FFCP PHASE1:Hg19::chr2:201754056..201754130,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:201754056..201754130,+ to FFCP PHASE1:Hg19::chr2:201754056..201754130,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=60491 | |EntrezGene=60491 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13390 | |HGNC=13390 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZT8,C9JN42 | |UniProt=Q9GZT8,C9JN42 | ||
|association_with_transcript=0bp_to_ENST00000359683,ENST00000409020,ENST00000454952,NM_021824,uc002uwn.2,uc002uwo.2_5end | |||
|cluster_id=chr2:201754056..201754130,+ | |||
|description=CAGE_peak_1_at_NIF3L1_5end | |||
|id=chr2:201754056..201754130,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!6.32e-11!143;DOID:305!3.96e-10!106;DOID:162!5.96e-10!235;DOID:14566!2.76e-09!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,6.31e-11,143;DOID:305,3.96e-10,106;DOID:162,5.95e-10,235;DOID:14566,2.75e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.32e-11!86;UBERON:0000073!1.85e-11!94;UBERON:0001016!1.85e-11!94;UBERON:0001017!2.64e-11!82;UBERON:0001049!3.18e-11!57;UBERON:0005068!3.18e-11!57;UBERON:0006241!3.18e-11!57;UBERON:0007135!3.18e-11!57;UBERON:0002780!4.27e-10!41;UBERON:0001890!4.27e-10!41;UBERON:0006240!4.27e-10!41;UBERON:0000955!1.02e-09!69;UBERON:0006238!1.02e-09!69;UBERON:0003080!1.21e-09!42;UBERON:0002616!1.66e-09!59;UBERON:0001893!1.80e-09!34;UBERON:0002791!3.71e-09!33;UBERON:0001869!5.26e-09!32;UBERON:0002020!9.97e-09!34;UBERON:0003528!9.97e-09!34;UBERON:0002346!3.10e-08!90;UBERON:0000924!5.35e-08!173;UBERON:0006601!5.35e-08!173;UBERON:0003075!1.10e-07!86;UBERON:0007284!1.10e-07!86;UBERON:0004121!1.66e-07!169;UBERON:0003056!4.43e-07!61;UBERON:0007023!6.65e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.00e-08;34!UBERON:0001869;3.49e-08;32!UBERON:0002791;4.70e-08;32!UBERON:0003528;7.87e-08;34!UBERON:0002020;7.87e-08;34!UBERON:0002780;3.91e-07;41!UBERON:0001890;3.91e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.23e-11,56;UBERON:0005068,1.23e-11,56;UBERON:0006241,1.23e-11,56;UBERON:0007135,1.23e-11,56;UBERON:0001017,1.26e-11,81;UBERON:0001016,1.93e-11,89;UBERON:0000073,4.08e-11,53;UBERON:0002616,4.08e-11,53;UBERON:0002780,4.26e-10,41;UBERON:0001890,4.26e-10,41;UBERON:0003080,4.26e-10,41;UBERON:0006240,4.26e-10,41;UBERON:0000955,4.91e-10,68;UBERON:0006238,4.91e-10,68;UBERON:0011216,5.64e-10,223;UBERON:0001893,1.80e-09,34;UBERON:0001869,5.25e-09,32;UBERON:0002791,8.91e-09,32;UBERON:0003528,9.96e-09,34;UBERON:0002020,9.96e-09,34;UBERON:0002346,2.64e-08,86;UBERON:0004121,3.13e-08,171;UBERON:0000924,3.13e-08,171;UBERON:0006601,3.13e-08,171;UBERON:0003075,9.51e-08,82;UBERON:0007284,9.51e-08,82;UBERON:0003056,4.50e-07,61;UBERON:0007023,7.68e-07,114 | |||
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| ||
|short_description=p1@NIF3L1 | |||
}} | }} |
Latest revision as of 11:32, 19 September 2015
Short description: | p1@NIF3L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NIF3L1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000359683, ENST00000409020, ENST00000454952, NM_021824, uc002uwn.2, uc002uwo.2_5end |
EntrezGene: | NIF3L1 |
HGNC: | 13390 |
UniProt: | Q9GZT8C9JN42 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.23e-11 | 56 |
neural rod | 1.23e-11 | 56 |
future spinal cord | 1.23e-11 | 56 |
neural keel | 1.23e-11 | 56 |
central nervous system | 1.26e-11 | 81 |
nervous system | 1.93e-11 | 89 |
regional part of nervous system | 4.08e-11 | 53 |
regional part of brain | 4.08e-11 | 53 |
regional part of forebrain | 4.26e-10 | 41 |
forebrain | 4.26e-10 | 41 |
anterior neural tube | 4.26e-10 | 41 |
future forebrain | 4.26e-10 | 41 |
brain | 4.91e-10 | 68 |
future brain | 4.91e-10 | 68 |
organ system subdivision | 5.64e-10 | 223 |
telencephalon | 1.80e-09 | 34 |
cerebral hemisphere | 5.25e-09 | 32 |
regional part of telencephalon | 8.91e-09 | 32 |
brain grey matter | 9.96e-09 | 34 |
gray matter | 9.96e-09 | 34 |
neurectoderm | 2.64e-08 | 86 |
ectoderm-derived structure | 3.13e-08 | 171 |
ectoderm | 3.13e-08 | 171 |
presumptive ectoderm | 3.13e-08 | 171 |
neural plate | 9.51e-08 | 82 |
presumptive neural plate | 9.51e-08 | 82 |
pre-chordal neural plate | 4.50e-07 | 61 |
adult organism | 7.68e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 6.31e-11 | 143 |
carcinoma | 3.96e-10 | 106 |
cancer | 5.95e-10 | 235 |
disease of cellular proliferation | 2.75e-09 | 239 |