FFCP PHASE1:Hg19::chr19:13068012..13068053,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:13068012..13068053,- to FFCP PHASE1:Hg19::chr19:13068012..13068053,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=90480 | |EntrezGene=90480 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29996 | |HGNC=29996 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TAE8 | |UniProt=Q8TAE8 | ||
|association_with_transcript=0bp_to_ENST00000316939,NM_052850,uc002mwb.2_5end | |||
|cluster_id=chr19:13068012..13068053,- | |||
|coexpression_cluster_id=C534 | |||
|description=CAGE_peak_1_at_GADD45GIP1_5end | |||
|id=chr19:13068012..13068053,- | |||
|ontology_enrichment_celltype=CL:0002321!6.12e-31!248;CL:0000220!1.82e-30!246;CL:0000548!1.31e-29!679;CL:0000004!1.31e-29!679;CL:0000255!1.31e-29!679;CL:0000012!5.77e-29!682;CL:0000055!2.98e-23!180;CL:0000222!2.98e-23!119;CL:0000144!5.04e-23!625;CL:0002371!5.89e-19!591;CL:0000183!8.96e-18!59;CL:0000393!1.27e-16!60;CL:0000211!1.27e-16!60;CL:0000003!6.11e-16!722;CL:0000187!1.30e-15!54;CL:0000680!2.55e-15!57;CL:0000056!2.55e-15!57;CL:0000355!2.55e-15!57;CL:0000066!8.71e-15!254;CL:0000192!4.22e-14!42;CL:0000514!4.22e-14!42;CL:0000359!3.00e-12!32;CL:0002078!5.78e-08!44;CL:0000213!9.51e-08!57;CL:0000215!9.51e-08!57;CL:0000221!9.95e-08!71;CL:1000449!2.60e-07!16;CL:0000071!3.30e-07!18;CL:0002546!3.30e-07!18;CL:1000497!4.01e-07!18;CL:0002518!4.01e-07!18;CL:0000076!5.47e-07!62;CL:0000115!6.06e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.89e-11;32!CL:0000192;2.85e-10;43!CL:0000187;5.66e-09;55!CL:0000393;1.39e-08;61!CL:0000211;1.39e-08;61!CL:1000449;2.77e-07;15!CL:0000071;3.31e-07;18!CL:1000497;4.54e-07;17!CL:0002518;4.54e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.64e-31,250;CL:0000222,9.32e-24,121;CL:0000393,1.03e-16,61;CL:0000211,1.03e-16,61;CL:0000187,1.07e-15,55;CL:0000680,2.07e-15,58;CL:0000056,2.07e-15,58;CL:0000355,2.07e-15,58;CL:0000066,1.19e-14,253;CL:0000192,3.63e-14,43;CL:0000514,3.63e-14,43;CL:0000359,3.00e-12,32;CL:0002078,2.77e-08,45;CL:0000213,4.80e-08,58;CL:0000215,4.80e-08,58;CL:0000221,7.34e-08,72;CL:1000449,2.73e-07,15;CL:0000115,2.89e-07,36;CL:0000071,3.30e-07,18;CL:0002546,3.30e-07,18;CL:0000076,4.05e-07,63;CL:1000497,4.46e-07,17;CL:0002518,4.46e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;2.85e-10;43!CL:0000355;9.45e-09;58!CL:0002546;3.31e-07;18!CL:0000222;7.15e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.93e-18!83;UBERON:0002329!1.93e-18!83;UBERON:0003077!1.93e-18!83;UBERON:0003059!1.93e-18!83;UBERON:0007282!1.93e-18!83;UBERON:0009618!1.93e-18!83;UBERON:0007285!1.93e-18!83;UBERON:0004290!2.85e-18!70;UBERON:0000486!4.31e-18!82;UBERON:0005256!1.58e-17!143;UBERON:0001134!1.51e-15!61;UBERON:0002036!1.51e-15!61;UBERON:0003082!1.51e-15!61;UBERON:0000490!2.69e-15!138;UBERON:0003914!9.76e-15!118;UBERON:0002049!1.13e-14