146016441,0,0,0,0,0,0,0,0,0,0,0,0,0.00018440226837324,0.147425675761417,0,0.0112752650593717,0,0,0,0,0.157079990756217,-0.0782972046976899,0,0,0.00972882613367232,0,-0.0374140129369405,0,0,0,0,0.00271514521156768,-0.0804260615662426,0.0856034027394797,-0.00905220596915053,0,0,0,0,-0.0412335425540516,0,0,0,0.0224537236175799,0.0993495337025533,-0.0971958902285415,0,0,0,-0.232046954366631,0,0,0,0,-0.053741879959476,0,0,-0.289838650142354,0,-0.171701545932373,0.301551005072048,0,0.121603750788584,-0.571027444792864,0.35613321600043,0,0.122810500528481,0.0108444883866824,0,0,0.208546712725529,0,0.122810500528481,0.0140450778534404,0,0,0,0,0.122810500528481,0,-0.0254725257767384,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0.0337946568887528,0.126214491106532,0.0449074472351597,0,0,0,0,0,0,-0.0241060230789031,-0.0666728324362572,0,0,0,0,0,0.0856034027394797,0,0,0.136058783831626,0,0,0,0,0,-0.0520849140074454,0,0,0,0,-0.564807121153884,0,0,-0.232454684958354,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0337609047207695,-0.445156091410246,0,0,0,0,0,0.122810500528481,0,-0.27483329820609,0,0,0,0,-0.0282809709694975,0,0,0,-0.104796384789156,0,0.0581205176786563,0,0,0,0,0,0,0.0224537236175799,0,0,0,0,0,0,0,0,0,0,0,0.0944209933115085,0,0,-0.139804279346511,0.00401112368825836,-0.231151962961127,-0.00589499941695548,0,0,-0.0510799371251695,0,0,0,0,0,0,0.0471995713495816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157079990756217,0,0,0,0,0,0,0.0079436575646515,0,0,0,0,0,0,0,-0.0530504490328978,0,0,0.165567985492043,0,0,0,0,0,0,-0.00349950915837649,-0.0792182606976951,-0.0901326348718791,0,0,0,-0.054385572482455,0,0,0,0.0449074472351597,0.151661160346141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.109219273882521,0,0,0,0,0,0,0,0,0,0,0,0,0.157079990756217,0,0.0449074472351597,0.0449074472351597,0,0,0.157079990756217,0,0,0,0.0828633536536719,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0902757291285625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5956437372986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,-0.108665824130299,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.208412519271687,0,0,0,0,-0.00272966342575912,0,0,0,0,0,0,0,0,0,0,0.342091523244026,0,0,0,0,0,0,0,0.0224537236175799,0,0,-0.130800107760024,0,0,-0.145067490033338,0,0,0,0,0,0,0,0,0,0,0,0,0.0614903213783548,0,0,0,0,0,0,0,0,0,0,-0.00352259499050898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.150724755562264,-0.369469973175683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0224537236175799,0.0428017013697398,0,0,0,0,0,0,0,0,0,0,0,0.0944209933115085,0,-0.0341312203285728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0072431987550959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645132549235442,0,0,0,0,0.0449074472351597,0,0,0,0.27219162017657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0934031043830947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779837998892975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0224537236175799,0,0,0,0,0,0,0,0,0,0.0224537236