FFCP PHASE1:Hg19::chr3:157824437..157824459,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:157824437..157824459,- to FFCP PHASE1:Hg19::chr3:157824437..157824459,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6474 | |EntrezGene=6474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10854 | |HGNC=10854 | ||
|TSSclassifier=strong | |||
|UniProt=O60902 | |UniProt=O60902 | ||
|association_with_transcript=-145bp_to_ENST00000389589_5end | |||
|cluster_id=chr3:157824437..157824459,- | |||
|coexpression_cluster_id=C126 | |||
|description=CAGE_peak_5_at_SHOX2_5end | |||
|id=chr3:157824437..157824459,- | |||
|ontology_enrichment_celltype=CL:0000057!6.93e-10!75;CL:0002620!1.15e-09!23;CL:0000055!4.86e-08!180 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.24e-29;2!CL:0000242;1.24e-29;2!CL:0000312;1.79e-12;5!CL:0000240;1.50e-10;6!CL:0000311;1.50e-10;6!CL:0000079;1.50e-10;6!CL:0000237;1.50e-10;6!CL:0002535;1.29e-08;2!CL:0000362;2.52e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,9.31e-30,2;CL:0000312,1.59e-12,5;CL:0000240,1.36e-10,6;CL:0000311,1.36e-10,6;CL:0000079,1.36e-10,6;CL:0000237,1.36e-10,6;CL:0000036,1.36e-10,6;CL:0000357,1.36e-10,6;CL:0000114,1.36e-10,6;CL:0002535,1.29e-08,2;CL:0000362,2.36e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0010227;2.38e-15;1!UBERON:0005425;2.38e-15;1!UBERON:0003099;2.38e-15;1!UBERON:0003852;2.38e-15;1!CL:0000357;1.50e-10;6!CL:0000114;1.50e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!2.11e-08!45;UBERON:0002416!2.11e-08!45;UBERON:0002097!6.29e-08!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.24e-29;2!UBERON:0002757;1.24e-29;2!UBERON:0010134;1.24e-29;2!UBERON:0005408;1.24e-29;2!UBERON:0001899;1.24e-29;2!UBERON:0002079;2.38e-15;1!UBERON:0000941;2.38e-15;1!UBERON:0007195;2.38e-15;1!UBERON:0005705;2.38e-15;1!UBERON:0001785;2.38e-15;1!UBERON:0002464;2.38e-15;1!UBERON:0004904;2.38e-15;1!UBERON:0008193;2.38e-15;1!UBERON:0001021;2.38e-15;1!UBERON:0010912;2.38e-15;1!UBERON:0002514;2.38e-15;1!UBERON:0003457;2.38e-15;1!UBERON:0008907;2.38e-15;1!UBERON:0008001;2.38e-15;1!UBERON:0007213;2.38e-15;1!UBERON:0009891;2.38e-15;1!UBERON:0007914;2.38e-15;1!UBERON:0007375;2.38e-15;1!UBERON:0003323;2.38e-15;1!UBERON:0010258;2.38e-15;1!UBERON:0005253;2.38e-15;1!UBERON:0007842;2.38e-15;1!UBERON:0002397;2.38e-15;1!UBERON:0003113;2.38e-15;1!UBERON:0003277;2.38e-15;1!UBERON:0001709;2.38e-15;1!UBERON:0002244;2.38e-15;1!UBERON:0005620;2.38e-15;1!UBERON:0010364;2.38e-15;1!UBERON:0004288;2.38e-15;1!UBERON:0003296;2.39e-15;4!UBERON:0010133;2.39e-15;4!UBERON:0002784;2.39e-15;4!UBERON:0001474;9.48e-13;18!UBERON:0001894;3.58e-09;7!UBERON:0004765;6.54e-09;26!UBERON:0006955;1.29e-08;2!UBERON:0004801;1.29e-08;2!UBERON:0003714;2.48e-08;2!UBERON:0005162;2.48e-08;2!UBERON:0000122;2.48e-08;2!UBERON:0002081;2.48e-08;2!UBERON:0004089;2.48e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.92e-29,2;UBERON:0002757,1.92e-29,2;UBERON:0010134,1.92e-29,2;UBERON:0005408,1.92e-29,2;UBERON:0001899,1.92e-29,2;UBERON:0002079,1.54e-15,1;UBERON:0000941,1.78e-15,1;UBERON:0001785,1.78e-15,1;UBERON:0002464,1.78e-15,1;UBERON:0004904,1.78e-15,1;UBERON:0001021,1.78e-15,1;UBERON:0003902,1.78e-15,1;UBERON:0005425,1.78e-15,1;UBERON:0005705,2.38e-15,1;UBERON:0008193,2.38e-15,1;UBERON:0010912,2.38e-15,1;UBERON:0002514,2.38e-15,1;UBERON:0003457,2.38e-15,1;UBERON:0008907,2.38e-15,1;UBERON:0008001,2.38e-15,1;UBERON:0007213,2.38e-15,1;UBERON:0009891,2.38e-15,1;UBERON:0007914,2.38e-15,1;UBERON:0009292,2.38e-15,1;UBERON:0003099,2.38e-15,1;UBERON:0007375,2.38e-15,1;UBERON:0003323,2.38e-15,1;UBERON:0010258,2.38e-15,1;UBERON:0007842,2.38e-15,1;UBERON:0009494,2.38e-15,1;UBERON:0010042,2.38e-15,1;UBERON:0010045,2.38e-15,1;UBERON:0010259