FFCP PHASE1:Hg19::chr18:26744101..26744119,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:26744101..26744119,- to FFCP PHASE1:Hg19::chr18:26744101..26744119,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr18:26744101..26744119,- | |||
|description=CAGE_peak_at_chr18:26744101..26744119,- | |||
|id=chr18:26744101..26744119,- | |||
|ontology_enrichment_celltype=CL:0000055!4.56e-23!180;CL:0000222!4.50e-17!119;CL:0000057!3.96e-15!75;CL:0000548!2.42e-14!679;CL:0000004!2.42e-14!679;CL:0000255!2.42e-14!679;CL:0000012!5.74e-14!682;CL:0000144!3.33e-13!625;CL:0002371!6.54e-13!591;CL:0002139!2.18e-12!24;CL:0000220!8.66e-12!246;CL:0002321!1.85e-11!248;CL:0000071!3.40e-11!18;CL:0002546!3.40e-11!18;CL:0000680!7.19e-11!57;CL:0000056!7.19e-11!57;CL:0000355!7.19e-11!57;CL:0000003!4.39e-10!722;CL:0000187!1.42e-09!54;CL:0000192!1.50e-09!42;CL:0000514!1.50e-09!42;CL:1000413!2.32e-09!9;CL:0000115!4.21e-09!35;CL:0000393!4.98e-09!60;CL:0000211!4.98e-09!60;CL:0000183!1.14e-08!59;CL:0000213!1.17e-08!57;CL:0000215!1.17e-08!57;CL:0002334!7.28e-08!12;CL:0000076!9.08e-08!62;CL:0002620!1.64e-07!23;CL:0000048!3.43e-07!430;CL:0000723!4.31e-07!436;CL:0000359!9.48e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:1000413;5.19e-15;9!CL:0000071;1.42e-12;18!CL:0002595;7.05e-11;5!CL:0002139;1.98e-10;24!CL:0002544;3.05e-09;6!CL:0000115;1.71e-08;36!CL:0002504;4.06e-07;3!CL:1000279;4.06e-07;3!CL:1000280;4.06e-07;3!CL:0002620;4.11e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:1000413,3.94e-15,9;CL:0000071,9.84e-13,18;CL:0002546,9.84e-13,18;CL:0002595,4.19e-11,5;CL:0000222,5.59e-11,121;CL:0002139,1.44e-10,24;CL:0000115,8.57e-10,36;CL:0002544,1.52e-09,6;CL:0002078,3.58e-08,45;CL:0000057,3.70e-08,76;CL:0002504,5.17e-07,3;CL:1000279,5.17e-07,3;CL:1000280,5.17e-07,3;CL:0002620,6.68e-07,23;CL:0002321,7.50e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002546;1.42e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!5.22e-18!69;UBERON:0001981!5.99e-17!60;UBERON:0007500!5.99e-17!60;UBERON:0004537!5.99e-17!60;UBERON:0006965!5.99e-17!60;UBERON:0002049!1.47e-16!79;UBERON:0007798!1.47e-16!79;UBERON:0001637!3.91e-16!42;UBERON:0003509!3.91e-16!42;UBERON:0004572!3.91e-16!42;UBERON:0000490!6.39e-15!138;UBERON:0004573!1.14e-14!33;UBERON:0004571!1.14e-14!33;UBERON:0004872!7.72e-14!84;UBERON:0004535!1.21e-11!110;UBERON:0001986!3.40e-11!18;UBERON:0004638!3.40e-11!18;UBERON:0004852!3.40e-11!18;UBERON:0001009!7.28e-11!113;UBERON:0003914!8.79e-11!118;UBERON:0000914!1.39e-10!83;UBERON:0002329!1.39e-10!83;UBERON:0003077!1.39e-10!83;UBERON:0003059!1.39e-10!83;UBERON:0007282!1.39e-10!83;UBERON:0009618!1.39e-10!83;UBERON:0007285!1.39e-10!83;UBERON:0000486!3.76e-10!82;UBERON:0004290!6.12e-10!70;UBERON:0000487!1.74e-09!22;UBERON:0001134!2.11e-09!61;UBERON:0002036!2.11e-09!61;UBERON:0003082!2.11e-09!61;UBERON:0003915!2.32e-09!9;UBERON:0004700!2.32e-09!9;UBERON:0001917!2.32e-09!9;UBERON:0000947!2.38e-09!21;UBERON:0010191!2.38e-09!21;UBERON:0002385!2.53e-09!63;UBERON:0001015!2.53e-09!63;UBERON:0000383!2.53e-09!63;UBERON:0002100!6.74e-08!216;UBERON:0005256!9.75e-08!143;UBERON:0006914!1.21e-07!25;UBERON:0000119!4.28e-07!312;UBERON:0000475!9.37e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.07e-17;33!UBERON:0004571;1.07e-17;33!UBERON:0001637;6.94e-16;42!UBERON:0003509;6.94e-16;42!UBERON:0004572;6.94e-16;42!UBERON:0003915;5.19e-15;9!UBERON:0004700;5.19e-15;9!UBERON:0001917;5.19e-15;9!UBERON:0000947;1.08e-12;21!UBERON:0010191;1.08e-12;21!UBERON:0004638;1.42e-12;18!UBERON:0001986;1.42e-12;18!UBERON:0004852;1.42e-12;18!UBERON:0007500;1.65e-12;56!UBERON:0001981;1.65e-12;56!UBERON:0004537;1.65e-12;56!UBERON:0000487;1.20e-11;22!UBERON:0003834;7.05e-11;5!UBERON:0001533;7.05e-11;5!UBERON:0003513;1.46e-10;7!UBERON:0006914;6.75e-10