FFCP PHASE1:Hg19::chr2:73340160..73340185,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:73340160..73340185,- to FFCP PHASE1:Hg19::chr2:73340160..73340185,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26056 | |EntrezGene=26056 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24845 | |HGNC=24845 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BXF6,Q9UFM0 | |UniProt=Q9BXF6,Q9UFM0 | ||
|association_with_transcript=-14bp_to_ENST00000258098,NM_015470,uc002siu.3_5end | |||
|cluster_id=chr2:73340160..73340185,- | |||
|description=CAGE_peak_5_at_RAB11FIP5_5end | |||
|id=chr2:73340160..73340185,- | |||
|ontology_enrichment_celltype=CL:0000222!3.70e-11!119;CL:0000055!1.74e-08!180;CL:0000213!9.41e-08!57;CL:0000215!9.41e-08!57;CL:0000220!3.96e-07!246;CL:0002321!5.30e-07!248;CL:0002139!6.49e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.95e-13;24!CL:0000071;2.69e-11;18!CL:0000115;2.23e-09;36!CL:1000413;3.93e-08;9!CL:0002544;2.53e-07;6!CL:0002144;5.15e-07;3!CL:0002567;9.83e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.32e-13,24;CL:0000071,2.21e-11,18;CL:0002546,2.21e-11,18;CL:0000115,1.66e-10,36;CL:1000413,2.87e-08,9;CL:0002078,4.96e-08,45;CL:0000222,8.33e-08,121;CL:0002544,2.34e-07,6;CL:0002144,6.01e-07,3;CL:0002567,7.38e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;2.69e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!2.48e-10!241;UBERON:0000025!3.76e-10!194;UBERON:0000055!9.16e-09!69;UBERON:0000477!9.73e-09!286;UBERON:0000119!3.15e-08!312;UBERON:0000483!3.15e-08!309;UBERON:0004872!7.03e-08!84;UBERON:0002049!1.20e-07!79;UBERON:0007798!1.20e-07!79;UBERON:0001981!2.52e-07!60;UBERON:0007500!2.52e-07!60;UBERON:0004537!2.52e-07!60;UBERON:0006965!2.52e-07!60;UBERON:0000475!4.33e-07!365;UBERON:0001049!6.22e-07!57;UBERON:0005068!6.22e-07!57;UBERON:0006241!6.22e-07!57;UBERON:0007135!6.22e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.69e-11;18!UBERON:0001986;2.69e-11;18!UBERON:0004852;2.69e-11;18!UBERON:0000487;4.58e-09;22!UBERON:0003915;3.93e-08;9!UBERON:0004700;3.93e-08;9!UBERON:0001917;3.93e-08;9!UBERON:0006914;7.31e-08;25!UBERON:0010523;5.15e-07;3!UBERON:0001915;5.15e-07;3!UBERON:0001982;5.15e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.21e-11,18;UBERON:0001986,2.21e-11,18;UBERON:0004852,2.21e-11,18;UBERON:0000487,3.90e-09,22;UBERON:0004872,1.01e-08,83;UBERON:0000055,2.60e-08,68;UBERON:0003915,2.87e-08,9;UBERON:0004700,2.87e-08,9;UBERON:0001917,2.87e-08,9;UBERON:0006914,6.37e-08,25;UBERON:0004535,6.98e-08,109;UBERON:0001009,1.42e-07,112;UBERON:0007500,5.43e-07,59;UBERON:0001981,5.43e-07,59;UBERON:0004537,5.43e-07,59;UBERON:0006965,5.43e-07,59;UBERON:0010523,6.01e-07,3;UBERON:0001915,6.01e-07,3;UBERON:0001982,6.01e-07,3;UBERON:0002049,6.55e-07,78;UBERON:0007798,6.55e-07,78 | |||
|phase1_expression=0,0.428201047781966,0.422863212287913,0,0.446961094427288,0,0,0.631719873426831,0,0,0,0.436882744260345,0,0.123766352960047,0.331397375727916,0,0,0.730310090387373,0.487932798790507,0.369363174230364,0.816002764977012,0.313454721478088,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0,0,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0,0,0,0,0,0.445641827540694,0,0,0.812411591295047,0.25618263945135,0.520237390239513,0,0,0,0.14828656316206,0,0,0.113309342697566,0.383220493601921,0,0,0,0,0,0,0.255973222308837,0,0.236777252044017,0,0.403213486449465,1.06976078313403,0.579297615531196,2.43806866313962,0,0.255725123687061,0.722878304769133,0.50133791063589,0.144846518960824,0,0,0.0945348171640679,0.665188192387692,0.175669571386252,0.982343066232845,0,0.370784442784429,0,0,0,0,0,0,0.596287222100115,0,1.73570250803797,4.52246353539208,0.838998872419812,0.275118041940067,1.67195973229448,1.29208379584664,0.35576626268671,0.33472061276467,2.01414658554573,0,1.22031028774085,1.10298924103761,0,0.803697554556718,0.898117490504679,0.337834441449967,0,0,1.28241220751285,0,0,0,0,0.633152558322899,0.397227542439656,0.286836620748814,0.354668382198357,1.12135520028461,0,0.74000264525148,0,0.538842688278752,0,0.302714855289863,0,0,0.312160076830321,0,0.448346041655403,0,0.161872944368132,0.280901613404497,0.61246251376468,0,0.309977343527296,0,0.494533858557114,0.910161361938026,0,0.168336113954066,0.125118519871964,0,0,0.30648779579902,0.150238058906597,0.113432183160021,0.179389635688862,0.427114777637135,0,0.900273288253207,0,0.515281080091258,0.744467425326359,0.337552664482532,0.292311015483596,1.26216887122057,0.644349290496095,0.323292113637624,0,0.403008392910561,0.169560592310488,0.773043412653187,0.272746120590835,1.14721838155602,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