FFCP PHASE1:Hg19::chr12:57623787..57623800,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z9F1,P34897,Q5BJF5,Q5HYG8 | |UniProt=B7Z9F1,P34897,Q5BJF5,Q5HYG8 | ||
|association_with_transcript=-27bp_to_NM_001166358,NR_029416_5end | |||
|cluster_id=chr12:57623787..57623800,+ | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_27_at_SHMT2_5end | |||
|id=chr12:57623787..57623800,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000222;5.97e-34;1!CL:0002554;6.48e-18;2!CL:0000860;3.41e-08;33!CL:0002057;3.41e-08;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002554,6.48e-18,2;CL:0000860,8.52e-08,42;CL:0002057,8.52e-08,42;CL:0000473,6.65e-07,48;CL:0000234,6.65e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0.309706370895104,0,0,0,0,0,0,0,0,0,0.306083892370903,0.641858054152187,0,0,0,0,0,0.56738522469114,1.24564449799115,0,0,0,0,1.84138817993782,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0.468642863667593,0,0,0.149448680551801,0,0,0,0,0,0,0,0.494533858557114,0,2.87447256726495,0,0,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0.18611685633159,0.168776332241266,0,0,0.184099797284599,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.977424915930974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0.157702415033935,0.234282829985426,0.300946099727719,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0.0890320356467374,0.495854746082934,0.192190067365106,0,0.10115778085555,0,0.62962469366128,0,0.616067160352178,0,0,0.18532421910392,0.572499546967965,0,0,0,0,0,0.636406495851874,0,0,0,0,0.606547444719948,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0.563391205064483,0,0.0982490410131212,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0,0.123084805461069,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.247127877893006,0.208843899010911,0,0,0,0,0,0,0,0,0,0.063186579628488,15.1826653608637,0,0,0,0,0,0,0,0,0,0.261177619741208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0,0,0,0,0,1.26184898228651,0,0,0.521988583930423,0,0,0.489473409012935,0.179088841081487,0,0,0,0.192914038270915,0.168942440653073,0.256241518587947,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0.345701962667338,0,0,0,0,0.111231401892069,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0.179650404213174,0,0,0,0,0,0 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| ||
|short_description=p27@SHMT2 | |||
}} | }} |
Latest revision as of 13:35, 19 September 2015
Short description: | p27@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_27_at_SHMT2_5end |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | -27bp_to_NM_001166358, NR_029416_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | B7Z9F1P34897Q5BJF5Q5HYG8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of lymphatic vessel | 6.48e-18 | 2 |
classical monocyte | 8.52e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.52e-08 | 42 |
defensive cell | 6.65e-07 | 48 |
phagocyte | 6.65e-07 | 48 |