175799,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0.0224537236175799,0,0.0449074472351597,0,0,-0.0211406041982221,0,0,0.0224537236175799,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122810500528481,0,0,0,0,0,0,-0.00128605989998204,0,0,0,0,0,0,0,0,0,0,0,0.0224537236175799,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191566442309445,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121094920551945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188841986623017,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0274842589040066,0.0224537236175799,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.133038561099505,0,0,0.00261997875804377,0,-0.163692210442696,0.064529685408385,0,0,0,0,0,-0.0695147852012049,0,0,0,0,0,0,0,0,0,0,0.0827342528039496,0.0449074472351597,0,0.101210691298583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,-0.157261594794485,0,-0.0338756006286351,-0.03397785750627,0,0,-0.116855638024653,0.00781387877266287,0,-0.0477396614475454,0,0,0.097198725086271,0.219386023779372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0090641619986915,0,0.0856034027394797,0,-0.0119514989274394,0.441458891157299,0,-0.0820732115303281,0,0.0449074472351597,0.36012293778231,0,0,0,0.324669051058423 | |repeat_enrich_byname=0,0.0856034027394797,0,0.0856034027394797,-0.0531279040025467,0,0.157079990756217,0.296763042820096,0.0449074472351597,0,0.0856034027394797,0,0,0,0,0,-0.00103268751077645,0,-0.0358579703174116,0.176503254165266,0,0,-0.0680519679960297,0,0.516893203272928,0,0,0,0,0,0.157079990756217,0,-0.128119866952565,0,-0.0055051043541552,0.0449074472351597,0,0,0,-0.0186252810838506,0.0145461657903308,0,0.0173083811599347,-0.0234368138422085,0,0,0,0,0.0884550812917282,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.599408603467567,-0.04680465889238,0,0,0,-0.497711616309757,-0.0457937266549909,0,0,0.049265909870139,-0.158895894943079,0,0,-0.391044581551635,0,-0.172406779689391,0.146351949848507,0,0,0,0,0,0,0,0.0449074472351597,0,0.0449074472351597,0.218438547765042,0,0,-0.0574934668214365,0.292022820168405,-0.0280208649195907,0.0449074472351597,0.157079990756217,-0.0439415075185498,-0.151189921544483,0,0,-0.21620616520035,0.0724595467591648,-0.0341639312817712,-0.145236219352669,0,-0.302389727009913,-0.192192476989396,-0.331126913484837,-0.0614435294650576,-0.147401849371139,-0.189981719549847,0,-0.139444153126464,-0.403139744495123,-0.0227907590844154,-0.318363596922434,-0.149969438706961,-0.0293408076495008,-0.11127820280392,0,0,0,-0.181672949908215,0,0,0.456512872514073,-0.124124924254948,0.0559982966314055,-0.352406689125734,0.339962163575133,0.0530568315336046,-0.0395325284566706,0.0594567503763329,-0.00739958642852277,0.0820751776363254,0,0,-0.0605986608783202,-0.0420118584407915,-0.0658686246162722,-0.0448792952508427,0,-0.0816922601584275,-0.0683442610773682,0,-0.347930153278573,-0.184301891655332,0,-0.180617608787366,-0.258758834182674,0,0,-0.0248221651375689,0,0.246146187774788,-0.0558432405357954,0.0439786942990478,0.0132906262192432,0,-0.0238622