FFCP PHASE1:Hg19::chr19:3185910..3185962,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:3185910..3185962,+ to FFCP PHASE1:Hg19::chr19:3185910..3185962,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56926 | |EntrezGene=56926 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26923 | |HGNC=26923 | ||
|TSSclassifier=strong | |||
|UniProt=Q969V3 | |UniProt=Q969V3 | ||
|association_with_transcript=35bp_to_ENST00000246117,NM_020170,uc002lxh.1,uc002lxi.2_5end | |||
|cluster_id=chr19:3185910..3185962,+ | |||
|coexpression_cluster_id=C887 | |||
|description=CAGE_peak_1_at_NCLN_5end | |||
|id=chr19:3185910..3185962,+ | |||
|ontology_enrichment_celltype=CL:0000144!7.13e-31!625;CL:0000548!2.46e-30!679;CL:0000004!2.46e-30!679;CL:0000255!2.46e-30!679;CL:0000055!1.43e-29!180;CL:0000012!1.53e-29!682;CL:0002321!3.94e-29!248;CL:0000220!1.12e-28!246;CL:0002371!2.05e-26!591;CL:0000222!5.51e-20!119;CL:0000003!8.07e-20!722;CL:0000183!1.14e-14!59;CL:0000057!3.58e-13!75;CL:0000680!3.79e-13!57;CL:0000056!3.79e-13!57;CL:0000355!3.79e-13!57;CL:0000187!2.27e-12!54;CL:0000393!2.80e-12!60;CL:0000211!2.80e-12!60;CL:0000192!4.90e-12!42;CL:0000514!4.90e-12!42;CL:0000066!4.24e-11!254;CL:0000063!3.82e-10!578;CL:0000359!6.63e-10!32;CL:0000213!1.06e-07!57;CL:0000215!1.06e-07!57;CL:1000449!3.86e-07!16;CL:0000076!6.21e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.24e-09;32!CL:0000192;1.18e-08;43!CL:1000449;1.37e-07;15!CL:0000187;9.38e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.93e-29,250;CL:0000222,3.32e-20,121;CL:0000057,4.75e-13,76;CL:0000680,6.44e-13,58;CL:0000056,6.44e-13,58;CL:0000355,6.44e-13,58;CL:0000187,3.84e-12,55;CL:0000393,4.49e-12,61;CL:0000211,4.49e-12,61;CL:0000192,9.34e-12,43;CL:0000514,9.34e-12,43;CL:0000066,3.81e-11,253;CL:0000359,6.63e-10,32;CL:0000213,5.02e-08,58;CL:0000215,5.02e-08,58;CL:1000449,1.44e-07,15;CL:0000076,3.67e-07,63;CL:0000221,7.99e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000514;1.18e-08;43!CL:0000355;3.75e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.06e-16!118;UBERON:0005256!2.83e-15!143;UBERON:0000486!3.68e-14!82;UBERON:0000490!4.87e-14!138;UBERON:0004290!1.81e-13!70;UBERON:0000055!1.93e-13!69;UBERON:0001637!2.11e-13!42;UBERON:0003509!2.11e-13!42;UBERON:0004572!2.11e-13!42;UBERON:0002049!2.57e-13!79;UBERON:0007798!2.57e-13!79;UBERON:0001981!3.18e-13!60;UBERON:0007500!3.18e-13!60;UBERON:0004537!3.18e-13!60;UBERON:0006965!3.18e-13!60;UBERON:0000914!7.86e-13!83;UBERON:0002329!7.86e-13!83;UBERON:0003077!7.86e-13!83;UBERON:0003059!7.86e-13!83;UBERON:0007282!7.86e-13!83;UBERON:0009618!7.86e-13!83;UBERON:0007285!7.86e-13!83;UBERON:0004872!8.46e-13!84;UBERON:0002100!1.70e-10!216;UBERON:0001134!1.87e-10!61;UBERON:0002036!1.87e-10!61;UBERON:0003082!1.87e-10!61;UBERON:0002385!1.00e-09!63;UBERON:0001015!1.00e-09!63;UBERON:0000383!1.00e-09!63;UBERON:0004573!1.03e-09!33;UBERON:0004571!1.03e-09!33;UBERON:0003104!1.58e-09!238;UBERON:0009142!1.58e-09!238;UBERON:0000119!2.38e-09!312;UBERON:0000483!7.92e-09!309;UBERON:0004535!2.48e-08!110;UBERON:0003102!6.22e-08!95;UBERON:0002199!9.90e-08!45;UBERON:0002416!9.90e-08!45;UBERON:0001009!1.04e-07!113