!79;UBERON:0007798!1.13e-14!79;UBERON:0001981!1.35e-14!60;UBERON:0007500!1.35e-14!60;UBERON:0004537!1.35e-14!60;UBERON:0006965!1.35e-14!60;UBERON:0003104!4.04e-14!238;UBERON:0009142!4.04e-14!238;UBERON:0000055!4.60e-14!69;UBERON:0002385!5.21e-14!63;UBERON:0001015!5.21e-14!63;UBERON:0000383!5.21e-14!63;UBERON:0001637!5.33e-14!42;UBERON:0003509!5.33e-14!42;UBERON:0004572!5.33e-14!42;UBERON:0004872!1.27e-13!84;UBERON:0002100!1.36e-13!216;UBERON:0004573!1.42e-09!33;UBERON:0004571!1.42e-09!33;UBERON:0000119!5.98e-08!312;UBERON:0001009!7.48e-08!113;UBERON:0000483!1.14e-07!309;UBERON:0004535!1.36e-07!110;UBERON:0004211!2.60e-07!16;UBERON:0001285!2.60e-07!16;UBERON:0007684!2.60e-07!16;UBERON:0003220!2.60e-07!16;UBERON:0004208!2.60e-07!16;UBERON:0001986!3.30e-07!18;UBERON:0004638!3.30e-07!18;UBERON:0004852!3.30e-07!18;UBERON:0000481!9.70e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;6.84e-10;42!UBERON:0003509;6.84e-10;42!UBERON:0004572;6.84e-10;42!UBERON:0003914;2.37e-09;74!UBERON:0007500;2.56e-09;56!UBERON:0001981;2.56e-09;56!UBERON:0004537;2.56e-09;56!UBERON:0004573;1.31e-08;33!UBERON:0004571;1.31e-08;33!UBERON:0006555;2.77e-07;15!UBERON:0004819;2.77e-07;15!UBERON:0001285;2.77e-07;15!UBERON:0007684;2.77e-07;15!UBERON:0004638;3.31e-07;18!UBERON:0001986;3.31e-07;18!UBERON:0004852;3.31e-07;18!UBERON:0000055;3.61e-07;65!UBERON:0000490;4.35e-07;33!UBERON:0000353;7.74e-07;15 | |||
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| ||
|short_description=p1@GADD45GIP1 | |||
}} | }} |
Latest revision as of 22:50, 15 September 2015
Short description: | p1@GADD45GIP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GADD45GIP1_5end |
Coexpression cluster: | C534_Mesenchymal_Alveolar_Renal_Placental_Fibroblast_Smooth_Tracheal |
Association with transcript: | 0bp_to_ENST00000316939, NM_052850, uc002mwb.2_5end |
EntrezGene: | GADD45GIP1 |
HGNC: | 29996 |
UniProt: | Q8TAE8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.64e-31 | 250 |
mesodermal cell | 9.32e-24 | 121 |
electrically responsive cell | 1.03e-16 | 61 |
electrically active cell | 1.03e-16 | 61 |
muscle cell | 1.07e-15 | 55 |
muscle precursor cell | 2.07e-15 | 58 |
myoblast | 2.07e-15 | 58 |
multi-potent skeletal muscle stem cell | 2.07e-15 | 58 |
epithelial cell | 1.19e-14 | 253 |
smooth muscle cell | 3.63e-14 | 43 |
smooth muscle myoblast | 3.63e-14 | 43 |
vascular associated smooth muscle cell | 3.00e-12 | 32 |
meso-epithelial cell | 2.77e-08 | 45 |
lining cell | 4.80e-08 | 58 |
barrier cell | 4.80e-08 | 58 |
ectodermal cell | 7.34e-08 | 72 |
epithelial cell of nephron | 2.73e-07 | 15 |
endothelial cell | 2.89e-07 | 36 |
blood vessel endothelial cell | 3.30e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.30e-07 | 18 |
squamous epithelial cell | 4.05e-07 | 63 |
kidney cell | 4.46e-07 | 17 |
kidney epithelial cell | 4.46e-07 | 17 |