236750303,-0.08784965288056,0.140581858749486,0,0.247004321189988,0.13992076163322,0.0850587322575966,-0.181314838134807,0,0.0304784881898992,-0.450515681173325,0.0664487644531904,-0.336791402652258,0.213744793364745,-0.111460516928357,-0.191487448477398,0.192021561118301,-0.286680858812362,-0.0387042938539338,-0.0881268324752877,-0.0218997492321154,-0.88354475051838,0.151330299347462,-0.0318991510809555,-0.382387303403295,0,-0.123985445365555,0,0.448491557725897,0,-0.0422087399259597,-0.0381747454953754,-0.0370041729281331,0.151489654588375,0,-0.286538670535861,0.370214393705456,0,-0.127178974377949,0,0,-0.10545963609948,0.133132464456403,-0.0799774303644879,-0.00289364659090965,0,-0.194436421091056,0,0,-0.234971596482504,0.0367155824121813,0.0856034027394797,0.0174581586789039,-0.0511519066572007,-0.00857230389669394,-0.115971073434934,0,0,0.133258623301407,0,0,0.277463415989496,-0.0386533459181786,-0.619783323958633,-0.0644843548637385,-0.0353834651911289,-0.108622809454255,0,0,0.16456375727885,0.0449074472351597,-0.76570740527751,0,0,0.152942146016441,0,0,0,0,0,0,0,0,0,0,0,0,0.00018440226837324,0.147425675761417,0,0.0112752650593717,0,0,0,0,0.157079990756217,-0.0782972046976899,0,0,0.00972882613367232,0,-0.0374140129369405,0,0,0,0,0.00271514521156768,-0.0804260615662426,0.0856034027394797,-0.00905220596915053,0,0,0,0,-0.0412335425540516,0,0,0,0.0224537236175799,0.0993495337025533,-0.0971958902285415,0,0,0,-0.232046954366631,0,0,0,0,-0.053741879959476,0,0,-0.289838650142354,0,-0.171701545932373,0.301551005072048,0,0.121603750788584,-0.571027444792864,0.35613321600043,0,0.122810500528481,0.0108444883866824,0,0,0.208546712725529,0,0.122810500528481,0.0140450778534404,0,0,0,0,0.122810500528481,0,-0.0254725257767384,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0.0337946568887528,0.126214491106532,0.0449074472351597,0,0,0,0,0,0,-0.0241060230789031,-0.0666728324362572,0,0,0,0,0,0.0856034027394797,0,0,0.136058783831626,0,0,0,0,0,-0.0520849140074454,0,0,0,0,-0.564807121153884,0,0,-0.232454684958354,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0337609047207695,-0.445156091410246,0,0,0,0,0,0.122810500528481,0,-0.27483329820609,0,0,0,0,-0.0282809709694975,0,0,0,-0.104796384789156,0,0.0581205176786563,0,0,0,0,0,0,0.0224537236175799,0,0,0,0,0,0,0,0,0,0,0,0.0944209933115085,0,0,-0.139804279346511,0.00401112368825836,-0.231151962961127,-0.00589499941695548,0,0,-0.0510799371251695,0,0,0,0,0,0,0.0471995713495816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157079990756217,0,0,0,0,0,0,0.0079436575646515,0,0,0,0,0,0,0,-0.0530504490328978,0,0,0.165567985492043,0,0,0,0,0,0,-0.00349950915837649,-0.0792182606976951,-0.0901326348718791,0,0,0,-0.054385572482455,0,0,0,0.0449074472351597,0.151661160346141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.109219273882521,0,0,0,0,0,0,0,0,0,0,0,0,0.157079990756217,0,0.0449074472351597,0.0449074472351597,0,0,0.157079990756217,0,0,0,0.0828633536536719,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0902757291285625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