FFCP PHASE1:Hg19::chr12:119772487..119772496,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=160777 | |EntrezGene=160777 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28610 | |HGNC=28610 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IWA6,F5H2N8 | |UniProt=Q8IWA6,F5H2N8 | ||
|association_with_transcript=-20bp_to_ENST00000327554,ENST00000536742,NM_178499,uc001txe.2_5end | |||
|cluster_id=chr12:119772487..119772496,+ | |||
|coexpression_cluster_id=C111 | |||
|description=CAGE_peak_3_at_CCDC60_5end | |||
|id=chr12:119772487..119772496,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.84e-14;10!UBERON:0005564;2.84e-14;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.41e-24!115;UBERON:0001896!1.15e-16!3;UBERON:0005290!1.15e-16!3;UBERON:0010096!1.15e-16!3;UBERON:0002298!2.57e-16!8;UBERON:0002308!3.38e-14!9;UBERON:0000125!3.38e-14!9;UBERON:0000369!3.07e-12!4;UBERON:0002435!3.07e-12!4;UBERON:0000204!3.07e-12!4;UBERON:0010082!3.07e-12!4;UBERON:0003076!5.01e-12!15;UBERON:0003057!5.01e-12!15;UBERON:0003127!9.08e-12!2;UBERON:0001873!1.61e-11!2;UBERON:0010122!1.61e-11!2;UBERON:0000341!2.32e-11!2;UBERON:0002148!2.44e-11!2;UBERON:0009662!2.44e-11!2;UBERON:0004733!8.67e-11!12;UBERON:0002028!8.67e-11!12;UBERON:0007277!8.67e-11!12;UBERON:0001049!2.49e-10!57;UBERON:0005068!2.49e-10!57;UBERON:0006241!2.49e-10!57;UBERON:0007135!2.49e-10!57;UBERON:0004732!6.17e-10!13;UBERON:0003075!1.70e-08!86;UBERON:0007284!1.70e-08!86;UBERON:0005743!2.29e-08!86;UBERON:0002616!2.99e-08!59;UBERON:0002346!5.36e-08!90;UBERON:0005383!5.93e-08!3;UBERON:0005382!5.93e-08!3;UBERON:0000988!7.79e-08!3;UBERON:0006331!7.79e-08!3;UBERON:0000153!1.98e-07!129;UBERON:0007811!1.98e-07!129;UBERON:0000073!2.50e-07!94;UBERON:0001016!2.50e-07!94;UBERON:0009663!3.52e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;7.05e-18;2!UBERON:0000473;1.44e-17;8!UBERON:0003135;4.52e-13;11!UBERON:0001896;3.06e-12;3!UBERON:0005290;3.06e-12;3!UBERON:0000991;2.60e-07;21!UBERON:0003101;5.09e-07;22!UBERON:0000079;5.09e-07;22!UBERON:0002298;9.23e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,6.48e-18,2;UBERON:0000473,1.44e-17,8;UBERON:0003135,4.52e-13,11;UBERON:0001896,3.24e-12,3;UBERON:0005290,3.24e-12,3;UBERON:0010096,3.24e-12,3;UBERON:0000991,2.60e-07,21;UBERON:0009196,2.60e-07,21;UBERON:0009117,2.60e-07,21;UBERON:0005564,2.60e-07,21;UBERON:0004176,5.09e-07,22;UBERON:0003101,5.09e-07,22;UBERON:0000079,5.09e-07,22;UBERON:0002298,9.49e-07,6 | |||
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|short_description=p3@CCDC60 | |||
}} | }} |
Latest revision as of 18:35, 16 September 2015
Short description: | p3@CCDC60 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CCDC60_5end |
Coexpression cluster: | C111_medulla_lung_trachea_testis_caudate_epididymis_throat |
Association with transcript: | -20bp_to_ENST00000327554, ENST00000536742, NM_178499, uc001txe.2_5end |
EntrezGene: | CCDC60 |
HGNC: | 28610 |
UniProt: | Q8IWA6F5H2N8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 6.48e-18 | 2 |
testis | 1.44e-17 | 8 |
male reproductive organ | 4.52e-13 | 11 |
medulla oblongata | 3.24e-12 | 3 |
myelencephalon | 3.24e-12 | 3 |
future myelencephalon | 3.24e-12 | 3 |
gonad | 2.60e-07 | 21 |
indifferent external genitalia | 2.60e-07 | 21 |
indifferent gonad | 2.60e-07 | 21 |
gonad primordium | 2.60e-07 | 21 |
external genitalia | 5.09e-07 | 22 |
male organism | 5.09e-07 | 22 |
male reproductive system | 5.09e-07 | 22 |
brainstem | 9.49e-07 | 6 |