FFCP PHASE1:Hg19::chr11:70507901..70507958,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:70507901..70507958,- to FFCP PHASE1:Hg19::chr11:70507901..70507958,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22941 | |EntrezGene=22941 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14295 | |HGNC=14295 | ||
|TSSclassifier=strong | |||
|UniProt=E7EX50,B7ZKU9,C0SPH0 | |UniProt=E7EX50,B7ZKU9,C0SPH0 | ||
|association_with_transcript=0bp_to_ENST00000357171,ENST00000449116,ENST00000449833,NM_133266,uc001opz.2,uc010rqn.1,uc010rqp.1_5end | |||
|cluster_id=chr11:70507901..70507958,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_3_at_SHANK2_5end | |||
|id=chr11:70507901..70507958,- | |||
|ontology_enrichment_celltype=CL:0000047!2.71e-09!8;CL:0002322!1.12e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000047;3.19e-07;2!CL:0000333;7.04e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.37e-09,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.30e-19;82!UBERON:0010122;4.85e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.78e-62!94;UBERON:0001016!1.78e-62!94;UBERON:0005743!4.92e-61!86;UBERON:0001017!1.35e-60!82;UBERON:0001049!5.25e-57!57;UBERON:0005068!5.25e-57!57;UBERON:0006241!5.25e-57!57;UBERON:0007135!5.25e-57!57;UBERON:0002780!9.76e-50!41;UBERON:0001890!9.76e-50!41;UBERON:0006240!9.76e-50!41;UBERON:0002616!1.26e-49!59;UBERON:0003080!2.92e-48!42;UBERON:0000955!3.51e-48!69;UBERON:0006238!3.51e-48!69;UBERON:0003075!1.47e-47!86;UBERON:0007284!1.47e-47!86;UBERON:0002346!2.99e-46!90;UBERON:0001869!7.19e-46!32;UBERON:0001893!1.42e-45!34;UBERON:0002020!3.91e-45!34;UBERON:0003528!3.91e-45!34;UBERON:0002791!6.36e-44!33;UBERON:0003056!1.93e-36!61;UBERON:0000956!8.02e-35!25;UBERON:0000203!8.02e-35!25;UBERON:0002619!2.15e-34!22;UBERON:0007023!4.40e-32!115;UBERON:0004121!5.96e-32!169;UBERON:0000924!9.91e-32!173;UBERON:0006601!9.91e-32!173;UBERON:0001950!2.88e-31!20;UBERON:0000033!7.80e-28!123;UBERON:0000153!9.90e-26!129;UBERON:0007811!9.90e-26!129;UBERON:0000025!6.20e-15!194;UBERON:0002420!4.49e-12!9;UBERON:0007245!4.49e-12!9;UBERON:0010009!4.49e-12!9;UBERON:0010011!4.49e-12!9;UBERON:0000454!4.49e-12!9;UBERON:0002308!1.31e-11!9;UBERON:0000125!1.31e-11!9;UBERON:0000200!4.33e-11!6;UBERON:0001871!7.67e-11!7;UBERON:0004111!1.76e-10!241;UBERON:0003076!3.05e-10!15;UBERON:0003057!3.05e-10!15;UBERON:0004732!4.32e-10!13;UBERON:0001872!1.17e-09!5;UBERON:0000349!1.94e-09!5;UBERON:0002021!2.04e-09!5;UBERON:0009663!4.02e-09!7;UBERON:0004733!7.54e-09!12;UBERON:0002028!7.54e-09!12;UBERON:0007277!7.54e-09!12;UBERON:0000369!3.27e-08!4;UBERON:0002435!3.27e-08!4;UBERON:0000204!3.27e-08!4;UBERON:0010082!3.27e-08!4;UBERON:0000483!3.33e-08!309;UBERON:0000064!3.71e-08!219;UBERON:0000119!5.84e-08!312;UBERON:0000475!8.44e-08!365;UBERON:0000477!1.13e-07!286;UBERON:0002680!1.59e-07!9;UBERON:0001895!1.59e-07!9;UBERON:0010092!1.59e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.94e-72;32!UBERON:0001893;1.54e-70;34!UBERON:0002619;4.63e-68;22!UBERON:0002791;7.70e-68;32!UBERON:0003528;6.63e-66;34!UBERON:0002020;6.63e-66;34!UBERON:0002780;1.77e-65;41!UBERON:0001890;1.77e-65;41!UBERON:0001950;9.49e-62;20!UBERON:0000956;1.70e-59;25!UBERON:0000203;1.70e-59;25!UBERON:0000073;5.78e-49;53!UBERON:0002616;5.78e-49;53!UBERON:0001017;4.80e-34;75!UBERON:0000955;5.06e-34;68!UBERON:0001016;4.09e-31;83!UBERON:0002420;3.84e-23;9!UBERON:0007245;3.84e-23;9!UBERON:0010009;3.84e-23;9!UBERON:0010011;3.84e-23;9!UBERON:0000454;3.84e-23;9!UBERON:0000200;1.34e-20;6!UBERON:0001872;7.96e-18;5!UBERON:0000125;1.32e-17;9!UBERON:0002308;1.32e-17;9!UBERON:0001871;2.39e-17;6!UBERON:0000349;2.70e-17;5!UBERON:0002021