;25!UBERON:0000055;6.60e-09;65!UBERON:0000490;6.81e-08;33!UBERON:0003914;6.71e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.11e-19,42;UBERON:0003509,1.11e-19,42;UBERON:0004572,1.11e-19,42;UBERON:0004573,2.10e-19,33;UBERON:0004571,2.10e-19,33;UBERON:0007500,5.80e-18,59;UBERON:0001981,5.80e-18,59;UBERON:0004537,5.80e-18,59;UBERON:0006965,5.80e-18,59;UBERON:0000055,6.42e-16,68;UBERON:0003915,3.94e-15,9;UBERON:0004700,3.94e-15,9;UBERON:0001917,3.94e-15,9;UBERON:0004872,5.90e-15,83;UBERON:0000947,5.29e-13,21;UBERON:0010191,5.29e-13,21;UBERON:0002049,6.54e-13,78;UBERON:0007798,6.54e-13,78;UBERON:0004638,9.84e-13,18;UBERON:0001986,9.84e-13,18;UBERON:0004852,9.84e-13,18;UBERON:0003914,1.94e-12,117;UBERON:0000487,7.48e-12,22;UBERON:0003834,4.19e-11,5;UBERON:0001533,4.19e-11,5;UBERON:0003513,9.14e-11,7;UBERON:0004535,2.52e-10,109;UBERON:0006914,4.49e-10,25;UBERON:0001009,7.75e-10,112;UBERON:0000490,7.07e-07,148 | |||
|phase1_expression=2.54349730978779,1.92690471501885,2.39622486963151,0,0.893922188854576,0.872338524100369,0,2.52687949370732,0,1.72013755551056,2.09340350391728,0.218441372130172,0,0,0,0,0.602694528023977,0,0,0.123121058076788,0,0,0,1.09499540058307,0.627713197974014,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.378139268656271,0.221729397462564,0.87834785693126,0,0,0,0,0,0,0,0,0,7.9504962946682,0.860234595106124,2.77712401286075,1.69592382577203,5.03399323451887,7.15306909044175,1.04497483268405,0.775250277507987,1.42306505074684,0.33472061276467,3.62546385398232,1.52054421143703,0.24406205754817,1.83831540172934,15.3926970097534,0.982297011124877,0,0.563057402416611,1.53316637465883,0,0.549605231791222,0,0,0,0,1.39293562831038,17.6104210481581,1.43418310374407,0,0,0,0.49333509683432,1.55605517699883,0,0.653847612453835,0,0,0.234321431833797,0,0.570471821544449,0,0.469737994575059,0.647491777472526,0.702254033511242,0.204154171254893,0.122834317311768,0.103325781175765,1.18800285728205,0.989067717114227,0.910161361938026,0,0,0.250237039743928,0.277064115484183,1.75591048352335,0.919463387397059,0,0.567160915800105,1.97328599257748,0,1.27159140695737,2.40072876867522,1.13357782162283,1.28820270022815,0,3.03797398034279,0.389748020644795,3.28163906517349,0.828449087780694,0,2.84007674013291,1.0075209822764,1.01736355386293,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0,0,0.201057944823262,0.0925884451585296,0,0,0,0,0.352226082707465,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0.93733833986777,0.503946384596579,0.283550194484773,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.7333828582095,1.03417372606222,0,1.690605505112,0.531876233169741,0,0.771622122786426,0,0,1.14382394926518,0,0.823240336780769,2.28015329005615,0.710783897485092,0.791951872933429,0.301439377059586,0,0.699810938274399,0,0,0,0,0,0,1.30303176000821,0.205476322550383,1.25342674267927,0,0,0,0,0.254094624222463,0,0,0.335032530668698,1.91381625495949,0,0,0,0,0,0,0,0.535286966391485,0.315404830067869,0,0.601892199455438,0,0,0,1.65932251687533,0.521301686808497,0,0,0,0,0,0.303127571446259,0,0,1.24053903909388,0.767309866440312,0.561320188866147,2.05022638809122,0,3.86049410744658,2.96836132889982,0.925258162815933,1.77561725313127,0.574890092096664,1.55776328755086,0.464841513839837,0,0.200506470303285,0,0.459257792658427,0.364182336013434,0.393373244878272,0,0.308061348417659,0,0,0,0,1.19065593693561,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0.308097234229289,0.15350367472613,2.89456802217514,0.537101224341368,0.725083469571143,0.93749290157711,0,0.330569830721956,0,2.93509238737543,0,1.85938219718914,14.4813679542094,3.485186350803,0.616067160352178,0.532306030317022,4.34966496037536,1.8532421910392,0.429374660225974,0,0,0,0.511795582622668,0,0,0.78494864019923,2.