FFCP PHASE1:Hg19::chr17:39661856..39661871,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:39661856..39661871,- to FFCP PHASE1:Hg19::chr17:39661856..39661871,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3860 | |EntrezGene=3860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6415 | |HGNC=6415 | ||
|TSSclassifier=strong | |||
|UniProt=P13646,A1A4E9 | |UniProt=P13646,A1A4E9 | ||
|association_with_transcript=0bp_to_NM_002274,NM_153490,uc002hwu.1,uc002hwv.1,uc002hww.2,uc002hwx.1,uc010cxo.2,uc010wfr.1_5end | |||
|cluster_id=chr17:39661856..39661871,- | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_1_at_KRT13_5end | |||
|id=chr17:39661856..39661871,- | |||
|ontology_enrichment_celltype=CL:0002076!7.68e-22!43;CL:0000223!2.65e-15!59;CL:0002368!8.57e-12!13;CL:0002251!3.52e-10!21;CL:0000066!1.29e-08!254;CL:0002202!6.37e-08!9;CL:0002632!6.37e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.08e-17;42!CL:0002368;3.46e-14;13!CL:0002251;8.10e-14;20!CL:0002202;7.87e-09;9!CL:0002632;7.87e-09;9!CL:0000244;1.24e-07;4!CL:0000731;1.24e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,9.97e-23,42;CL:0000223,5.34e-17,58;CL:0002368,4.15e-14,13;CL:0002251,7.54e-14,20;CL:0002202,9.06e-09,9;CL:0002632,9.06e-09,9;CL:0000244,1.31e-07,4;CL:0000731,1.31e-07,4;CL:0000066,4.12e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000223;3.87e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;1.03e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.03e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.29e-21!169;UBERON:0000925!4.29e-21!169;UBERON:0006595!4.29e-21!169;UBERON:0001004!1.27e-15!72;UBERON:0000161!1.32e-14!35;UBERON:0001007!1.79e-14!155;UBERON:0001555!1.79e-14!155;UBERON:0007026!1.79e-14!155;UBERON:0000077!1.34e-13!130;UBERON:0004921!7.50e-12!129;UBERON:0004185!7.50e-12!129;UBERON:0000166!4.49e-11!21;UBERON:0000065!7.04e-10!53;UBERON:0004175!1.73e-09!25;UBERON:0001041!1.53e-08!98;UBERON:0000468!1.68e-08!659;UBERON:0007023!2.73e-08!115;UBERON:0000165!2.82e-08!28;UBERON:0000930!2.82e-08!28;UBERON:0000062!6.27e-08!511;UBERON:0005795!1.37e-07!22;UBERON:0000922!1.42e-07!612;UBERON:0005156!1.51e-07!59;UBERON:0000990!1.51e-07!59;UBERON:0003975!1.56e-07!22;UBERON:0007196!1.57e-07!14;UBERON:0001558!1.57e-07!14;UBERON:0001044!2.80e-07!6;UBERON:0003293!2.80e-07!6;UBERON:0003294!2.80e-07!6;UBERON:0010047!2.80e-07!6;UBERON:0000167!2.80e-07!6;UBERON:0002050!3.76e-07!605;UBERON:0005423!3.76e-07!605;UBERON:0003408!4.03e-07!10;UBERON:0005911!5.27e-07!82;UBERON:0005178!8.23e-07!34;UBERON:0002224!8.23e-07!34;UBERON:0000365!9.13e-07!5;UBERON:0000923!9.27e-07!604;UBERON:0005291!9.27e-07!604;UBERON:0006598!9.27e-07!604;UBERON:0002532!9.27e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;4.19e-11;19!UBERON:0000166;4.19e-11;19!UBERON:0000165;4.65e-11;28!UBERON:0001041;1.64e-10;14!UBERON:0005178;5.65e-09;34!UBERON:0002224;5.65e-09;34!UBERON:0000365;5.91e-09;5!UBERON:0007196;2.42e-08;15!UBERON:0001558;2.42e-08;15!UBERON:0000974;2.42e-08;6!UBERON:0000486;3.89e-08;12!UBERON:0005181;9.49e-08;35!UBERON:0005910;2.25e-07;6!UBERON:0001044;4.08e-07;6!UBERON:0003293;4.08e-07;6!UBERON:0003294;4.08e-07;6!UBERON:0010047;4.08e-07;6!UBERON:0003408;4.08e-07;6!UBERON:0000167;4.08e-07;6!UBERON:0001555;5.19e-07;54!UBERON:0000344;5.73e-07;20!UBERON:0001004;6.20e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.33e-22,160;UBERON:0000925,1.33e-22,160;UBERON:0006595,1.33e-22,160;UBERON:0001004,2.00e-18,74;UBERON:0001007,2.56e-14,145;UBERON:0001555,2.56e-14,145;UBERON:0007026,2.56e-14,145;UBERON:0000161,1.01e-13,36;UBERON:0000166,2.77e-13,22;