5956437372986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,-0.108665824130299,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.208412519271687,0,0,0,0,-0.00272966342575912,0,0,0,0,0,0,0,0,0,0,0.342091523244026,0,0,0,0,0,0,0,0.0224537236175799,0,0,-0.130800107760024,0,0,-0.145067490033338,0,0,0,0,0,0,0,0,0,0,0,0,0.0614903213783548,0,0,0,0,0,0,0,0,0,0,-0.00352259499050898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.150724755562264,-0.369469973175683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0224537236175799,0.0428017013697398,0,0,0,0,0,0,0,0,0,0,0,0.0944209933115085,0,-0.0341312203285728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0072431987550959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645132549235442,0,0,0,0,0.0449074472351597,0,0,0,0.27219162017657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0934031043830947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779837998892975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0224537236175799,0,0,0,0,0,0,0,0,0,0.0224537236175799,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,0.0224537236175799,0,0.0449074472351597,0,0,-0.0211406041982221,0,0,0.0224537236175799,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122810500528481,0,0,0,0,0,0,-0.00128605989998204,0,0,0,0,0,0,0,0,0,0,0,0.0224537236175799,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191566442309445,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121094920551945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188841986623017,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0274842589040066,0.0224537236175799,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.133038561099505,0,0,0.00261997875804377,0,-0.163692210442696,0.064529685408385,0,0,0,0,0,-0.0695147852012049,0,0,0,0,0,0,0,0,0,0,0.0827342528039496,0.0449074472351597,0,0.101210691298583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449074472351597,0,0,0,0,0,-0.157261594794485,0,-0.0338756006286351,-0.03397785750627,0,0,-0.116855638024653,0.00781387877266287,0,-0.0477396614475454,0,0,0.097198725086271,0.219386023779372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0090641619986915,0,0.0856034027394797,0,-0.0119514989274394,0.441458891157299,0,-0.0820732115303281,0,0.0449074472351597,0.36012293778231,0,0,0,0.324669051058423 | ||
Line 101: | Line 101: | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.70652013438;ELK1,4_GABP{A,B1}:2.47713655955;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.01756271496;bHLH_family:1.85637541977;HOX{A6,A7,B6,B7}:1.8545014033;HES1:1.76531583895;E2F1..5:1.5000281673;NKX3-1:1.44673627788;FOXQ1:1.44324465993;ZNF143:1.39383147563;HIF1A:1.29468401848;VSX1,2:1.25324464657;ATF4:1.2506000609;NRF1:1.24403632226;RORA:1.23575221103;YY1:1.12302091081;CREB1:1.09767635229;NR6A1:1.00065725925;PBX1:0.973092515075;FOXN1:0.953893110721;NR5A1,2:0.933364843341;NKX2-1,4:0.846919470493;IKZF1:0.822550161654;CEBPA,B_DDIT3:0.806726947469;TBX4,5:0.77658260588;FOX{F1,F2,J1}:0.760832477749;AHR_ARNT_ARNT2:0.742