FFCP PHASE1:Hg19::chr17:40913145..40913205,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:40913145..40913205,+ to FFCP PHASE1:Hg19::chr17:40913145..40913205,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10266 | |EntrezGene=10266 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9844 | |HGNC=9844 | ||
|TSSclassifier=strong | |||
|UniProt=O60895 | |UniProt=O60895 | ||
|association_with_transcript=-6bp_to_ENST00000253796,NM_005854,uc002ibg.2,uc002ibh.2,uc010cyt.2_5end | |||
|cluster_id=chr17:40913145..40913205,+ | |||
|coexpression_cluster_id=C1435 | |||
|description=CAGE_peak_2_at_RAMP2_5end | |||
|id=chr17:40913145..40913205,+ | |||
|ontology_enrichment_celltype=CL:0002139!6.98e-08!24;CL:0000213!7.06e-08!57;CL:0000215!7.06e-08!57;CL:0000115!7.55e-08!35;CL:0002078!1.31e-07!44;CL:0000325!9.68e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.89e-09;24!CL:0000115;1.18e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,5.27e-09,36;CL:0002139,9.46e-09,24;CL:0000213,1.22e-08,58;CL:0000215,1.22e-08,58;CL:0002078,1.41e-08,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.88e-20!115;UBERON:0000025!2.80e-17!194;UBERON:0004111!7.78e-17!241;UBERON:0000119!8.41e-17!312;UBERON:0000483!8.91e-17!309;UBERON:0000073!2.26e-14!94;UBERON:0001016!2.26e-14!94;UBERON:0000477!2.88e-14!286;UBERON:0005743!3.66e-12!86;UBERON:0002346!7.63e-12!90;UBERON:0001017!1.82e-11!82;UBERON:0000468!5.10e-11!659;UBERON:0003075!2.47e-10!86;UBERON:0007284!2.47e-10!86;UBERON:0003914!1.68e-09!118;UBERON:0001049!3.46e-09!57;UBERON:0005068!3.46e-09!57;UBERON:0006241!3.46e-09!57;UBERON:0007135!3.46e-09!57;UBERON:0000475!4.02e-09!365;UBERON:0000924!2.53e-08!173;UBERON:0006601!2.53e-08!173;UBERON:0000955!3.20e-08!69;UBERON:0006238!3.20e-08!69;UBERON:0000481!7.83e-08!347;UBERON:0000922!1.39e-07!612;UBERON:0000064!1.97e-07!219;UBERON:0003056!2.55e-07!61;UBERON:0004121!2.86e-07!169;UBERON:0002616!2.91e-07!59;UBERON:0003080!3.62e-07!42;UBERON:0003103!5.07e-07!69;UBERON:0000467!5.28e-07!625;UBERON:0000480!7.92e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.46e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.48e-23,114;UBERON:0000025,5.62e-16,192;UBERON:0004111,8.82e-15,240;UBERON:0001016,1.44e-13,89;UBERON:0001017,1.08e-11,81;UBERON:0000119,1.58e-11,309;UBERON:0000483,1.71e-11,306;UBERON:0011216,3.48e-10,223;UBERON:0002346,3.72e-10,86;UBERON:0003914,6.56e-09,117;UBERON:0001049,1.09e-08,56;UBERON:0005068,1.09e-08,56;UBERON:0006241,1.09e-08,56;UBERON:0007135,1.09e-08,56;UBERON:0003075,1.23e-08,82;UBERON:0007284,1.23e-08,82;UBERON:0000955,3.51e-08,68;UBERON:0006238,3.51e-08,68;UBERON:0000073,9.69e-08,53;UBERON:0002616,9.69e-08,53;UBERON:0003103,2.51e-07,68;UBERON:0004121,5.05e-07,171;UBERON:0000924,5.05e-07,171;UBERON:0006601,5.05e-07,171;UBERON:0002780,6.20e-07,41;UBERON:0001890,6.20e-07,41;UBERON:0003080,6.20e-07,41;UBERON:0006240,6.20e-07,41;UBERON:0002417,7.66e-07,60;UBERON:0000916,7.66e-07,60 | |||
|phase1_expression=11.6274162733156,4.92431204949261,12.5449419645414,2.00146596706261,22.3480547213644,0.872338524100369,5.06599756336621,13.2661173419635,53.5430537809669,1.72013755551056,2.09340350391728,0.218441372130172,0.791300934685361,0.990130823680373,0.994192127183747,2.6893005858071,6.62963980826375,3.65155045193687,5.36726078669558,1.72369481307503,0.204000691244253,0.940364164434263,1.43117993565528,0.821246550437305,1.25542639594803,0.0764134057479513,0.164201178899891,0,0,0,1.23852898652861,0,0.6024118375565,0,0,0,0.587200878669695,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,4.34732710268003,0,0.50133791063589,0.144846518960