,2.38e-15,1;UBERON:0010359,2.38e-15,1;UBERON:0009526,2.38e-15,1;UBERON:0002397,2.38e-15,1;UBERON:0003113,2.38e-15,1;UBERON:0003277,2.38e-15,1;UBERON:0001709,2.38e-15,1;UBERON:0004066,2.38e-15,1;UBERON:0002244,2.38e-15,1;UBERON:0005620,2.38e-15,1;UBERON:0004362,2.38e-15,1;UBERON:0010364,2.38e-15,1;UBERON:0010046,2.38e-15,1;UBERON:0005868,2.38e-15,1;UBERON:0007238,2.38e-15,1;UBERON:0004288,2.38e-15,1;UBERON:0004068,2.38e-15,1;UBERON:0010334,2.38e-15,1;UBERON:0003852,2.38e-15,1;UBERON:0010253,2.38e-15,1;UBERON:0007195,2.75e-15,1;UBERON:0003296,2.96e-15,4;UBERON:0010133,2.96e-15,4;UBERON:0002784,2.96e-15,4;UBERON:0001894,4.04e-09,7;UBERON:0006222,4.04e-09,7;UBERON:0006955,1.29e-08,2;UBERON:0004801,1.29e-08,2;UBERON:0002081,2.00e-08,2;UBERON:0010227,2.00e-08,2;UBERON:0003714,2.15e-08,2;UBERON:0005162,2.15e-08,2;UBERON:0000122,2.15e-08,2;UBERON:0005253,2.48e-08,2;UBERON:0004089,2.48e-08,2 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0,0,0,0,0.622422070799533,0.269421344139376,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0.408308342509787,0,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0,0.358779271377724,0.213557388818567,0,0.600182192168805,0.309157587715317,0.772921620136887,0.37223371266318,0,0.292311015483596,0,0.184099797284599,0.484938170456436,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0.355123450626254,0.0821271560138091,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00726411300178,0.41254749960294,0,0,0,0,0,0,0,0.644521469209642,0.290033387828457,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0.912938716132769,0.156679895773023,0,0,0,0,0,0,0.307240764308458,0,1.00109485027145,0,0.278406173895242,0,0.270455678475983,0,0,0,0.293016358543788,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,10.5811754098796,0.20453736500431,0,0.311039587661807,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0.724999575434793,0,0,0,2.41320361269025,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0.335643173951685,0.189753732724185,0,0,0,0,0,0,0,0,0.296521128680622,0.617819694732514,0.626531697032732,0.067401132980677,0.802577647298789,0.468528891450678,0,0,0.242780379534093,0,0,0,0,0,0.311064574191741,0.664653872707185,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0.353024506766001,0.225980740780532,0,0.19871461170299,0,0,0,0,0.19980960958213,0,0,27.7983896536383,0,0.372757606696298,0,0,0.104602846312333,0.203996435272644,0.288950589901519,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0,0,0.223171457441873,0.134366944973453,0,0,0,0,0,0.78741985211799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383830394638891,1.42939065274673,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0.517131825446202,0.26446520348538,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0.968440444553616,0,0,0,0,2.34167452903441,2.8984205722165,0,0,0,0.189403005275089,0.50313580350515,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0.39997479170986,0,0,0,0,0,0,0,0.215649622793364,0,0.327628914576042,0.169732529954025,0.425149840203366,0,0,0,0.867479195013787,0,1.41070377476274,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0.795664888465099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14280734351315,2.01770233331294,0.606965604236632,0,0,0.115233987555779,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0.173858272302579,0,0,0,0,0,0.118332000730565,0.511280428554946,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.631086248772738,0,0,0,0,0.462175628631418,0.432626562123789,0,0,0.253397002022874,0,0,0.0918948995348449,0,0.151557396436479,0.535928260312357,0.829169439458779,0,0,0.23806443146374,0,0,0,0.12729431655633,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