FFCP PHASE1:Hg19::chr13:48878040..48878051,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:48878040..48878051,+ to FFCP PHASE1:Hg19::chr13:48878040..48878051,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5925 | |EntrezGene=5925 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9884 | |HGNC=9884 | ||
|TSSclassifier=strong | |||
|UniProt=P06400,Q92728 | |UniProt=P06400,Q92728 | ||
|association_with_transcript=129bp_to_ENST00000267163,ENST00000467505_5end | |||
|cluster_id=chr13:48878040..48878051,+ | |||
|description=CAGE_peak_6_at_RB1_5end | |||
|id=chr13:48878040..48878051,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.45e-48!172;CL:0000566!1.45e-48!172;CL:0000738!6.22e-48!140;CL:0000988!1.04e-45!182;CL:0002032!1.31e-45!165;CL:0000837!1.31e-45!165;CL:0002031!5.89e-42!124;CL:0002087!6.85e-42!119;CL:0000763!9.95e-29!112;CL:0000049!9.95e-29!112;CL:0000766!2.98e-28!76;CL:0000557!6.50e-27!71;CL:0000839!7.79e-27!70;CL:0000860!1.98e-26!45;CL:0002057!2.47e-26!42;CL:0002194!6.22e-25!63;CL:0000576!6.22e-25!63;CL:0000040!6.22e-25!63;CL:0000559!6.22e-25!63;CL:0002009!1.72e-24!65;CL:0000134!4.54e-16!358;CL:0000542!7.27e-15!53;CL:0000051!7.27e-15!53;CL:0000838!9.11e-15!52;CL:0002320!1.51e-14!365;CL:0000219!8.27e-14!390;CL:0000945!6.52e-13!24;CL:0000826!6.52e-13!24;CL:0000236!1.17e-10!14;CL:0000723!4.78e-07!436;CL:0000048!5.61e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.98e-46;33!CL:0002057;3.98e-46;33!CL:0000473;1.87e-40;39!CL:0000234;1.87e-40;39!CL:0000576;3.78e-34;48!CL:0000766;1.77e-28;69!CL:0000236;1.50e-24;13!CL:0002087;4.84e-19;104!CL:0000738;3.79e-18;136!CL:0000945;2.98e-17;24!CL:0000763;5.32e-16;100!CL:0000988;6.68e-12;177!CL:0000542;1.35e-11;53!CL:0000219;3.15e-08;193!CL:0002393;3.57e-07;6!CL:0002397;3.57e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.58e-74,136;CL:0000037,1.33e-70,168;CL:0002032,3.48e-67,161;CL:0000837,3.48e-67,161;CL:0002087,3.57e-66,115;CL:0000988,1.05e-65,177;CL:0002031,1.46e-64,120;CL:0000473,1.34e-63,48;CL:0000234,1.34e-63,48;CL:0000860,1.03e-61,42;CL:0002057,1.03e-61,42;CL:0000766,3.23e-56,72;CL:0000557,9.72e-54,67;CL:0002009,3.97e-50,61;CL:0002194,4.55e-50,59;CL:0000576,4.55e-50,59;CL:0000040,4.55e-50,59;CL:0000559,4.55e-50,59;CL:0000839,5.58e-50,66;CL:0000763,8.76e-50,108;CL:0000049,8.76e-50,108;CL:0000236,1.31e-22,14;CL:0000134,8.99e-22,354;CL:0002320,7.33e-21,361;CL:0000219,2.51e-18,386;CL:0000945,2.15e-17,24;CL:0000826,2.15e-17,24;CL:0000838,2.87e-15,52;CL:0000542,7.74e-15,53;CL:0000051,7.74e-15,53;CL:0000034,1.59e-14,441;CL:0000048,1.96e-14,427;CL:0000723,6.80e-14,433;CL:0002393,2.19e-11,9;CL:0002397,2.19e-11,9 | |||
|ontology_enrichment_development_v019=CL:0002057;9.85e-43;42!CL:0000049;7.48e-15;108!CL:0000051;1.35e-11;53 | |||
|ontology_enrichment_disease=DOID:2531!8.66e-07!51;DOID:0060083!8.66e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.43e-29!102;UBERON:0003061!7.43e-29!102;UBERON:0002193!3.50e-27!112;UBERON:0002371!1.94e-24!80;UBERON:0001474!4.32e-24!86;UBERON:0004765!1.86e-21!101;UBERON:0001434!1.86e-21!101;UBERON:0002405!2.39e-21!115;UBERON:0002384!5.74e-14!375;UBERON:0003081!7.09e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.32e-47,76;UBERON:0002390,6.98e-45,98;UBERON:0003061,6.98e-45,98;UBERON:0001474,5.82e-43,82;UBERON:0002405,3.23e-41,93;UBERON:0002193,9.01e-41,108;UBERON:0004765,9.73e-38,90;UBERON:0001434,2.14e-32,100;UBERON:0002384,2.25e-20,371;UBERON:0003081,3.16e-15,203;UBERON:0002204,3.36e-14,167 | |||
|phase1_expression=0,0.428201047781966,0.281908808191942,0,0.893922188854576,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0,0.916960868975415,0.821005894499457,0.787107813136792,1.18009283054671,0,0.77408061658038,0,0,0,0.232401601740905,1.13735385989937,0.293600439334847,2.21598163412751,1.80490002723128,2.38711957787437,1.11957737119962,0.971680998056939,0.77272670290256,2.61716829803216,1.13362783106643,2.66842467306598,2.55671940596253,1.23350366406548,1.85823822537062,4.31538588483226,4.35473201099471,3.07426898855161,1.03423704220986,1.29096936716765,4.06279459783025,1.69418105588344,3.27487380069415,1.57306439111559,3.06083892370903,2.24650318953266,3.83602275479425,4.28806690242731,4.78712778291916,5.11469700639233,1.16083695451434,1.70215567407342,2.4912889959823,1.50749199154046,3.12889751052121,1.52032191293582,3.02699751316684,1.84138817993782,1.58231193720442,1.26753171787165,2.12604299965044,0.419317291016752,2.3589012540764,2.55300717830561,1.44653028027372,1.71007646244749,2.18808344918999,1.46131323011