FFCP PHASE1:Hg19::chr19:6424813..6424835,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:6424813..6424835,- to FFCP PHASE1:Hg19::chr19:6424813..6424835,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8570 | |EntrezGene=8570 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6316 | |HGNC=6316 | ||
|TSSclassifier=strong | |||
|UniProt=Q92945 | |UniProt=Q92945 | ||
|association_with_transcript=0bp_to_ENST00000201886,ENST00000398148,NM_003685,uc002mer.3_5end | |||
|cluster_id=chr19:6424813..6424835,- | |||
|description=CAGE_peak_1_at_KHSRP_5end | |||
|id=chr19:6424813..6424835,- | |||
|ontology_enrichment_celltype=CL:0000012!9.41e-21!682;CL:0000548!9.67e-21!679;CL:0000004!9.67e-21!679;CL:0000255!9.67e-21!679;CL:0000066!1.03e-17!254;CL:0002321!1.05e-17!248;CL:0000220!6.09e-17!246;CL:0000144!1.50e-14!625;CL:0000003!5.72e-11!722;CL:0002371!4.80e-10!591;CL:0000076!5.95e-08!62;CL:0000221!6.48e-08!71;CL:0000222!7.37e-08!119;CL:0000115!1.37e-07!35;CL:1000449!1.43e-07!16;CL:0000333!1.59e-07!41;CL:0002078!1.62e-07!44;CL:0000133!2.36e-07!59;CL:0000055!4.17e-07!180;CL:0000213!8.36e-07!57;CL:0000215!8.36e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:1000449;8.14e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.52e-18,250;CL:0000066,1.11e-17,253;CL:0000222,5.23e-08,121;CL:0000076,6.32e-08,63;CL:0000221,6.72e-08,72;CL:1000449,8.32e-08,15;CL:0000115,9.86e-08,36;CL:0002078,1.15e-07,45;CL:0000333,1.59e-07,41;CL:0000133,2.36e-07,59;CL:0000213,6.02e-07,58;CL:0000215,6.02e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!3.87e-13!239;DOID:162!4.66e-13!235;DOID:2531!1.92e-12!51;DOID:0060083!1.92e-12!51;DOID:1240!3.79e-10!39;DOID:8692!4.94e-08!31;DOID:0050686!1.37e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:1240;2.71e-08;39!DOID:8692;7.37e-08;31!DOID:2531;1.53e-07;51!DOID:0060083;1.53e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.87e-13,239;DOID:162,4.66e-13,235;DOID:2531,1.92e-12,51;DOID:0060083,1.92e-12,51;DOID:1240,3.79e-10,39;DOID:8692,4.94e-08,31;DOID:0050686,1.37e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0004211!1.43e-07!16;UBERON:0001285!1.43e-07!16;UBERON:0007684!1.43e-07!16;UBERON:0003220!1.43e-07!16;UBERON:0004208!1.43e-07!16;UBERON:0005085!7.47e-07!29;UBERON:0006555!9.71e-07!17;UBERON:0005103!9.71e-07!17;UBERON:0000083!9.71e-07!17;UBERON:0009201!9.71e-07!17;UBERON:0004819!9.71e-07!17;UBERON:0006553!9.71e-07!17;UBERON:0003074!9.71e-07!17;UBERON:0003060!9.71e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;8.14e-08;15!UBERON:0004819;8.14e-08;15!UBERON:0001285;8.14e-08;15!UBERON:0007684;8.14e-08;15!UBERON:0006554;3.16e-07;30!UBERON:0001008;3.16e-07;30!UBERON:0000353;3.22e-07;15!UBERON:0002113;8.60e-07;24!UBERON:0011143;8.60e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,8.32e-08,15;UBERON:0009773,8.32e-08,15;UBERON:0001231,8.32e-08,15;UBERON:0001285,8.32e-08,15;UBERON:0007684,8.32e-08,15;UBERON:0004208,8.32e-08,15;UBERON:0000353,3.25e-07,15;UBERON:0006555,6.48e-07,16;UBERON:0004819,6.48e-07,16 | |||
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164183563 | ||
|short_description=p1@KHSRP | |||
}} | }} |
Latest revision as of 16:03, 24 September 2015
Short description: | p1@KHSRP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KHSRP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000201886, ENST00000398148, NM_003685, uc002mer.3_5end |
EntrezGene: | KHSRP |
HGNC: | 6316 |
UniProt: | Q92945 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.52e-18 | 250 |
epithelial cell | 1.11e-17 | 253 |
mesodermal cell | 5.23e-08 | 121 |
squamous epithelial cell | 6.32e-08 | 63 |
ectodermal cell | 6.72e-08 | 72 |
epithelial cell of nephron | 8.32e-08 | 15 |
endothelial cell | 9.86e-08 | 36 |
meso-epithelial cell | 1.15e-07 | 45 |
migratory neural crest cell | 1.59e-07 | 41 |
neurectodermal cell | 2.36e-07 | 59 |
lining cell | 6.02e-07 | 58 |
barrier cell | 6.02e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 8.32e-08 | 15 |
renal tubule | 8.32e-08 | 15 |
nephron tubule | 8.32e-08 | 15 |
nephron | 8.32e-08 | 15 |
uriniferous tubule | 8.32e-08 | 15 |
nephrogenic mesenchyme | 8.32e-08 | 15 |
parenchyma | 3.25e-07 | 15 |
excretory tube | 6.48e-07 | 16 |
kidney epithelium | 6.48e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.87e-13 | 239 |
cancer | 4.66e-13 | 235 |
hematologic cancer | 1.92e-12 | 51 |
immune system cancer | 1.92e-12 | 51 |
leukemia | 3.79e-10 | 39 |
myeloid leukemia | 4.94e-08 | 31 |
organ system cancer | 1.37e-07 | 137 |