;UBERON:0004211!3.86e-07!16;UBERON:0001285!3.86e-07!16;UBERON:0007684!3.86e-07!16;UBERON:0003220!3.86e-07!16;UBERON:0004208!3.86e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.40e-10;42!UBERON:0003509;2.40e-10;42!UBERON:0004572;2.40e-10;42!UBERON:0003914;7.98e-10;74!UBERON:0004573;4.59e-09;33!UBERON:0004571;4.59e-09;33!UBERON:0007500;5.33e-09;56!UBERON:0001981;5.33e-09;56!UBERON:0004537;5.33e-09;56!UBERON:0000055;8.94e-08;65!UBERON:0006555;1.37e-07;15!UBERON:0004819;1.37e-07;15!UBERON:0001285;1.37e-07;15!UBERON:0007684;1.37e-07;15!UBERON:0000490;4.71e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,7.56e-17,117;UBERON:0000490,9.28e-17,148;UBERON:0007503,2.24e-16,78;UBERON:0000486,5.53e-14,83;UBERON:0000055,1.39e-13,68;UBERON:0002049,1.95e-13,78;UBERON:0007798,1.95e-13,78;UBERON:0001637,2.11e-13,42;UBERON:0003509,2.11e-13,42;UBERON:0004572,2.11e-13,42;UBERON:0007500,2.18e-13,59;UBERON:0001981,2.18e-13,59;UBERON:0004537,2.18e-13,59;UBERON:0006965,2.18e-13,59;UBERON:0003104,2.42e-13,160;UBERON:0009142,2.42e-13,160;UBERON:0002329,2.84e-13,71;UBERON:0003059,2.84e-13,71;UBERON:0007282,2.84e-13,71;UBERON:0004290,2.84e-13,71;UBERON:0009618,2.84e-13,71;UBERON:0005256,4.85e-13,122;UBERON:0004872,6.62e-13,83;UBERON:0007524,7.38e-13,73;UBERON:0003077,1.17e-12,72;UBERON:0007285,1.17e-12,72;UBERON:0002100,4.94e-11,199;UBERON:0001134,2.78e-10,62;UBERON:0002036,2.78e-10,62;UBERON:0003082,2.78e-10,62;UBERON:0000119,6.32e-10,309;UBERON:0004573,1.03e-09,33;UBERON:0004571,1.03e-09,33;UBERON:0002385,1.43e-09,64;UBERON:0001015,1.43e-09,64;UBERON:0000383,1.43e-09,64;UBERON:0000483,2.19e-09,306;UBERON:0004535,2.24e-08,109;UBERON:0002199,5.53e-08,46;UBERON:0002416,5.53e-08,46;UBERON:0003102,6.42e-08,99;UBERON:0001009,9.58e-08,112;UBERON:0004211,1.44e-07,15;UBERON:0009773,1.44e-07,15;UBERON:0001231,1.44e-07,15;UBERON:0001285,1.44e-07,15;UBERON:0007684,1.44e-07,15;UBERON:0004208,1.44e-07,15 | |||
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| ||
|short_description=p1@NCLN | |||
}} | }} |
Latest revision as of 05:24, 17 September 2015
Short description: | p1@NCLN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NCLN_5end |
Coexpression cluster: | C887_Mesenchymal_Alveolar_Smooth_Renal_Fibroblast_leiomyoma_Preadipocyte |
Association with transcript: | 35bp_to_ENST00000246117, NM_020170, uc002lxh.1, uc002lxi.2_5end |
EntrezGene: | NCLN |
HGNC: | 26923 |
UniProt: | Q969V3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.93e-29 | 250 |
mesodermal cell | 3.32e-20 | 121 |
fibroblast | 4.75e-13 | 76 |
muscle precursor cell | 6.44e-13 | 58 |
myoblast | 6.44e-13 | 58 |
multi-potent skeletal muscle stem cell | 6.44e-13 | 58 |
muscle cell | 3.84e-12 | 55 |
electrically responsive cell | 4.49e-12 | 61 |
electrically active cell | 4.49e-12 | 61 |
smooth muscle cell | 9.34e-12 | 43 |
smooth muscle myoblast | 9.34e-12 | 43 |
epithelial cell | 3.81e-11 | 253 |
vascular associated smooth muscle cell | 6.63e-10 | 32 |
lining cell | 5.02e-08 | 58 |
barrier cell | 5.02e-08 | 58 |
epithelial cell of nephron | 1.44e-07 | 15 |
squamous epithelial cell | 3.67e-07 | 63 |
ectodermal cell | 7.99e-07 | 72 |