FFCP PHASE1:Hg19::chr11:66139128..66139152,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:66139128..66139152,- to FFCP PHASE1:Hg19::chr11:66139128..66139152,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3177 | |EntrezGene=3177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11004 | |HGNC=11004 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-10bp_to_ENST00000541567_5end | |||
|cluster_id=chr11:66139128..66139152,- | |||
|coexpression_cluster_id=C3192 | |||
|description=CAGE_peak_3_at_SLC29A2_5end | |||
|id=chr11:66139128..66139152,- | |||
|ontology_enrichment_celltype=CL:0000066!5.70e-30!254;CL:0002076!1.70e-14!43;CL:0000223!6.65e-12!59;CL:0000039!1.06e-07!7;CL:0000586!1.06e-07!7;CL:0002368!1.49e-07!13;CL:0000082!3.37e-07!19;CL:0002251!4.33e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.36e-13;42!CL:0000039;7.78e-13;7!CL:0000586;7.78e-13;7!CL:0002368;1.59e-09;13!CL:0002202;1.99e-07;9!CL:0002632;1.99e-07;9!CL:0002322;2.72e-07;5!CL:0002251;5.38e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.22e-33,253;CL:0002076,2.54e-17,42;CL:0000223,2.29e-15,58;CL:0000039,9.58e-13,7;CL:0000586,9.58e-13,7;CL:0002368,1.75e-09,13;CL:0002202,1.62e-07,9;CL:0002632,1.62e-07,9;CL:0002322,1.65e-07,5;CL:0002251,5.20e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;4.12e-08;58!UBERON:0008947;2.29e-07;29 | |||
|ontology_enrichment_disease=DOID:0050687!9.92e-39!143;DOID:305!1.09e-38!106;DOID:162!7.15e-25!235;DOID:14566!2.07e-23!239;DOID:299!5.44e-13!25;DOID:3095!1.08e-09!22;DOID:2994!1.08e-09!22;DOID:1749!7.27e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:305;3.68e-14;106!DOID:299;1.12e-11;25!DOID:1749;1.32e-11;14!DOID:0050687;2.20e-08;143!DOID:5093;4.17e-08;4!DOID:1612;4.17e-08;4!DOID:3095;1.30e-07;22!DOID:2994;1.30e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.60e-43,106;DOID:0050687,9.54e-38,143;DOID:162,9.51e-22,235;DOID:14566,7.77e-21,239;DOID:1749,7.34e-12,14;DOID:299,9.15e-12,25;DOID:5093,4.70e-08,4;DOID:1612,4.70e-08,4;DOID:3095,1.53e-07,22;DOID:2994,1.53e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.29e-19!169;UBERON:0000925!9.29e-19!169;UBERON:0006595!9.29e-19!169;UBERON:0001007!6.60e-16!155;UBERON:0001555!6.60e-16!155;UBERON:0007026!6.60e-16!155;UBERON:0001004!8.10e-16!72;UBERON:0000065!2.92e-15!53;UBERON:0004921!3.91e-15!129;UBERON:0004185!3.91e-15!129;UBERON:0008947!1.61e-14!38;UBERON:0003258!1.61e-14!38;UBERON:0000077!3.74e-14!130;UBERON:0001041!1.35e-13!98;UBERON:0000072!2.17e-12!46;UBERON:0000464!3.39e-10!104;UBERON:0005153!9.45e-10!37;UBERON:0005911!9.28e-09!82;UBERON:0005178!1.50e-08!34;UBERON:0002224!1.50e-08!34;UBERON:0000466!3.07e-08!126;UBERON:0002048!3.68e-08!22;UBERON:0000117!3.68e-08!22;UBERON:0000171!3.68e-08!22;UBERON:0000170!3.68e-08!22;UBERON:0005597!3.68e-08!22;UBERON:0000118!3.68e-08!22;UBERON:0005181!4.52e-08!35;UBERON:0005177!7.68e-08!107;UBERON:0000063!1.04e-07!97;UBERON:0004802!3.37e-07!19;UBERON:0000115!3.37e-07!19;UBERON:0001737!5.47e-07!9;UBERON:0000915!7.60e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;4.36e-10;37!UBERON:0000065;1.37e-09;44!UBERON:0001737;2.74e-09;9!UBERON:0001557;2.74e-09;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.52e-13,160;UBERON:0000925,4.52e-13,160;UBERON:0006595,4.52e-13,160;UBERON:0001004,9.58e-12,74;UBERON:0000065,1.33e-11,54;UBERON:0008947,4.08e-11,38;UBERON:0003258,4.08e-11,38;UBERON:0000072,6.85e-11,47;UBERON:0001007,1.09e-10,145;UBERON:0001555,1.09e-10,145;UBERON:0007026,1.09e-10,145;UBERON:0004921,4.29e-10,118;UBERON:0001737,2.38e-09,9;UBERON:0001041,5.42e-09,87;UBERON:0001557,7.92e-07,19 