781941421;MYB:0.670556214194;EN1,2:0.639120706336;RBPJ:0.638443282057;ARID5B:0.606446526457;ESRRA:0.604341611647;CRX:0.599510958427;BREu{core}:0.59178174078;PPARG:0.581833051262;NFY{A,B,C}:0.581424802446;STAT1,3:0.575224057407;TFDP1:0.574022617564;FOX{I1,J2}:0.5580360341;PRRX1,2:0.543614237585;ELF1,2,4:0.530741584487;HOXA9_MEIS1:0.516640770286;POU1F1:0.514382478005;ATF5_CREB3:0.512749560533;PITX1..3:0.505865745894;POU2F1..3:0.477406460753;HBP1_HMGB_SSRP1_UBTF:0.430595096872;HOX{A5,B5}:0.427116582387;GFI1:0.412007267888;PDX1:0.397658609994;LHX3,4:0.343800064936;FOXP1:0.337616878256;LMO2:0.329185537877;HLF:0.326789004476;FOXM1:0.311513664815;ZBTB16:0.304923861319;EVI1:0.268192616581;LEF1_TCF7_TCF7L1,2:0.265986058165;NKX6-1,2:0.265912902834;ZEB1:0.246726828404;TEAD1:0.243435012127;HNF4A_NR2F1,2:0.228924444837;TEF:0.201132034731;PAX1,9:0.197057020576;MEF2{A,B,C,D}:0.189493328552;ADNP_IRX_SIX_ZHX:0.175005005049;NANOG:0.082240742794;BPTF:0.0725219629553;CUX2:0.0693421747757;RXR{A,B,G}:0.0683458943433;PAX3,7:0.0635026978346;PAX2:0.0588017982585;IRF7:0.0530749220206;SNAI1..3:0.0501689977962;RFX1:0.0472486868078;DBP:0.0254751885912;GATA6:0.0170529605746;TP53:0.0141136924857;OCT4_SOX2{dimer}:0.00106135823773;FOX{D1,D2}:-0.00845652578332;NR1H4:-0.0159152086131;TLX1..3_NFIC{dimer}:-0.015915477507;POU5F1:-0.0278058871346;T:-0.0281048091737;JUN:-0.0479987245362;PAX4:-0.061530607852;FOXA2:-0.0651722610302;STAT5{A,B}:-0.0776546958569;RFX2..5_RFXANK_RFXAP:-0.0844332789921;POU6F1:-0.0846906499669;NFE2:-0.106067940896;AIRE:-0.137965545512;CDX1,2,4:-0.149004907731;ATF2:-0.180961125397;NFIL3:-0.18200314664;MYBL2:-0.184808323043;ATF6:-0.186280988396;FOXD3:-0.1890678855;ZNF423:-0.194285440222;TOPORS:-0.212788199299;SOX2:-0.219320694736;HMGA1,2:-0.221175858341;FOXL1:-0.237945008818;NFE2L2:-0.238194081158;HNF1A:-0.247554160708;PAX8:-0.250290488556;IRF1,2:-0.255802439471;HOX{A4,D4}:-0.260526251413;MAFB:-0.262008011744;GLI1..3:-0.279720382073;GTF2A1,2:-0.285174670908;SOX{8,9,10}:-0.296331481648;BACH2:-0.302250096498;SOX5:-0.303523533497;IKZF2:-0.30763114155;FOS_FOS{B,L1}_JUN{B,D}:-0.31756787509;NKX2-3_NKX2-5:-0.319887522889;ZNF148:-0.326017404296;CDC5L:-0.333554508143;ZBTB6:-0.341418572763;FOXO1,3,4:-0.359748307656;MYOD1:-0.360375540933;STAT2,4,6:-0.361653790698;ZFP161:-0.381963477838;NFE2L1:-0.396866279364;HIC1:-0.402793491619;NR3C1:-0.412457427496;NFKB1_REL_RELA:-0.422812811458;MTF1:-0.432117457562;FOXP3:-0.469020430037;AR:-0.472571998159;ZNF384:-0.480703567716;SPIB:-0.482777065946;FOSL2:-0.483572421454;DMAP1_NCOR{1,2}_SMARC:-0.494129787081;NKX3-2:-0.520250234445;PAX5:-0.528424398887;EBF1:-0.53878934472;XBP1:-0.541211097972;MED-1{core}:-0.551710942317;REST:-0.553761695047;HAND1,2:-0.564215725029;RXRA_VDR{dimer}:-0.564670489789;GZF1:-0.565188237976;SREBF1,2:-0.568376954334;RUNX1..3:-0.575382708857;NKX2-2,8:-0.575923393895;SPI1:-0.579228150354;MTE{core}:-0.580224096752;EP300:-0.585592832095;KLF4:-0.612880190383;GTF2I:-0.616432956061;UFEwm:-0.639599749093;NHLH1,2:-0.667920686794;NFIX:-0.676715924569;ETS1,2:-0.68646579117;TAL1_TCF{