FFCP PHASE1:Hg19::chr4:77659857..77659874,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:77659857..77659874,+ to FFCP PHASE1:Hg19::chr4:77659857..77659874,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57619 | |EntrezGene=57619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=30422 | |HGNC=30422 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003hkg.2_5end | |||
|cluster_id=chr4:77659857..77659874,+ | |||
|coexpression_cluster_id=C1324 | |||
|description=CAGE_peak_3_at_SHROOM3_5end | |||
|id=chr4:77659857..77659874,+ | |||
|ontology_enrichment_celltype=CL:0000057!3.06e-24!75;CL:0000055!1.38e-20!180;CL:0002620!8.10e-16!23;CL:0002334!1.48e-08!12;CL:0000192!2.11e-07!42;CL:0000514!2.11e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.16e-17;23!CL:0000057;4.69e-10;73!CL:0002559;3.00e-08;5!CL:0002334;1.38e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.30e-21,76;CL:0002620,1.37e-17,23;CL:0002559,3.06e-08,5;CL:0002334,1.12e-07,12;CL:0000136,4.95e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!5.27e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;4.22e-09;5!DOID:450;4.22e-09;5!DOID:66;4.22e-09;5!DOID:423;4.22e-09;5!DOID:0080000;4.22e-09;5!DOID:11722;4.22e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.21e-09,5;DOID:450,4.21e-09,5;DOID:66,4.21e-09,5;DOID:423,4.21e-09,5;DOID:0080000,4.21e-09,5;DOID:11722,4.21e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!1.36e-12!45;UBERON:0002416!1.36e-12!45;UBERON:0002097!3.35e-12!40;UBERON:0003102!5.30e-12!95;UBERON:0000914!5.57e-10!83;UBERON:0002329!5.57e-10!83;UBERON:0003077!5.57e-10!83;UBERON:0003059!5.57e-10!83;UBERON:0007282!5.57e-10!83;UBERON:0009618!5.57e-10!83;UBERON:0007285!5.57e-10!83;UBERON:0004290!3.91e-09!70;UBERON:0002100!8.57e-08!216;UBERON:0000486!2.62e-07!82;UBERON:0004923!3.81e-07!57;UBERON:0004457!5.82e-07!12;UBERON:0000042!5.82e-07!12;UBERON:0000475!9.60e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.16e-13;41!UBERON:0002199;8.90e-11;46!UBERON:0002416;8.90e-11;46!UBERON:0004457;1.13e-09;9!UBERON:0000042;1.13e-09;9!UBERON:0003688;2.50e-09;6!UBERON:0002358;2.50e-09;6!UBERON:0003684;2.50e-09;6!UBERON:0001178;2.50e-09;6!UBERON:0003102;4.11e-09;50!UBERON:0002073;3.00e-08;5!UBERON:0000160;3.09e-08;17!UBERON:0002384;3.60e-07;198!UBERON:0001155;6.15e-07;9!UBERON:0000059;6.53e-07;11!UBERON:0005409;6.76e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.84e-17,41;UBERON:0002199,6.15e-16,46;UBERON:0002416,6.15e-16,46;UBERON:0004457,1.98e-10,12;UBERON:0000042,1.98e-10,12;UBERON:0003102,1.37e-09,99;UBERON:0003688,2.34e-09,6;UBERON:0002358,2.34e-09,6;UBERON:0003684,2.34e-09,6;UBERON:0001178,2.34e-09,6;UBERON:0000160,2.73e-08,17;UBERON:0002073,3.06e-08,5;UBERON:0005086,3.06e-08,5;UBERON:0005409,6.40e-08,25;UBERON:0000059,4.84e-07,11;UBERON:0001155,5.20e-07,9 | |||
|phase1_expression=3.81524596468169,5.1384125733836,7.47058341708647,5.00366491765652,4.46961094427288,4.36169262050184,12.6649939084155,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0.672325146451775,1.20538905604795,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0.722878304769133,4.01070328508712,2.17269778441236,0,0.486634870302636,0,0,0,1.57174890597255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9152146474689,0.12663051166458,2.51577443545116,0.286836620748814,0,1.12135520028461,1.06748995729705,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,0.936480230490962,1.1409436430889,4.33401173600223,0.117434498643765,0.323745888736263,0.561803226808994,2.04154171254893,0,0.619954687054593,3.56400857184616,4.94533858557114,0.910161361938026,0,0.336672227908132,0.250237039743928,0.831192346452549,6.14568669233173,20.2281945227353,3.00476117813194,0.226864366320042,75.5230366250109,13.4541154955697,20.3454625113179,45.0136644126603,20.9196634354031,86.0519403752401,29.964813869386,71.0548358735731,47.7441325289873,90.6237249536371,32.1254146261625,2.42469085228218,121.413280640682,50.980561703186,38.8293756391017,0,0,0,0,0,0,0,0,0,7.8224766164908,7.71889125831462,8.28809528114883,6.03678306441573,7.21879481669586,0,0,0.241011029883482,0,0,0.237270619111097,0,0,0,0,7.01208869017229,2.4694440679884,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571481048629521,0,0,0,0.308482478109971,0,0,0,0,0,0.904902010304444,0,0,22.0728636765443,6.24044621468197,0,0,0,2.43062589218851,0,0,0.65147236858747,1.42156779497018,0,0.301439377059586