824,2.3858578411533,0.973269740605272,0.945348171640679,0.665188192387692,1.49319135678314,9.62696204908188,0.728590576585084,0.370784442784429,0,0,0.132957960518865,0.476981248610684,0.571994910780128,1.48583000531826,4.37277296206751,4.30117297553062,2.77712401286075,2.82653970962005,5.45349267072878,5.50236083880135,3.76190939766259,5.42675194255591,3.20189636418039,8.36801531911676,15.7103433672567,3.80136052859256,26.1146401576541,4.04429388380456,6.48113558305408,9.10857228497614,7.85852804191594,10.2476447239823,1.53316637465883,0,4.03043836646896,0,0,0,0.496971951695318,1.8994576749687,0,0.286836620748814,1.41867352879343,0.560677600142307,5.33744978648525,3.94668077467456,2.48968828319813,1.88594940897563,4.08654757783647,1.36221684880438,0,1.40592859100278,0.312160076830321,0,0.298897361103602,0.822041490506354,0.485618833104395,0.702254033511242,0.408308342509787,0.737005903870608,1.85986406116378,0,0,1.82032272387605,0,0.336672227908132,0.750711119231785,0.277064115484183,0,0,0,3.40296549480063,0.89694817844431,1.70845911054854,2.11931901159562,1.50045548042201,1.33968288009971,0,0.744467425326359,0.675105328965065,1.46155507741798,0,0.736399189138395,2.58633690910099,1.77504796258307,1.61203357164224,2.20428770003634,0.193260853163297,0.272746120590835,0.286804595389004,5.73276418809098,5.69878003782387,7.55260628651869,5.70135802584537,10.5974757367764,4.74470566798579,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,15.5012645471176,14.0241773803446,19.7555525439072,24.9914809355421,1.26755034821831,0,2.95394953340702,0,9.22413289073352,0.686271241194102,0,0,0.301586917234893,0.0925884451585296,1.62904152655162,0,1.44331342025273,6.37617227362923,0.117408694235822,25.1197619104268,20.8343480659475,21.308465050275,0,0,0,0.234004265139238,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0.12624243342638,3.87337155182231,3.05590740446622,5.86087236050235,10.2643467613623,2.98199728839638,3.90445975197093,2.28661146104463,1.12131084345361,1.30788020649984,1.0267360014933,0.517086863031111,135.909449423715,5.917119267892,1.32969058292435,1.04007436911366,1.02882949704857,1.41849132023278,0.266422179016099,2.57360388584666,2.17048642156577,0,4.56030658011229,2.84313558994037,0.791951872933429,4.22015127883421,3.48613383440118,16.4955435450394,0,0,0,0.239624855491583,0,0,0.144781306667579,0.410952645100767,0.537182889719687,0,0,0,0,1.77866236955724,3.90419561572865,10.05275456611,6.03058555203656,5.74144876487847,0,0,0,3.43536176813592,5.00170521059677,1.62759014219841,1.03985430765404,0.713715955188647,0.946214490203608,0.35142424497814,1.80567659836631,0,12.4167685551006,0,1.65932251687533,0.60818530127658,5.286631251494,4.80400793335198,0,0,0,0.303127571446259,1.66435439510497,1.81434175997808,1.98486246255021,0.306923946576125,2.80660094433074,3.84417447767103,2.55853624533352,2.0911009748669,1.48418066444991,0.616838775210622,1.06537035187876,0.574890092096664,2.07701771673448,0.348631135379878,14.382274501403,0,0,0.34444334449382,0.728364672026868,0.917870904715969,3.15839729035188,2.6185214615501,13.3339460760065,5.84556898613043,2.00548094896464,11.3733384070897,4.42243633718941,4.31831832204279,111.043621937008,4.33514300070165,7.5253466078228,1.27438136522519,2.49322802678617,1.56712328305525,0,0,3.84675187674584,1.64007322849853,1.62689197332152,3.40035338437484,1.00726411300178,2.22775649785588,0,1.30012049207304,0,2.80345083047154,0.616194468458578,2.76306614507033,1.37836572484531,2.14840489736547,2.32026710262766,2.30111894023472,3.29418531892928,0.165284915360978,0,0.127612712494584,0.10115778085