UBERON:0004921,1.41e-11,118;UBERON:0000065,1.87e-11,54;UBERON:0000165,1.45e-10,29;UBERON:0000930,1.45e-10,29;UBERON:0001041,4.51e-10,87;UBERON:0005178,1.26e-09,34;UBERON:0002224,1.26e-09,34;UBERON:0005181,3.13e-09,35;UBERON:0000153,3.43e-09,62;UBERON:0007811,3.43e-09,62;UBERON:0000365,6.28e-09,5;UBERON:0000974,9.40e-09,10;UBERON:0004175,1.68e-08,25;UBERON:0007196,2.68e-08,15;UBERON:0001558,2.68e-08,15;UBERON:0001444,3.19e-08,49;UBERON:0001008,5.79e-08,48;UBERON:0003408,8.57e-08,10;UBERON:0005910,2.36e-07,6;UBERON:0001044,3.73e-07,6;UBERON:0003293,3.73e-07,6;UBERON:0003294,3.73e-07,6;UBERON:0010047,3.73e-07,6;UBERON:0000167,3.73e-07,6;UBERON:0006554,3.88e-07,47;UBERON:0000344,5.75e-07,20;UBERON:0007023,7.68e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,116.969353774718,1624.48111903981,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,111.24996816195,9.33738348212575,7.02532619316897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0.612167784741805,0,0,0,0,0,0.290209238628584,0,0,0,0,0,312.386143358818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,54.0288686428065,18.9433549912122,51.1682531042513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337834441449967,0,0,0,0,0,38.8123706406856,0,0,0,0,0,2.24271040056923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,22.0317372606158,4.63668405004419,7.4569194801141,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.330881918197182,0,0,0.539325232640658,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,12.4017822511747,26.9764207818287,0.201057944823262,4.35165692245089,0,0,0,0,0,0,0,0,1.58040879591855,7.72637545885385,0,0,0,0,0.671928512795438,0.708875486211932,0,0,0,0.985326475791887,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0032098577266,11.6504807657348,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.601519410909855,94.5671756371655,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,5.26223703950243,8.10449898177192,0,0.328014645699706,0,0.721287081534056,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0.255679882248303,0,3.47098322258054,17.2971060628596,22.3322246865522,11.1273558941105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,5.38843831262868,260.747585183421,1.08890984861323,0.659006605437454,24.1083008695889,55.5955869703164,226.149378303705,2.06751060186264,0,0,0,0,0,0,0,0,0,0,634.16407895891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,48.7038748864888,0,1.53580351049616,0,0,0,0,0,14.1466071658259,0,0,0.102268682502155,0,0,0.0898683511473268,0.358042349351218,0,245.523436630328,0,0,0,0,0,0.7812832832557,0,0,28.7897424162314,0.254253650292766,24.5843189038654,0,0,0,0,0,0,0,0,0,0,8089.36564304456,7125.97868874413,0,0,0,0,3.19001159731919,0,0,0,0,0,0,0,0,0,4.29128763247022,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0,0,51.6554593980717,3.64170569301139,1.18375320854817,1.20990716048664,0,0.063186579628488,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0.347119476670262,574.431433643082,21.3295056121986,1.22308667769421,0,0,0,0.0821154570532092,27201.3455863091,0,302.814192645913,0,0,0.443175571691151,17.4040730633975,0,3.84215390530835,2.99714414373195,0,0,0,0,0,45.0175606118079,3.12579673969312,2.40586546518366,0,0,0,0,0,0,0,0,0.229160424011684,0,6.58940701646671,0,0,10.7493555978762,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0.182248669974074,277.404486644593,6.77729082773104,5.6650955185798,0,0,0,0,0,2.28841683889275,0.542999601753713,0,0,0,0,0,0.113312091520126,0,5.30027555648885,0,0,0,551.870162473954,3.73755943986931,8.01741956008296,