;3.24e-17;5!UBERON:0009663;3.26e-17;7!UBERON:0000369;7.19e-15;4!UBERON:0002435;7.19e-15;4!UBERON:0000204;7.19e-15;4!UBERON:0007023;2.44e-14;114!UBERON:0011216;1.16e-11;132!UBERON:0005383;1.79e-11;3!UBERON:0005382;1.79e-11;3!UBERON:0001894;3.56e-11;7!UBERON:0001870;4.13e-11;3!UBERON:0001873;4.85e-08;2!UBERON:0010314;5.06e-08;132!UBERON:0002771;7.19e-08;2!UBERON:0001954;7.19e-08;2!UBERON:0003022;7.19e-08;2!UBERON:0002421;7.19e-08;2!UBERON:0002600;7.19e-08;2!UBERON:0002702;7.96e-08;2!UBERON:0001876;1.01e-07;2!UBERON:0000007;2.02e-07;2!UBERON:0001897;3.87e-07;2!UBERON:0010225;3.87e-07;2!UBERON:0001875;4.54e-07;2!UBERON:0005162;4.54e-07;2!UBERON:0000122;4.54e-07;2!UBERON:0006514;4.54e-07;2!UBERON:0000013;7.04e-07;5!UBERON:0002410;7.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.17e-91,89;UBERON:0002780,2.98e-91,41;UBERON:0001890,2.98e-91,41;UBERON:0003080,2.98e-91,41;UBERON:0006240,2.98e-91,41;UBERON:0001017,3.62e-86,81;UBERON:0000073,5.78e-86,53;UBERON:0002616,5.78e-86,53;UBERON:0001049,4.01e-85,56;UBERON:0005068,4.01e-85,56;UBERON:0006241,4.01e-85,56;UBERON:0007135,4.01e-85,56;UBERON:0001893,1.32e-81,34;UBERON:0001869,1.90e-81,32;UBERON:0003528,6.44e-76,34;UBERON:0002020,6.44e-76,34;UBERON:0002791,1.53e-75,32;UBERON:0000955,1.66e-75,68;UBERON:0006238,1.66e-75,68;UBERON:0002619,4.80e-68,22;UBERON:0003056,2.29e-62,61;UBERON:0001950,9.83e-62,20;UBERON:0000956,1.75e-59,25;UBERON:0000203,1.75e-59,25;UBERON:0003075,2.88e-58,82;UBERON:0007284,2.88e-58,82;UBERON:0002346,4.14e-55,86;UBERON:0007023,4.92e-44,114;UBERON:0010371,7.00e-44,104;UBERON:0004121,1.11e-42,171;UBERON:0000924,1.11e-42,171;UBERON:0006601,1.11e-42,171;UBERON:0010314,2.43e-36,132;UBERON:0011216,5.17e-33,223;UBERON:0002420,4.72e-23,9;UBERON:0007245,4.72e-23,9;UBERON:0010009,4.72e-23,9;UBERON:0010011,4.72e-23,9;UBERON:0000454,4.72e-23,9;UBERON:0000200,1.32e-20,6;UBERON:0000025,2.04e-20,192;UBERON:0001872,9.62e-18,5;UBERON:0000125,1.58e-17,9;UBERON:0002308,1.58e-17,9;UBERON:0001871,2.32e-17,6;UBERON:0000349,2.65e-17,5;UBERON:0002021,2.93e-17,5;UBERON:0009663,3.98e-17,7;UBERON:0004111,2.81e-15,240;UBERON:0000369,7.45e-15,4;UBERON:0002435,7.45e-15,4;UBERON:0000204,7.45e-15,4;UBERON:0010082,7.45e-15,4;UBERON:0005383,1.88e-11,3;UBERON:0005382,1.88e-11,3;UBERON:0001894,3.41e-11,7;UBERON:0006222,3.41e-11,7;UBERON:0001870,3.99e-11,3;UBERON:0000483,8.01e-10,306;UBERON:0000119,1.24e-09,309;UBERON:0001873,5.11e-08,2;UBERON:0010122,5.11e-08,2;UBERON:0002771,6.95e-08,2;UBERON:0001954,7.19e-08,2;UBERON:0003022,7.19e-08,2;UBERON:0002421,7.19e-08,2;UBERON:0002600,7.19e-08,2;UBERON:0002702,7.96e-08,2;UBERON:0001876,1.01e-07,2;UBERON:0000923,1.37e-07,560;UBERON:0010316,1.37e-07,560;UBERON:0005291,1.37e-07,560;UBERON:0006598,1.37e-07,560;UBERON:0010317,1.37e-07,560;UBERON:0002532,1.37e-07,560;UBERON:0002050,1.91e-07,564;UBERON:0000007,1.96e-07,2;UBERON:0001897,3.75e-07,2;UBERON:0010225,3.75e-07,2;UBERON:0005162,3.87e-07,2;UBERON:0000122,3.87e-07,2;UBERON:0000922,4.67e-07,592;UBERON:0001875,5.49e-07,2;UBERON:0006514,5.49e-07,2;UBERON:0000013,7.05e-07,5;UBERON:0002410,7.05e-07,5;UBERON:0005423,7.45e-07,581 | |||
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| ||
|short_description=p3@SHANK2 | |||
}} | }} |
Latest revision as of 23:12, 19 September 2015
Short description: | p3@SHANK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHANK2_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000357171, ENST00000449116, ENST00000449833, NM_133266, uc001opz.2, uc010rqn.1, uc010rqp.1_5end |
EntrezGene: | SHANK2 |
HGNC: | 14295 |
UniProt: | E7EX50B7ZKU9C0SPH0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.37e-09 | 8 |