555,0.464845549297286,0.31481234683064,1.3940745403212,1.84820148105653,0.532306030317022,0,1.11194531462352,0.143124886741991,0,1.58189712359363,1.33441135746677,2.04718233049067,1.28381696410176,0.318203247925937,2.35484592059769,0.899362287916574,1.64722217841633,1.41374882814824,1.01091240786658,0,1.68503382495592,2.92580243453754,2.19342140668156,1.05650146756755,0.409499734223957,0.282810863907425,0,3.30819206127675,0.66343897524122,0.876901770507525,2.31510213706675,4.59126326432643,0,0.92947049429925,1.69017361519345,1.00387946542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|phase1_expression=11.6274162733156,4.92431204949261,12.5449419645414,2.00146596706261,22.3480547213644,0.872338524100369,5.06599756336621,13.2661173419635,53.5430537809669,1.72013755551056,2.09340350391728,0.218441372130172,0.791300934685361,0.990130823680373,0.994192127183747,2.6893005858071,6.62963980826375,3.65155045193687,5.36726078669558,1.72369481307503,0.204000691244253,0.940364164434263,1.43117993565528,0.821246550437305,1.25542639594803,0.0764134057479513,0.164201178899891,0,0,0,1.23852898652861,0,0.6024118375565,0,0,0,0.587200878669695,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,4.34732710268003,0,0.50133791063589,0.144846518960824,2.3858578411533,0.973269740605272,0.945348171640679,0.665188192387692,1.49319135678314,9.62696204908188,0.728590576585084,0.370784442784429,0,0,0.132957960518865,0.476981248610684,0.571994910780128,1.48583000531826,4.37277296206751,4.30117297553062,2.77712401286075,2.82653970962005,5.45349267072878,5.50236083880135,3.76190939766259,5.42675194255591,3.20189636418039,8.36801531911676,15.7103433672567,3.80136052859256,26.1146401576541,4.04429388380456,6.48113558305408,9.10857228497614,7.85852804191594,10.2476447239823,1.53316637465883,0,4.03043836646896,0,0,0,0.496971951695318,1.8994576749687,0,0.286836620748814,1.41867352879343,0.560677600142307,5.33744978648525,3.94668077467456,2.48968828319813,1.88594940897563,4.08654757783647,1.36221684880438,0,1.40592859100278,0.312160076830321,0,0.298897361103602,0.822041490506354,0.485618833104395,0.702254033511242,0.408308342509787,0.737005903870608,1.85986406116378,0,0,1.82032272387605,0,0.336672227908132,0.750711119231785,0.277064115484183,0,0,0,3.40296549480063,0.89694817844431,1.70845911054854,2.11931901159562,1.50045548042201,1.33968288009971,0,0.744467425326359,0.675105328965065,1.46155507741798,0,0.736399189138395,2.58633690910099,1.77504796258307,1.61203357164224,2.20428770003634,0.193260853163297,0.272746120590835,0.286804595389004,5.73276418809098,5.69878003782387,7.55260628651869,5.70135802584537,10.5974757367764,4.74470566798579,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,15.5012645471176,14.0241773803446,19.7555525439072,24.9914809355421,1.26755034821831,0,2.95394953340702,0,9.22413289073352,0.686271241194102,0,0,0.301586917234893,0.0925884451585296,1.62904152655162,0,1.44331342025273,6.37617227362923,0.117408694235822,25.1197619104268,20.8343480659475,21.308465050275,0,0,0,0.234004265139238,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0.12624243342638,3.87337155182231,3.05590740446622,5.86087236050235,10.2643467613623,2.98199728839638,3.90445975197093,2.28661146104463,1.12131084345361,1.30788020649984,1.0267360014933,0.517086863031111,135.909449423715,5.917119267892,1.32969058292435,1.04007436911366,1.02882949704857,1.41849132023278,0.266422179016099,2.57360388584666,2.17048642156577,0,4.56030658011229,2.84313558994037,0.791951872933429,4.22015127883421,3.48613383440118,16.4955435450394,0,0,0,0.239624855491583,0,0,0.144781306