0,0,0,0,0.622422070799533,0.269421344139376,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0.408308342509787,0,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0,0.358779271377724,0.213557388818567,0,0.600182192168805,0.309157587715317,0.772921620136887,0.37223371266318,0,0.292311015483596,0,0.184099797284599,0.484938170456436,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.315404830067869,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0.355123450626254,0.0821271560138091,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00726411300178,0.41254749960294,0,0,0,0,0,0,0,0.644521469209642,0.290033387828457,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0.912938716132769,0.156679895773023,0,0,0,0,0,0,0.307240764308458,0,1.00109485027145,0,0.278406173895242,0,0.270455678475983,0,0,0,0.293016358543788,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,10.5811754098796,0.20453736500431,0,0.311039587661807,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0.724999575434793,0,0,0,2.41320361269025,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0.335643173951685,0.189753732724185,0,0,0,0,0,0,0,0,0.296521128680622,0.617819694732514,0.626531697032732,0.067401132980677,0.802577647298789,0.468528891450678,0,0,0.242780379534093,0,0,0,0,0,0.311064574191741,0.664653872707185,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0.353024506766001,0.225980740780532,0,0.19871461170299,0,0,0,0,0.19980960958213,0,0,27.7983896536383,0,0.372757606696298,0,0,0.104602846312333,0.203996435272644,0.288950589901519,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0,0,0.223171457441873,0.134366944973453,0,0,0,0,0,0.78741985211799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383830394638891,1.42939065274673,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0.517131825446202,0.26446520348538,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0.968440444553616,0,0,0,0,2.34167452903441,2.8984205722165,0,0,0,0.189403005275089,0.50313580350515,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0.39997479170986,0,0,0,0,0,0,0,0.215649622793364,0,0.327628914576042,0.169732529954025,0.425149840203366,0,0,0,0.867479195013787,0,1.41070377476274,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0.795664888465099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14280734351315,2.01770233331294,0.606965604236632,0,0,0.115233987555779,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0.173858272302579,0,0,0,0,0,0.118332000730565,0.511280428554946,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.631086248772738,0,0,0,0,0.462175628631418,0.432626562123789,0,0,0.253397002022874,0,0,0.0918948995348449,0,0.151557396436479,0.535928260312357,0.829169439458779,0,0,0.23806443146374,0,0,0,0.12729431655633,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p5@SHOX2 | |||
}} | }} |
Latest revision as of 08:18, 16 September 2015
Short description: | p5@SHOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SHOX2_5end |
Coexpression cluster: | C126_gastrointestinal_argyrophil_smallcell_merkel_bile_insula_brain |
Association with transcript: | -145bp_to_ENST00000389589_5end |
EntrezGene: | SHOX2 |
HGNC: | 10854 |
UniProt: | O60902 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 9.31e-30 | 2 |
keratinocyte | 1.59e-12 | 5 |
stratified squamous epithelial cell | 1.36e-10 | 6 |
keratin accumulating cell | 1.36e-10 | 6 |
stratified epithelial cell | 1.36e-10 | 6 |
keratinizing barrier epithelial cell | 1.36e-10 | 6 |
epithelial fate stem cell | 1.36e-10 | 6 |
stratified epithelial stem cell | 1.36e-10 | 6 |
surface ectodermal cell | 1.36e-10 | 6 |
epithelial cell of cervix | 1.29e-08 | 2 |
epidermal cell | 2.36e-07 | 9 |