3,4,12}:-0.700711534649;ESR1:-0.728090326509;GFI1B:-0.730193323315;TFAP2{A,C}:-0.734062994595;GCM1,2:-0.746688062952;ONECUT1,2:-0.75327221215;ALX4:-0.767083196553;SRF:-0.792301696047;TFAP2B:-0.799940491682;RREB1:-0.833187375145;HSF1,2:-0.857240426245;SOX17:-0.873492247962;MAZ:-0.887112420934;TBP:-0.911237320166;PRDM1:-0.911877158544;POU3F1..4:-0.912304968674;MYFfamily:-0.997442687091;PATZ1:-1.0176501573;ZNF238:-1.02519501217;EGR1..3:-1.0418087735;ALX1:-1.04396416462;MZF1:-1.09396693022;PAX6:-1.11266399213;TLX2:-1.11455716278;TGIF1:-1.11954784659;NFATC1..3:-1.13260615601;SP1:-1.16124136206;XCPE1{core}:-1.19671531234;ZIC1..3:-1.29814853282;GATA4:-1.38233522178;NANOG{mouse}:-1.44273104423;TFCP2:-1.58941646746;SMAD1..7,9:-1.61436912623;HMX1:-1.73308112872;TFAP4:-2.0746764094;SPZ1:-2.49989115833 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.70652013438;ELK1,4_GABP{A,B1}:2.47713655955;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.01756271496;bHLH_family:1.85637541977;HOX{A6,A7,B6,B7}:1.8545014033;HES1:1.76531583895;E2F1..5:1.5000281673;NKX3-1:1.44673627788;FOXQ1:1.44324465993;ZNF143:1.39383147563;HIF1A:1.29468401848;VSX1,2:1.25324464657;ATF4:1.2506000609;NRF1:1.24403632226;RORA:1.23575221103;YY1:1.12302091081;CREB1:1.09767635229;NR6A1:1.00065725925;PBX1:0.973092515075;FOXN1:0.953893110721;NR5A1,2:0.933364843341;NKX2-1,4:0.846919470493;IKZF1:0.822550161654;CEBPA,B_DDIT3:0.806726947469;TBX4,5:0.77658260588;FOX{F1,F2,J1}:0.760832477749;AHR_ARNT_ARNT2:0.742781941421;MYB:0.670556214194;EN1,2:0.639120706336;RBPJ:0.638443282057;ARID5B:0.606446526457;ESRRA:0.604341611647;CRX:0.599510958427;BREu{core}:0.59178174078;PPARG:0.581833051262;NFY{A,B,C}:0.581424802446;STAT1,3:0.575224057407;TFDP1:0.574022617564;FOX{I1,J2}:0.5580360341;PRRX1,2:0.543614237585;ELF1,2,4:0.530741584487;HOXA9_MEIS1:0.516640770286;POU1F1:0.514382478005;ATF5_CREB3:0.512749560533;PITX1..3:0.505865745894;POU2F1..3:0.477406460753;HBP1_HMGB_SSRP1_UBTF:0.430595096872;HOX{A5,B5}:0.427116582387;GFI1:0.412007267888;PDX1:0.397658609994;LHX3,4:0.343800064936;FOXP1:0.337616878256;LMO2:0.329185537877;HLF:0.326789004476;FOXM1:0.311513664815;ZBTB16:0.304923861319;EVI1:0.268192616581;LEF1_TCF7_TCF7L1,2:0.265986058165;NKX6-1,2:0.265912902834;ZEB1:0.246726828404;TEAD1:0.243435012127;HNF4A_NR2F1,2:0.228924444837;TEF:0.201132034731;PAX1,9:0.197057020576;MEF2{A,B,C,D}:0.189493328552;ADNP_IRX_SIX_ZHX:0.175005005049;NANOG:0.082240742794;BPTF:0.0725219629553;CUX2:0.0693421747757;RXR{A,B,G}:0.0683458943433;PAX3,7:0.0635026978346;PAX2:0.0588017982585;IRF7:0.0530749220206;SNAI1..3:0.0501689977962;RFX1:0.0472486868078;DBP:0.0254751885912;GATA6:0.0170529605746;TP53:0.0141136924857;OCT4_SOX2{dimer}:0.00106135823773;FOX{D1,D2}:-0.00845652578332;NR1H4:-0.0159152086131;TLX1..3_NFIC{dimer}:-0.015915477507;POU5F1:-0.0278058871346;T:-0.0281048091737;JUN:-0.0479987245362;PAX4:-0.061530607852;FOXA2:-0.0651722610302;STAT5{A,B}:-0.0776546958569;RFX2..5_RFXANK_RFXAP:-0.0844332789921;POU6F1:-0.0846906499669;NFE2:-0.106067940896;AIRE:-0.137965545512;CDX1,2,4:-0.149004907731;