0.134831308160164,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0.658501712451753,1.1240175325762,0,0.0925884451585296,0,0,0,0.115930404975077,0.234817388471643,0.288732895522148,0.462985512576611,1.52203321787679,0,0,0,0.234004265139238,0,0.93733833986777,0.335964256397719,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.190493682876507,0.763976851116555,1.17217447210047,1.71072446022705,0.102827492703324,0.300343057843917,0,0.336393253036082,0,0.07333828582095,0.258543431515556,3.57656445851882,0,0.531876233169741,1.04007436911366,0.514414748524284,0,0.532844358032199,0.142977993658148,0,0,0,0,0,0.904318131178758,0.871533458600294,0.699810938274399,0,0,0,0.718874566474748,1.14861935834114,2.85273810081437,0.289562613335158,0.61642896765115,0.179060963239896,0,0.394061520403854,0.646882724578552,0.256686072559497,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.49076596687656,0,0.271265023699736,0.415941723061614,0.356857977594324,0,0,0.300946099727719,0,0,1.32845119707087,0.737476674166813,0,0.979005787313703,1.02943027143257,0,0,0.640365346820666,0.606255142892519,0,0,0.744323423456331,0.460385919864187,0.280660094433074,0.384417447767103,0,0.321707842287215,0,0,0.355123450626254,0.164254312027618,0,0.232420756919918,0.120859449591622,0,0.0920809889358963,0.229628896329213,0,0.131124414959424,0.451199612907412,0.231046011313244,0.784349769176855,2.92278449306521,0,1.13733384070897,0.850468526382578,0.215915916102139,0,0,0.501689773854853,0.764628819135115,0,0.223874754722178,0,0,0,0,2.27764876265012,0.515205058238611,0.183138929636687,0.742585499285292,0,0,0,0.48335359146061,0.154048617114644,0.15350367472613,0.413509717453592,0.322260734604821,0.145016693914229,0.0852266274161009,0.267096106940212,0.330569830721956,0.384380134730212,0,0.10115778085555,0,0.62962469366128,0.6970372701606,0.308033580176089,0.532306030317022,1.73986598415015,0.18532421910392,0.143124886741991,0,0,0.190630193923825,1.02359116524534,0,0,0,0,0,0.117812402345686,1.2130948894399,0,0.421258456238981,0,0.487426979262569,2.11300293513511,0.136499911407986,0.141405431953713,0,1.10273068709225,0,0.438450885253763,1.73632660280006,0.655894752046633,0.405820753925408,0.30982349809975,0.845086807596724,0,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,1.01489521846434,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333698283423817,0,0,0,0,0.33307196799782,0,0,0,0,0.445773537109913,0.852408440419239,0,0,0,0,0.140669416410513,0.111308705022906,1.31843099381408,0,0.597743964753209,0,0,0.409074730008619,0,0.622079175323615,0.0898683511473268,0.179021174675609,0,0,0,0,0.969332746095218,0.463840490809256,0,0.260427761085233,0,0,0,0,0.236387681767936,0,0,0,0.885741385813839,0.120596438625408,1.52581736317083,0.442317039724898,0.295547618953547,0.219385397153973,0.435753854075961,0.278847488557207,0.153900517007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| ||
|short_description=p5@RAB11FIP5 | |||
}} | }} |
Latest revision as of 09:11, 18 September 2015
Short description: | p5@RAB11FIP5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RAB11FIP5_5end |
Coexpression cluster: | NA |
Association with transcript: | -14bp_to_ENST00000258098, NM_015470, uc002siu.3_5end |
EntrezGene: | RAB11FIP5 |
HGNC: | 24845 |
UniProt: | Q9BXF6Q9UFM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.32e-13 | 24 |
blood vessel endothelial cell | 2.21e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.21e-11 | 18 |
endothelial cell | 1.66e-10 | 36 |
endothelial cell of artery | 2.87e-08 | 9 |
meso-epithelial cell | 4.96e-08 | 45 |
mesodermal cell | 8.33e-08 | 121 |
aortic endothelial cell | 2.34e-07 | 6 |
capillary endothelial cell | 6.01e-07 | 3 |
light melanocyte | 7.38e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.21e-11 | 18 |
endothelium | 2.21e-11 | 18 |
cardiovascular system endothelium | 2.21e-11 | 18 |
simple squamous epithelium | 3.90e-09 | 22 |
splanchnic layer of lateral plate mesoderm | 1.01e-08 | 83 |
vessel | 2.60e-08 | 68 |
endothelial tube | 2.87e-08 | 9 |
arterial system endothelium | 2.87e-08 | 9 |
endothelium of artery | 2.87e-08 | 9 |
squamous epithelium | 6.37e-08 | 25 |
cardiovascular system | 6.98e-08 | 109 |
circulatory system | 1.42e-07 | 112 |
epithelial tube open at both ends | 5.43e-07 | 59 |
blood vessel | 5.43e-07 | 59 |
blood vasculature | 5.43e-07 | 59 |
vascular cord | 5.43e-07 | 59 |
microcirculatory vessel | 6.01e-07 | 3 |
endothelium of capillary | 6.01e-07 | 3 |
capillary | 6.01e-07 | 3 |
vasculature | 6.55e-07 | 78 |
vascular system | 6.55e-07 | 78 |