667579,0.410952645100767,0.537182889719687,0,0,0,0,1.77866236955724,3.90419561572865,10.05275456611,6.03058555203656,5.74144876487847,0,0,0,3.43536176813592,5.00170521059677,1.62759014219841,1.03985430765404,0.713715955188647,0.946214490203608,0.35142424497814,1.80567659836631,0,12.4167685551006,0,1.65932251687533,0.60818530127658,5.286631251494,4.80400793335198,0,0,0,0.303127571446259,1.66435439510497,1.81434175997808,1.98486246255021,0.306923946576125,2.80660094433074,3.84417447767103,2.55853624533352,2.0911009748669,1.48418066444991,0.616838775210622,1.06537035187876,0.574890092096664,2.07701771673448,0.348631135379878,14.382274501403,0,0,0.34444334449382,0.728364672026868,0.917870904715969,3.15839729035188,2.6185214615501,13.3339460760065,5.84556898613043,2.00548094896464,11.3733384070897,4.42243633718941,4.31831832204279,111.043621937008,4.33514300070165,7.5253466078228,1.27438136522519,2.49322802678617,1.56712328305525,0,0,3.84675187674584,1.64007322849853,1.62689197332152,3.40035338437484,1.00726411300178,2.22775649785588,0,1.30012049207304,0,2.80345083047154,0.616194468458578,2.76306614507033,1.37836572484531,2.14840489736547,2.32026710262766,2.30111894023472,3.29418531892928,0.165284915360978,0,0.127612712494584,0.10115778085555,0.464845549297286,0.31481234683064,1.3940745403212,1.84820148105653,0.532306030317022,0,1.11194531462352,0.143124886741991,0,1.58189712359363,1.33441135746677,2.04718233049067,1.28381696410176,0.318203247925937,2.35484592059769,0.899362287916574,1.64722217841633,1.41374882814824,1.01091240786658,0,1.68503382495592,2.92580243453754,2.19342140668156,1.05650146756755,0.409499734223957,0.282810863907425,0,3.30819206127675,0.66343897524122,0.876901770507525,2.31510213706675,4.59126326432643,0,0.92947049429925,1.69017361519345,1.00387946542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| ||
|short_description=p2@RAMP2 | |||
}} | }} |
Latest revision as of 15:55, 24 September 2015
Short description: | p2@RAMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAMP2_5end |
Coexpression cluster: | C1435_Renal_lung_retina_Mesenchymal_placenta_Hepatic_uterus |
Association with transcript: | -6bp_to_ENST00000253796, NM_005854, uc002ibg.2, uc002ibh.2, uc010cyt.2_5end |
EntrezGene: | RAMP2 |
HGNC: | 9844 |
UniProt: | O60895 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 5.27e-09 | 36 |
endothelial cell of vascular tree | 9.46e-09 | 24 |
lining cell | 1.22e-08 | 58 |
barrier cell | 1.22e-08 | 58 |
meso-epithelial cell | 1.41e-08 | 45 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.48e-23 | 114 |
tube | 5.62e-16 | 192 |
anatomical conduit | 8.82e-15 | 240 |
nervous system | 1.44e-13 | 89 |
central nervous system | 1.08e-11 | 81 |
cell layer | 1.58e-11 | 309 |
epithelium | 1.71e-11 | 306 |
organ system subdivision | 3.48e-10 | 223 |
neurectoderm | 3.72e-10 | 86 |
epithelial tube | 6.56e-09 | 117 |
neural tube | 1.09e-08 | 56 |
neural rod | 1.09e-08 | 56 |
future spinal cord | 1.09e-08 | 56 |
neural keel | 1.09e-08 | 56 |
neural plate | 1.23e-08 | 82 |
presumptive neural plate | 1.23e-08 | 82 |
brain | 3.51e-08 | 68 |
future brain | 3.51e-08 | 68 |
regional part of nervous system | 9.69e-08 | 53 |
regional part of brain | 9.69e-08 | 53 |
compound organ | 2.51e-07 | 68 |
ectoderm-derived structure | 5.05e-07 | 171 |
ectoderm | 5.05e-07 | 171 |
presumptive ectoderm | 5.05e-07 | 171 |
regional part of forebrain | 6.20e-07 | 41 |
forebrain | 6.20e-07 | 41 |
anterior neural tube | 6.20e-07 | 41 |
future forebrain | 6.20e-07 | 41 |
abdominal segment of trunk | 7.66e-07 | 60 |
abdomen | 7.66e-07 | 60 |