ATF2:-0.180961125397;NFIL3:-0.18200314664;MYBL2:-0.184808323043;ATF6:-0.186280988396;FOXD3:-0.1890678855;ZNF423:-0.194285440222;TOPORS:-0.212788199299;SOX2:-0.219320694736;HMGA1,2:-0.221175858341;FOXL1:-0.237945008818;NFE2L2:-0.238194081158;HNF1A:-0.247554160708;PAX8:-0.250290488556;IRF1,2:-0.255802439471;HOX{A4,D4}:-0.260526251413;MAFB:-0.262008011744;GLI1..3:-0.279720382073;GTF2A1,2:-0.285174670908;SOX{8,9,10}:-0.296331481648;BACH2:-0.302250096498;SOX5:-0.303523533497;IKZF2:-0.30763114155;FOS_FOS{B,L1}_JUN{B,D}:-0.31756787509;NKX2-3_NKX2-5:-0.319887522889;ZNF148:-0.326017404296;CDC5L:-0.333554508143;ZBTB6:-0.341418572763;FOXO1,3,4:-0.359748307656;MYOD1:-0.360375540933;STAT2,4,6:-0.361653790698;ZFP161:-0.381963477838;NFE2L1:-0.396866279364;HIC1:-0.402793491619;NR3C1:-0.412457427496;NFKB1_REL_RELA:-0.422812811458;MTF1:-0.432117457562;FOXP3:-0.469020430037;AR:-0.472571998159;ZNF384:-0.480703567716;SPIB:-0.482777065946;FOSL2:-0.483572421454;DMAP1_NCOR{1,2}_SMARC:-0.494129787081;NKX3-2:-0.520250234445;PAX5:-0.528424398887;EBF1:-0.53878934472;XBP1:-0.541211097972;MED-1{core}:-0.551710942317;REST:-0.553761695047;HAND1,2:-0.564215725029;RXRA_VDR{dimer}:-0.564670489789;GZF1:-0.565188237976;SREBF1,2:-0.568376954334;RUNX1..3:-0.575382708857;NKX2-2,8:-0.575923393895;SPI1:-0.579228150354;MTE{core}:-0.580224096752;EP300:-0.585592832095;KLF4:-0.612880190383;GTF2I:-0.616432956061;UFEwm:-0.639599749093;NHLH1,2:-0.667920686794;NFIX:-0.676715924569;ETS1,2:-0.68646579117;TAL1_TCF{3,4,12}:-0.700711534649;ESR1:-0.728090326509;GFI1B:-0.730193323315;TFAP2{A,C}:-0.734062994595;GCM1,2:-0.746688062952;ONECUT1,2:-0.75327221215;ALX4:-0.767083196553;SRF:-0.792301696047;TFAP2B:-0.799940491682;RREB1:-0.833187375145;HSF1,2:-0.857240426245;SOX17:-0.873492247962;MAZ:-0.887112420934;TBP:-0.911237320166;PRDM1:-0.911877158544;POU3F1..4:-0.912304968674;MYFfamily:-0.997442687091;PATZ1:-1.0176501573;ZNF238:-1.02519501217;EGR1..3:-1.0418087735;ALX1:-1.04396416462;MZF1:-1.09396693022;PAX6:-1.11266399213;TLX2:-1.11455716278;TGIF1:-1.11954784659;NFATC1..3:-1.13260615601;SP1:-1.16124136206;XCPE1{core}:-1.19671531234;ZIC1..3:-1.29814853282;GATA4:-1.38233522178;NANOG{mouse}:-1.44273104423;TFCP2:-1.58941646746;SMAD1..7,9:-1.61436912623;HMX1:-1.73308112872;TFAP4:-2.0746764094;SPZ1:-2.49989115833 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10552-107I3;search_select_hide=table117:FF:10552-107I3 | |||
}} | }} |
Latest revision as of 14:29, 3 June 2020
Name: | cervical cancer cell line:D98-AH2 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs11288 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
---|
ExpandCAGE Accession numbers |
---|
ExpandDownload raw sequence, BAM & CTSS |
---|
ExpandHumanCAGEScan Download raw sequence, BAM & CTSS |
---|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11288
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11288
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11288
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101967 cervical cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)