FFCP PHASE1:Hg19::chr2:224845086..224845116,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:224845086..224845116,- to FFCP PHASE1:Hg19::chr2:224845086..224845116,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:224845086..224845116,- | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_at_chr2:224845086..224845116,- | |||
|id=chr2:224845086..224845116,- | |||
|ontology_enrichment_celltype=CL:0000055!4.93e-14!180;CL:0000057!2.57e-13!75;CL:0002620!4.49e-11!23 | |||
|ontology_enrichment_celltype_v019=CL:0002541;6.41e-12;3!CL:0002579;7.02e-12;3!CL:0000153;4.99e-10;9!CL:0000447;4.99e-10;9!CL:0000499;5.37e-09;28!CL:1000306;1.19e-08;4!CL:0002547;1.19e-08;4!CL:0000056;2.98e-08;4!CL:0000327;3.03e-08;15!CL:0002334;1.87e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,5.40e-12,3;CL:0002579,1.43e-11,3;CL:0000057,1.04e-10,76;CL:0000153,4.98e-10,9;CL:0000447,4.98e-10,9;CL:0000499,6.06e-09,28;CL:1000306,1.62e-08,4;CL:0002547,1.62e-08,4;CL:0000515,1.75e-08,4;CL:0000327,3.07e-08,15;CL:0002334,1.96e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000515;2.98e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.10e-11;3!DOID:127;3.10e-11;3!DOID:0060072;1.57e-08;4!DOID:1909;8.58e-08;2!DOID:17;7.26e-07;5!DOID:450;7.26e-07;5!DOID:66;7.26e-07;5!DOID:423;7.26e-07;5!DOID:0080000;7.26e-07;5!DOID:11722;7.26e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.20e-11,3;DOID:127,2.20e-11,3;DOID:0060072,1.22e-08,4;DOID:1909,1.35e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002097!7.02e-12!40;UBERON:0002199!1.19e-09!45;UBERON:0002416!1.19e-09!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;6.41e-12;3!UBERON:0000920;6.41e-12;3!UBERON:0004457;4.58e-10;9!UBERON:0000042;4.58e-10;9!UBERON:0005631;7.86e-09;10!UBERON:0000158;7.86e-09;10!UBERON:0005406;9.17e-09;2!UBERON:0004797;1.19e-08;4!UBERON:0000415;1.19e-08;4!UBERON:0007240;1.19e-08;4!UBERON:0005742;1.19e-08;4!UBERON:0005734;1.19e-08;4!UBERON:0004664;1.19e-08;4!UBERON:0004663;1.19e-08;4!UBERON:0002097;9.70e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,5.40e-12,3;UBERON:0004923,5.81e-10,66;UBERON:0005406,8.90e-09,2;UBERON:0000415,1.62e-08,4;UBERON:0007240,1.62e-08,4;UBERON:0005742,1.62e-08,4;UBERON:0005734,1.62e-08,4;UBERON:0004664,1.62e-08,4;UBERON:0004663,1.62e-08,4;UBERON:0002097,8.99e-08,41;UBERON:0004457,2.65e-07,12;UBERON:0000042,2.65e-07,12 | |||
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| ||
|short_description=p@chr2:224845086..224845116,- | |||
}} | }} |
Latest revision as of 07:10, 29 July 2015
Short description: | p@chr2:224845086..224845116, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224845086..224845116, - |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 5.40e-12 | 3 |
omentum preadipocyte | 1.43e-11 | 3 |
fibroblast | 1.04e-10 | 76 |
GAG secreting cell | 4.98e-10 | 9 |
carbohydrate secreting cell | 4.98e-10 | 9 |
stromal cell | 6.06e-09 | 28 |
fibroblast of tunica adventitia of artery | 1.62e-08 | 4 |
fibroblast of the aortic adventitia | 1.62e-08 | 4 |
skeletal muscle myoblast | 1.75e-08 | 4 |
extracellular matrix secreting cell | 3.07e-08 | 15 |
preadipocyte | 1.96e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 5.40e-12 | 3 |
organ component layer | 5.81e-10 | 66 |
perirenal fat | 8.90e-09 | 2 |
artery wall | 1.62e-08 | 4 |
tunica adventitia of artery | 1.62e-08 | 4 |
adventitia | 1.62e-08 | 4 |
tunica adventitia of blood vessel | 1.62e-08 | 4 |
aorta tunica adventitia | 1.62e-08 | 4 |
aorta wall | 1.62e-08 | 4 |
skin of body | 8.99e-08 | 41 |
cavity lining | 2.65e-07 | 12 |
serous membrane | 2.65e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.20e-11 | 3 |
leiomyoma | 2.20e-11 | 3 |
benign neoplasm | 1.22e-08 | 4 |
melanoma | 1.35e-07 | 2 |