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,1.22866968250754,4.18680700783456,0,0.791300934685361,0,0,0,0,0,0,0,0.204000691244253,0.313454721478088,0,0,0.125542639594803,0.0764134057479513,0.164201178899891,0.0787107813136792,0,0,0,1.83884244895785,2.409647350226,0.739508020333575,0.232401601740905,0.710846162437108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.458426764241994,4.00724817121796,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0.286804595389004,2.5614478287215,1.72288698817931,1.39432731443422,1.55491582523056,4.54177531576131,1.09493207722749,0,0,0,0,0,2.12952240071719,1.51726221070292,2.41011029883482,1.7647035637183,0.871517776369625,1.66089433377768,2.02246962240247,2.15843611637881,2.30848294167834,0,0,0,0,0,0,0,0,3.07471096357784,0,0.98775256867763,0,0.703702806881416,2.03694579348765,0,0,0,0,0,0,0,0,3.1608175918371,8.58486162094873,0,0,0,0,0.335964256397719,0.283550194484773,0.179117045405697,1.45316969256981,0.766765358330422,0,0,0.207328115540772,0.144119953416961,0,0,0.381988425558278,0,0,0.308482478109971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02148623979056,0.40101294060657,1.74953878978203,0,0,0,2.70719767744447,2.46449078734127,6.27479815341484,0,0.949964660035881,0,0,0,0,0,0,4.07802036872061,9.97291210714469,2.46262230194396,0,0,0,0.328014645699706,0,0.618246069886334,0,0,1.14853107599234,0.650060246036521,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,1.15699440752685,0.576570202095319,2.04180339991335,1.31505115112215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,1.34710957815717,4.69211592875051,2.17781969722645,0.282431402330337,1.29151611801369,1.68471475667626,0.443430153536676,0.689170200620878,0,0,0,0.238231775457789,0,0,0,0,0.534120355637366,0,3.67560323971548,0,0,0,0.159426272728822,0.798317485731266,0,0,0,0,0,0.313359791546046,0,0,0,0.201799707191048,0.425846237690326,0,0,0,0,0,0,0,0,0,0,9.54416756081921,0.146508179271894,0.485442086998054,0,0,1.67121139316383,0,0.307160702099232,0,0,0,0.16480387422676,0.211125408127993,0,0.276283915531148,0.755798243562828,0.20453736500431,0.246169610922139,0,2.51631383212515,2.32727527078292,0,0,0,0,0.969332746095218,0,0,7.0315495493013,15.9177199993076,1.44999915086959,3.52759689685049,3.81380475439149,7.09163045303809,1.03423011972439,0.874813840149763,0.173624994933292,0,0,0,0.110579259931225,0.591095237907095,0,1.41620002574687,0.83654246567162,0.0769502585037971,0,9.91424788868659,9.15527972979676,13.146332002563,1.27600463892768,0.274792780205587,1.5991043280559,1.02193298195737,0.31396051279005,0,2.03036094555463,1.9606253431774,1.67821586975843,2.27704479269022,0.635746315921515,2.3209787098083,0.489698424477443,3.1097675715467,0.432777279484182,3.98104772431402,0.353830258013357,0,0.296521128680622,0.247127877893006,0.104421949505455,0,0,0,0.364909578431332,4.69595085437015,1.21390189767046,0.394584402849391,0,0,0,0.150323419414493,0.311064574191741