707,10.5597746676794,4.91524750135918,6.22656477704488,5.12076267079809,4.40435585739614,5.74752439954483,5.2883589822789,4.77026877267682,4.55370375287559,2.34894875748376,6.11637165000366,2.64342657158052,0,2.37045676297569,1.180258620683,0.393010762749165,0.616804496998528,0,0.651844533267181,0,0,0.557052284425868,0.589211814949674,0.886135578334485,0.812411591295047,0.384273959177026,0.130059347559878,0.493313713811028,1.10540007114339,0.869409257205157,1.18629250529648,1.07016331235885,0,0.679856056185397,1.53288197440768,1.03088233644789,0.253019692019503,0,0,1.90090408889675,0,0,0,0.947109008176067,0,1.20964045934839,1.06976078313403,0.579297615531196,0,0,0.12786256184353,0,0,0.144846518960824,0.795285947051099,0.973269740605272,0.283604451492204,0,0.351339142772504,0.458426764241994,0,0,0,0,0.26591592103773,0.476981248610684,0.571994910780128,0.371457501329565,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.208994966536811,1.55050055501597,0.35576626268671,0,0.402829317109147,0,0,0,0.81014194788176,0.357198913136319,0.44905874525234,0.563057402416611,0,0,0,2.63560834872127,3.87780264148325,0,0,0.759783069987479,0.264818361626438,0,0,0,0,0,0,0.134710672069688,0.326923806226917,0,0,0.234321431833797,0,0,0,0.23486899728753,0.161872944368132,0.280901613404497,0,0.368502951935304,0,2.37600571456411,0.494533858557114,0,0,0,0.250237039743928,0.277064115484183,0,0.30648779579902,0.600952235626387,0.113432183160021,0.179389635688862,0,0,0.300091096084402,0.206105058476878,0,0,0.337552664482532,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0.339121184620975,0,0.272746120590835,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.55146986366197,0.435758888184812,0.237270619111097,0.269662616320329,0,0,0.738155454624648,0,0.4115740113314,0,0,0,0.590789906681404,3.5317047953172,0,0,0,0,0.201057944823262,0.277765335475589,0,0,0,0,0.234817388471643,0,0,0.951270761172991,0.790204397959275,0,2.46217006087397,1.40402559083543,0.594524649154913,0.93733833986777,0.335964256397719,0.283550194484773,0,0.290633938513962,0,1.97065295158377,0.176096868026452,1.86595303986695,1.15295962733569,0.75745460055828,1.14296209725904,0,0,0,0.308482478109971,0,0.285826432630578,0.112131084345361,0,0.1466765716419,0.129271715757778,0,0,0,0,0.257207374262142,1.41849132023278,0,0.285955987316295,0,0,0,0.710783897485092,0,0.602878754119172,0,0.299918973546171,1.2162378064119,1.00451418286425,0,0.239624855491583,0,0,0.868687840005475,0.61642896765115,0.537182889719687,0.784596007954691,0.985153801009636,0.431255149719035,1.15508732651774,0.254094624222463,0,0,0,0,3.74503511973591,0,1.24324654030811,0,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0.117141414992713,0,0,0,0,0,0.347534457872331,0,0,1.24060815673732,1.50999940573032,1.17400313583789,0,0,0,0,0,0,0.128139149255701,0,0,0,0.308419387605311,0.355123450626254,0.164254312027618,0,0.232420756919918,0,0.40101294060657,0.276242966807689,0.34444334449382,0.182091168006717,0.131124414959424,0.451199612907412,0.15403067420883,0,1.46139224653261,0.105551628892876,0,0.340187410553031,0.647747748306418,0,0,0,0.254876273045038,0,0.223874754722178,0.657779629937804,0.261435451024901,0,0,0,0,0.366277859273374,0.330037999682352,0,0,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0.214840489736547,0,0.0852266274161009,0,0.165284915360978,0.192190067365106,0.510450849978337,0,0,0.31481234683064,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0.0962221127255121,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,1.13929437434833,1.19115887728894,0.822724546172388,0.648473311192717,0.540031437238115,0,0.106824071127473,0,0.245040215981032,0.371606350251437,3.89526875036401,1.63626239701352,3.50737800003409,0.59873811429845,1.1490322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| ||
|short_description=p6@RB1 | |||
}} | }} |
Latest revision as of 15:16, 17 September 2015
Short description: | p6@RB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 129bp_to_ENST00000267163, ENST00000467505_5end |
EntrezGene: | RB1 |
HGNC: | 9884 |
UniProt: | P06400Q92728 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.32e-47 | 76 |
hematopoietic system | 6.98e-45 | 98 |
blood island | 6.98e-45 | 98 |
bone element | 5.82e-43 | 82 |
immune system | 3.23e-41 | 93 |
hemolymphoid system | 9.01e-41 | 108 |
skeletal element | 9.73e-38 | 90 |
skeletal system | 2.14e-32 | 100 |
connective tissue | 2.25e-20 | 371 |
lateral plate mesoderm | 3.16e-15 | 203 |
musculoskeletal system | 3.36e-14 | 167 |