FFCP PHASE1:Hg19::chr2:216248106..216248212,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216248106..216248212,- to FFCP PHASE1:Hg19::chr2:216248106..216248212,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt=A6YID5,A6YID7 | |UniProt=A6YID5,A6YID7 | ||
|association_with_transcript=0bp_to_ENST00000490833,uc010fvc.1,uc010fvd.1_5end | |||
|cluster_id=chr2:216248106..216248212,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_11_at_FN1_5end | |||
|id=chr2:216248106..216248212,- | |||
|ontology_enrichment_celltype=CL:0000055!5.79e-34!180;CL:0000057!2.17e-23!75;CL:0000680!1.17e-14!57;CL:0000056!1.17e-14!57;CL:0000355!1.17e-14!57;CL:0000183!3.47e-14!59;CL:0000187!2.22e-13!54;CL:0000220!2.62e-12!246;CL:0002371!4.83e-12!591;CL:0002321!6.49e-12!248;CL:0000222!6.69e-12!119;CL:0000393!9.16e-11!60;CL:0000211!9.16e-11!60;CL:0000144!1.36e-10!625;CL:0002620!2.13e-09!23;CL:0000192!3.33e-09!42;CL:0000514!3.33e-09!42;CL:0000359!1.33e-07!32;CL:0002334!1.61e-07!12;CL:0002494!3.01e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.03e-12;55!CL:0000723;5.42e-11;61!CL:0000057;1.28e-10;73!CL:0000048;5.14e-10;58!CL:0002620;8.87e-10;23!CL:0002320;5.21e-09;188!CL:0000187;7.96e-09;55!CL:0000349;8.08e-09;19!CL:0000034;2.63e-08;69!CL:0002334;3.80e-08;12!CL:0000359;6.94e-08;32!CL:0002494;8.55e-08;16!CL:0000192;1.16e-07;43!CL:0000499;5.02e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.26e-26,76;CL:0000680,1.91e-16,58;CL:0000056,1.91e-16,58;CL:0000355,1.91e-16,58;CL:0000187,4.99e-15,55;CL:0000048,3.32e-13,427;CL:0000723,1.12e-12,433;CL:0000034,6.11e-12,441;CL:0000393,1.32e-11,61;CL:0000211,1.32e-11,61;CL:0000222,4.46e-11,121;CL:0000192,2.15e-10,43;CL:0000514,2.15e-10,43;CL:0002321,7.40e-10,250;CL:0002620,9.66e-10,23;CL:0000349,7.78e-09,19;CL:0000359,3.12e-08,32;CL:0002334,3.84e-08,12;CL:0002494,7.65e-08,16;CL:0000499,5.20e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000355;5.55e-09;58!CL:0000514;1.16e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.43e-19!143;UBERON:0000914!1.58e-17!83;UBERON:0002329!1.58e-17!83;UBERON:0003077!1.58e-17!83;UBERON:0003059!1.58e-17!83;UBERON:0007282!1.58e-17!83;UBERON:0009618!1.58e-17!83;UBERON:0007285!1.58e-17!83;UBERON:0004290!2.23e-16!70;UBERON:0000486!2.29e-16!82;UBERON:0003914!2.33e-15!118;UBERON:0000490!7.34e-14!138;UBERON:0001134!8.20e-14!61;UBERON:0002036!8.20e-14!61;UBERON:0003082!8.20e-14!61;UBERON:0004872!1.33e-13!84;UBERON:0002385!1.42e-13!63;UBERON:0001015!1.42e-13!63;UBERON:0000383!1.42e-13!63;UBERON:0002100!1.72e-13!216;UBERON:0002049!4.10e-12!79;UBERON:0007798!4.10e-12!79;UBERON:0000468!8.67e-12!659;UBERON:0000475!1.32e-11!365;UBERON:0000119!3.63e-11!312;UBERON:0000483!9.88e-11!309;UBERON:0001009!6.29e-10!113;UBERON:0003102!6.35e-10!95;UBERON:0004535!6.67e-10!110;UBERON:0002199!8.35e-10!45;UBERON:0002416!8.35e-10!45;UBERON:0000055!1.98e-09!69;UBERON:0001637!2.24e-09!42;UBERON:0003509!2.24e-09!42;UBERON:0004572!2.24e-09!42;UBERON:0001981!5.83e-09!60;UBERON:0007500!5.83e-09!60;UBERON:0004537!5.83e-09!60;UBERON:0006965!5.83e-09!60;UBERON:0003104!7.48e-09!238;UBERON:0009142!7.48e-09!238;UBERON:0002097!2.87e-08!40;UBERON:0004923!3.51e-08!57;UBERON:0000481!3.56e-08!347;UBERON:0000467!4.44e-08!625;UBERON:0000480!6.74e-08!626;UBERON:0000948!1.06e-07!24;UBERON:0005498!1.06e-07!24;UBERON:0004140!1.06e-07!24;UBERON:0009881!1.06e-07!24;UBERON:0004141!1.06e-07!24;UBERON:0003084!1.06e-07!24;UBERON:0007005!1.06e-07!24;UBERON:0004139!1.06e-07!24;UBERON:0004291!1.06e-07!24;UBERON:0004573!1.83e-07!33;UBERON:0004571!1.83e-07!33;UBERON:0007100!2.17e-07!27;UBERON:0000477!5.29e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.90e-08;198!UBERON:0002097;3.31e-07;41!UBERON:0002199;3.76e-07;46!UBERON:0002416;3.76e-07;46!UBERON:0000478;4.70e-07;24!UBERON:0001637;5.55e-07;42!UBERON:0003509;5.55e-07;42!UBERON:0004572;5.55e-07;42!UBERON:0000948;5.87e-07;22!UBERON:0002385;6.87e-07;31!UBERON:0001015;6.87e-07;31!UBERON:0000383;6.87e-07;31!UBERON:0001013;8.95e-07;14 | |||
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| ||
|short_description=p11@FN1 | |||
}} | }} |
Latest revision as of 02:34, 20 September 2015
Short description: | p11@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000490833, uc010fvc.1, uc010fvd.1_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | A6YID5A6YID7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.26e-26 | 76 |
muscle precursor cell | 1.91e-16 | 58 |
myoblast | 1.91e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.91e-16 | 58 |
muscle cell | 4.99e-15 | 55 |
multi fate stem cell | 3.32e-13 | 427 |
somatic stem cell | 1.12e-12 | 433 |
stem cell | 6.11e-12 | 441 |
electrically responsive cell | 1.32e-11 | 61 |
electrically active cell | 1.32e-11 | 61 |
mesodermal cell | 4.46e-11 | 121 |
smooth muscle cell | 2.15e-10 | 43 |
smooth muscle myoblast | 2.15e-10 | 43 |
embryonic cell | 7.40e-10 | 250 |
skin fibroblast | 9.66e-10 | 23 |
extraembryonic cell | 7.78e-09 | 19 |
vascular associated smooth muscle cell | 3.12e-08 | 32 |
preadipocyte | 3.84e-08 | 12 |
cardiocyte | 7.65e-08 | 16 |
stromal cell | 5.20e-07 | 28 |