,1.32930774541437,0.330991955875499,0.313932918407225,0,3.41531455235751,0,3.47119476670262,1.27390116638691,4.09178270927892,0.873633341210151,0,4.35403490800883,5.11625219603299,4.76269650908614,0.193978032976839,0.0882561266915003,0.225980740780532,0.137041924646751,0,0,5.86654148204409,3.68730573157055,0.213452994739353,0.599428828746391,3.89044126316086,0.572682980829578,0,0.14405479798815,0.621262677827163,4.71388069233591,0,0,0,0,0,0,0,0,0,0,0,0,7.38812301846267,0,0.223171457441873,0.134366944973453,0,2.32991899054908,0,0,0.0674035438541849,0,1.6087933092499,0,0,4.01882871162548,2.20063098555574,1.66176135211674,0,0,0,0,3.07342258466873,3.88163952198986,0.950403028674658,0.717149357331379,6.33320151154169,0,0,0.76280561296425,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0.684347351537318,8.45778026780006,0.640724475406168,0.314408610199332,0.414239055347196,0.496166021811951,0.592834895693833,0.243585196761792,3.83004754662109,0,0,0,0,3.29813602125492,0,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,0.276697269872462,0,0,0.285465333544967,0,3.27834434064817,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0.491545817507439,1.69049698686902,0,0,0,0,0,3.35710818526667,4.97661808026378,0.255788742607303,0.107824811396682,0.943595651135378,0.218419276384028,5.43144095852881,0,0.2478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| 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| ||
|short_description=p3@SLC29A2 | |||
}} | }} |
Latest revision as of 14:17, 19 September 2015
Short description: | p3@SLC29A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC29A2_5end |
Coexpression cluster: | C3192_choriocarcinoma_rectal_breast_pancreatic_adenocarcinoma_Alveolar_Renal |
Association with transcript: | -10bp_to_ENST00000541567_5end |
EntrezGene: | SLC29A2 |
HGNC: | 11004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.22e-33 | 253 |
endo-epithelial cell | 2.54e-17 | 42 |
endodermal cell | 2.29e-15 | 58 |
germ line cell | 9.58e-13 | 7 |
germ cell | 9.58e-13 | 7 |
respiratory epithelial cell | 1.75e-09 | 13 |
epithelial cell of tracheobronchial tree | 1.62e-07 | 9 |
epithelial cell of lower respiratory tract | 1.62e-07 | 9 |
embryonic stem cell | 1.65e-07 | 5 |
epithelial cell of alimentary canal | 5.20e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.52e-13 | 160 |
endoderm | 4.52e-13 | 160 |
presumptive endoderm | 4.52e-13 | 160 |
respiratory system | 9.58e-12 | 74 |
respiratory tract | 1.33e-11 | 54 |
respiratory primordium | 4.08e-11 | 38 |
endoderm of foregut | 4.08e-11 | 38 |
segment of respiratory tract | 6.85e-11 | 47 |
digestive system | 1.09e-10 | 145 |
digestive tract | 1.09e-10 | 145 |
primitive gut | 1.09e-10 | 145 |
subdivision of digestive tract | 4.29e-10 | 118 |
larynx | 2.38e-09 | 9 |
foregut | 5.42e-09 | 87 |
upper respiratory tract | 7.92e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.60e-43 | 106 |
cell type cancer | 9.54e-38 | 143 |
cancer | 9.51e-22 | 235 |
disease of cellular proliferation | 7.77e-21 | 239 |
squamous cell carcinoma | 7.34e-12 | 14 |
adenocarcinoma | 9.15e-12 | 25 |
thoracic cancer | 4.70e-08 | 4 |
breast cancer | 4.70e-08 | 4 |
germ cell and embryonal cancer | 1.53e-07 | 22 |
germ cell cancer | 1.53e-07 | 22 |