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,2.62458856720424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0.926404341482917,0.438568099157414,0,0,0,0,0,0,0,0,0,0,0,0,4.22624246717254,0,0,0,0,0,3.776746708425,1.24415452006595,0,0.107824811396682,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0.41023272848151,0,0,0,1.42769420259154,50.4479273095272,369.717112971818,37.4194340984225,0,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0,0,0.546974809018219,1.64477330057155,357.768259618681,0,22.3584248369292,0,0,0.606965604236632,0.455324382702595,1.1531308121143,0,0,0,1.51277379194553,0,0,68.4459769656482,0,1.12108865325516,1.82631744101899,0,0,3.57382720883282,0,0,0,0,9.94637587982577,9.73095319435515,26.2678671489355,114.870704805014,0,0,1.27016115057279,3.43660302816075,0,0,0,1.3741032706134,9.99726984854609,12.30114790657,0,0,25.2569716390753,0,0,0,0,0,0,0.154348316215889,0,0,43.3912529504413,0,0,0,9.7210817344182,0,0,0.515663103788617,0,69.9931439334178,0,0,11.6853822119443,0.917458566809082,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0,10416.266781881,115.699313691378,12.4010706885132,29.6717134334201,0,0.572824424503484,0.808468755832877,13165.9848955729,6011.67016686405,10393.6341171051,2183.72598759082,466.057159520965,7.24489090637673,0,0,0,204.137619891005,409.019872235871,8281.15102108191,195.732491610541,3.01910690386539,0 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| ||
|short_description=p1@KRT13 | |||
}} | }} |
Latest revision as of 05:39, 20 September 2015
Short description: | p1@KRT13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KRT13_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | 0bp_to_NM_002274, NM_153490, uc002hwu.1, uc002hwv.1, uc002hww.2, uc002hwx.1, uc010cxo.2, uc010wfr.1_5end |
EntrezGene: | KRT13 |
HGNC: | 6415 |
UniProt: | P13646A1A4E9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 9.97e-23 | 42 |
endodermal cell | 5.34e-17 | 58 |
respiratory epithelial cell | 4.15e-14 | 13 |
epithelial cell of alimentary canal | 7.54e-14 | 20 |
epithelial cell of tracheobronchial tree | 9.06e-09 | 9 |
epithelial cell of lower respiratory tract | 9.06e-09 | 9 |
transitional epithelial cell | 1.31e-07 | 4 |
urothelial cell | 1.31e-07 | 4 |
epithelial cell | 4.12e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.33e-22 | 160 |
endoderm | 1.33e-22 | 160 |
presumptive endoderm | 1.33e-22 | 160 |
respiratory system | 2.00e-18 | 74 |
digestive system | 2.56e-14 | 145 |
digestive tract | 2.56e-14 | 145 |
primitive gut | 2.56e-14 | 145 |
orifice | 1.01e-13 | 36 |
oral opening | 2.77e-13 | 22 |
subdivision of digestive tract | 1.41e-11 | 118 |
respiratory tract | 1.87e-11 | 54 |
mouth | 1.45e-10 | 29 |
stomodeum | 1.45e-10 | 29 |
foregut | 4.51e-10 | 87 |
thoracic cavity element | 1.26e-09 | 34 |
thoracic cavity | 1.26e-09 | 34 |
thoracic segment organ | 3.13e-09 | 35 |
anterior region of body | 3.43e-09 | 62 |
craniocervical region | 3.43e-09 | 62 |
urothelium | 6.28e-09 | 5 |
neck | 9.40e-09 | 10 |
internal genitalia | 1.68e-08 | 25 |
tracheobronchial tree | 2.68e-08 | 15 |
lower respiratory tract | 2.68e-08 | 15 |
subdivision of head | 3.19e-08 | 49 |
renal system | 5.79e-08 | 48 |
gland of gut | 8.57e-08 | 10 |
transitional epithelium | 2.36e-07 | 6 |
saliva-secreting gland | 3.73e-07 | 6 |
gland of oral region | 3.73e-07 | 6 |
gland of foregut | 3.73e-07 | 6 |
oral gland | 3.73e-07 | 6 |
oral cavity | 3.73e-07 | 6 |
urinary system structure | 3.88e-07 | 47 |
mucosa | 5.75e-07 | 20 |
adult organism | 7.68e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.03e-07 | 14 |