69808686374972,2.19629623788844,1.29593642580255,1.2130948894399,0,0.842516912477962,0.975267478179181,2.43713489631284,6.33900880540533,0.409499734223957,0.141405431953713,0,1.65409603063837,2.65375590096488,1.75380354101505,0,0.655894752046633,0.608731130888112,0.30982349809975,0,0.573645408816206,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0.86101074534246,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0.667852230137435,0,0,0,0.276283915531148,0,11.7608984877478,0,1.86623752597084,0.179736702294654,0.179021174675609,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.638002319463839,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0.992975867626496,0.313932918407225,3.58417289318877,0,0.554698692052555,0,0,0.0870592065804026,0,0.51595809741485,0,0,0,0,0,0,0.548167698587004,3.37814839895082,0.0633107959558787,0,0.160317640503067,0,0,0,0,0,0,0.248505071130865,0,2.03856309110421,1.882851233622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422401346077626,0,1.34340638123612,0,0,0,0,0,0.653174720218818,3.59190574687462,0,1.19271615249795,0.113312091520126,0,0,0,0,0,0,0.213574825135389,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0.151649117541648,0,0,0,0,0.895528817321244,1.40227985908335,2.77402930751307,0,1.0062716070103,1.77962244319307,0.915360273587694,1.05861646634267,1.39893480524502,1.33069634990671,3.02663857611035,0,0.931577741257556,1.65882483136342,0.265841714557995,0,0.751288044986092,0.761610424337591,0.813741466409323,0.727394636810238,0.214821114084977,1.39210127963548,0.796191777397232,0.800055529326307,0.343395705182793,0.6734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| ||
|short_description=p@chr18:26744101..26744119,- | |||
}} | }} |
Latest revision as of 00:15, 26 July 2015
Short description: | p@chr18:26744101..26744119, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:26744101..26744119, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of artery | 3.94e-15 | 9 |
blood vessel endothelial cell | 9.84e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.84e-13 | 18 |
smooth muscle cell of the subclavian artery | 4.19e-11 | 5 |
mesodermal cell | 5.59e-11 | 121 |
endothelial cell of vascular tree | 1.44e-10 | 24 |
endothelial cell | 8.57e-10 | 36 |
aortic endothelial cell | 1.52e-09 | 6 |
meso-epithelial cell | 3.58e-08 | 45 |
fibroblast | 3.70e-08 | 76 |
enteric smooth muscle cell | 5.17e-07 | 3 |
smooth muscle cell of large intestine | 5.17e-07 | 3 |
smooth muscle cell of colon | 5.17e-07 | 3 |
skin fibroblast | 6.68e-07 | 23 |
embryonic cell | 7.50e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
artery | 1.11e-19 | 42 |
arterial blood vessel | 1.11e-19 | 42 |
arterial system | 1.11e-19 | 42 |
systemic artery | 2.10e-19 | 33 |
systemic arterial system | 2.10e-19 | 33 |
epithelial tube open at both ends | 5.80e-18 | 59 |
blood vessel | 5.80e-18 | 59 |
blood vasculature | 5.80e-18 | 59 |
vascular cord | 5.80e-18 | 59 |
vessel | 6.42e-16 | 68 |
endothelial tube | 3.94e-15 | 9 |
arterial system endothelium | 3.94e-15 | 9 |
endothelium of artery | 3.94e-15 | 9 |
splanchnic layer of lateral plate mesoderm | 5.90e-15 | 83 |
aorta | 5.29e-13 | 21 |
aortic system | 5.29e-13 | 21 |
vasculature | 6.54e-13 | 78 |
vascular system | 6.54e-13 | 78 |
blood vessel endothelium | 9.84e-13 | 18 |
endothelium | 9.84e-13 | 18 |
cardiovascular system endothelium | 9.84e-13 | 18 |
epithelial tube | 1.94e-12 | 117 |
simple squamous epithelium | 7.48e-12 | 22 |
thoracic segment blood vessel | 4.19e-11 | 5 |
subclavian artery | 4.19e-11 | 5 |
trunk blood vessel | 9.14e-11 | 7 |
cardiovascular system | 2.52e-10 | 109 |
squamous epithelium | 4.49e-10 | 25 |
circulatory system | 7.75e-10 | 112 |
unilaminar epithelium | 7.07e-07 | 148 |