,3.48613383440118,3.09916272664377,0,0,0,0.718874566474748,0,0,0.289562613335158,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,6.44709670745502,4.28229573113188,1.41932173530541,0.585707074963566,0,0,0,0,4.60922921354258,17.2898392791485,0.195801157462741,0.343143423810856,0,0,0,0,0,0.30239029332968,22.8259183193275,83.0229275488418,44.3442949204256,3.84417447767103,31.2141421930689,9.97294311090366,11.8734453155993,0.462629081407967,0.710246901252508,0.98552587216571,0,1.85936605535935,0,0,0,0.34444334449382,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0.082509499920588,5.16838984196555,0,0,0.096670718292122,0,0,0.413509717453592,0,0,0,0,0,0,0,0,0.464845549297286,7.24068397710472,0,0,0,0.869932992075073,0.37064843820784,0.858749320451947,0,1.58189712359363,3.24071329670502,8.70052490458535,0.42793898803392,0,0,6.65528093058265,4.11805544604082,2.47406044925942,0.202182481573316,0,0,1.95053495635836,0.243713489631284,0,0.136499911407986,0.424216295861138,1.13008116620243,0,0.66343897524122,0,1.15755106853338,1.9676842561399,1.21746226177622,1.54911749049875,0,1.00387946542836,0.687743287091848,1.78335525740625,0,1.68886108238131,2.63435914367922,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0,0,0,0,0,0,3.98495976502139,1.93398740871803,0.251932747854276,0,0,26.4383649512536,0,0,0,7.59554223404389,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,1.15425387755696,0,0,0,0,0,6.3202339447285,0,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,2.38835424159016,4.27721101453538,0,0.123563938946503,0,0,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,5.41652671550293,0,0,0,0,6.11030803877042,0,0.451961481561065,0,0,0,0,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0.209205692624666,0,1.44475294950759,0.600420288709789,0.136905378891993,0,2.57859264851974,0,0.279282401272254,0.458320848023367,2.87149209830726,0.599037001496973,0.429226048136571,0.669514372325618,0.671834724867263,19.8164935948322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02447419488958,0.524545881349981,0,0,0,1.42939065274673,0,0,0,0.864221491201268,0.653174720218818,0,0,0.511164065356265,0.113312091520126,0,0,3.36135686540031,0,0,0,0.640724475406168,4.08731193259131,0.828478110694391,0.496166021811951,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0.573409195690071,0,0.496771223531068,0,0,0,0,0.470531639396343,0,0,0,1.63599316893057,0,0,0.50313580350515,3.55924488638614,0,1.05861646634267,0,0,0.318593534327405,0,0.621051827505038,1.24411862352257,1.59505028734797,9.39141111261121,4.20721305192212,2.28483127301277,0.406870733204662,5.27361111687422,1.18151612746737,5.10437135866343,29.8571916523962,0,22.6641165420643,25.9297106349758,0,0,0,0,0.906823702049089,0,0,0,0.617602894321944,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.77006525980128,0,0,0.352675943690684,3.9811912055916,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,3.05105676373734,0,0.397832444232549,3.45967510406583,1.21023041222112,0,0,0,0,0,0,0,0.0634158101939068,0,0,8.435590032618,0.175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| ||
|short_description=p3@SHROOM3 | |||
}} | }} |
Latest revision as of 18:21, 18 September 2015
Short description: | p3@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHROOM3_5end |
Coexpression cluster: | C1324_Fibroblast_Preadipocyte_basal_migratory_mesenchymal_Smooth_spindle |
Association with transcript: | 0bp_to_uc003hkg.2_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.30e-21 | 76 |
skin fibroblast | 1.37e-17 | 23 |
hair follicle cell | 3.06e-08 | 5 |
preadipocyte | 1.12e-07 | 12 |
fat cell | 4.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.84e-17 | 41 |
integument | 6.15e-16 | 46 |
integumental system | 6.15e-16 | 46 |
cavity lining | 1.98e-10 | 12 |
serous membrane | 1.98e-10 | 12 |
surface structure | 1.37e-09 | 99 |
omentum | 2.34e-09 | 6 |
peritoneum | 2.34e-09 | 6 |
abdominal cavity | 2.34e-09 | 6 |
visceral peritoneum | 2.34e-09 | 6 |
intestine | 2.73e-08 | 17 |
hair follicle | 3.06e-08 | 5 |
hair follicle placode | 3.06e-08 | 5 |
gastrointestinal system | 6.40e-08 | 25 |
large intestine | 4.84e-07 | 11 |
colon | 5.20e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.21e-09 | 5 |
myotonic disease | 4.21e-09 | 5 |
muscle tissue disease | 4.21e-09 | 5 |
myopathy | 4.21e-09 | 5 |
muscular disease | 4.21e-09 | 5 |
myotonic dystrophy | 4.21e-09 | 5 |