FFCP PHASE1:Hg19::chr12:6554098..6554131,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:6554098..6554131,+ to FFCP PHASE1:Hg19::chr12:6554098..6554131,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=939 | |EntrezGene=939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11922 | |HGNC=11922 | ||
|TSSclassifier=strong | |||
|UniProt=P26842 | |UniProt=P26842 | ||
|association_with_transcript=47bp_to_NM_001242,uc001qod.2_5end | |||
|cluster_id=chr12:6554098..6554131,+ | |||
|coexpression_cluster_id=C2232 | |||
|description=CAGE_peak_1_at_CD27_5end | |||
|id=chr12:6554098..6554131,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.58e-37!53;CL:0000051!1.58e-37!53;CL:0000838!1.40e-36!52;CL:0000738!1.36e-28!140;CL:0002087!4.40e-26!119;CL:0002031!9.66e-21!124;CL:0000037!5.96e-20!172;CL:0000566!5.96e-20!172;CL:0000945!1.99e-19!24;CL:0000826!1.99e-19!24;CL:0000791!3.57e-18!18;CL:0000789!3.57e-18!18;CL:0002420!3.57e-18!18;CL:0002419!3.57e-18!18;CL:0000790!3.57e-18!18;CL:0000988!1.60e-17!182;CL:0002032!4.95e-17!165;CL:0000837!4.95e-17!165;CL:0000084!1.44e-15!25;CL:0000827!1.44e-15!25;CL:0000236!7.35e-14!14;CL:0000625!5.14e-13!11;CL:0000624!3.14e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.12e-29;53!CL:0000945;3.46e-27;24!CL:0000791;5.13e-25;18!CL:0000789;5.13e-25;18!CL:0002419;5.13e-25;18!CL:0000084;2.62e-20;25!CL:0000625;1.45e-17;11!CL:0000236;2.33e-17;13!CL:0000624;7.06e-11;6!CL:0002087;3.00e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.55e-51,53;CL:0000051,1.55e-51,53;CL:0000838,3.29e-50,52;CL:0000945,3.57e-27,24;CL:0000826,3.57e-27,24;CL:0002087,2.00e-25,115;CL:0000738,5.00e-25,136;CL:0000791,5.11e-25,18;CL:0000789,5.11e-25,18;CL:0002420,5.11e-25,18;CL:0002419,5.11e-25,18;CL:0000790,5.11e-25,18;CL:0000084,2.98e-20,25;CL:0000827,2.98e-20,25;CL:0002031,3.65e-19,120;CL:0000236,5.66e-19,14;CL:0000625,1.45e-17,11;CL:0000037,4.59e-17,168;CL:0000988,2.24e-15,177;CL:0002032,4.69e-15,161;CL:0000837,4.69e-15,161;CL:0000624,7.01e-11,6 | |||
|ontology_enrichment_development_v019=CL:0000051;1.12e-29;53!CL:0000790;5.13e-25;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.37e-18!115;UBERON:0000178!1.36e-09!15;UBERON:0000179!1.36e-09!15;UBERON:0000463!1.36e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.61e-13;15!UBERON:0000179;2.61e-13;15!UBERON:0000463;2.61e-13;15!UBERON:0002390;1.11e-09;32!UBERON:0004177;1.78e-08;5!UBERON:0005057;1.78e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.55e-13,15;UBERON:0000179,2.55e-13,15;UBERON:0000463,2.55e-13,15;UBERON:0007023,2.77e-09,114;UBERON:0004177,1.63e-08,7;UBERON:0005057,1.63e-08,7 | |||
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| ||
|short_description=p1@CD27 | |||
}} | }} |
Latest revision as of 22:09, 19 September 2015
Short description: | p1@CD27 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD27_5end |
Coexpression cluster: | C2232_lymphangiectasia_CD4_diffuse_Burkitt_lymphoma_plasma_tonsil |
Association with transcript: | 47bp_to_NM_001242, uc001qod.2_5end |
EntrezGene: | CD27 |
HGNC: | 11922 |
UniProt: | P26842 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.55e-51 | 53 |
common lymphoid progenitor | 1.55e-51 | 53 |
lymphoid lineage restricted progenitor cell | 3.29e-50 | 52 |
lymphocyte of B lineage | 3.57e-27 | 24 |
pro-B cell | 3.57e-27 | 24 |
nongranular leukocyte | 2.00e-25 | 115 |
leukocyte | 5.00e-25 | 136 |
mature alpha-beta T cell | 5.11e-25 | 18 |
alpha-beta T cell | 5.11e-25 | 18 |
immature T cell | 5.11e-25 | 18 |
mature T cell | 5.11e-25 | 18 |
immature alpha-beta T cell | 5.11e-25 | 18 |
T cell | 2.98e-20 | 25 |
pro-T cell | 2.98e-20 | 25 |
hematopoietic lineage restricted progenitor cell | 3.65e-19 | 120 |
B cell | 5.66e-19 | 14 |
CD8-positive, alpha-beta T cell | 1.45e-17 | 11 |
hematopoietic stem cell | 4.59e-17 | 168 |
hematopoietic cell | 2.24e-15 | 177 |
hematopoietic oligopotent progenitor cell | 4.69e-15 | 161 |
hematopoietic multipotent progenitor cell | 4.69e-15 | 161 |
CD4-positive, alpha-beta T cell | 7.01e-11 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 2.55e-13 | 15 |
haemolymphatic fluid | 2.55e-13 | 15 |
organism substance | 2.55e-13 | 15 |
adult organism | 2.77e-09 | 114 |
hemopoietic organ | 1.63e-08 | 7 |
immune organ | 1.63e-08 | 7 |