FFCP PHASE1:Hg19::chr5:125758865..125758876,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:125758865..125758876,+ to FFCP PHASE1:Hg19::chr5:125758865..125758876,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=65983 | |EntrezGene=65983 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |HGNC=24911 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z3R1,B7Z1F2,Q96HH9 | |UniProt=B7Z3R1,B7Z1F2,Q96HH9 | ||
|association_with_transcript=0bp_to_ENST00000542322,ENST00000544396,NM_001146320,NM_001146321,NM_023927,uc003ktu.2,uc011cwv.1,uc011cww.1,uc011cwx.1_5end | |||
|cluster_id=chr5:125758865..125758876,+ | |||
|description=CAGE_peak_14_at_GRAMD3_5end | |||
|id=chr5:125758865..125758876,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002580;1.25e-19;3!CL:0002617;1.76e-13;2!CL:0002334;8.79e-13;12!CL:0000197;7.03e-10;6!CL:0000098;7.03e-10;6!CL:0002167;7.03e-10;6!CL:0002615;5.27e-09;3!CL:0002579;5.27e-09;3!CL:0000136;1.01e-07;13!CL:0000222;2.27e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,6.14e-20,3;CL:0002617,2.81e-13,2;CL:0002334,6.01e-13,12;CL:0000197,4.34e-10,6;CL:0000098,4.34e-10,6;CL:0002167,4.34e-10,6;CL:0002579,4.50e-09,3;CL:0002615,6.74e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.27e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4235;2.27e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,2.66e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!8.62e-10!57;UBERON:0005068!8.62e-10!57;UBERON:0006241!8.62e-10!57;UBERON:0007135!8.62e-10!57;UBERON:0007023!4.93e-09!115;UBERON:0002616!5.87e-09!59;UBERON:0003080!2.38e-08!42;UBERON:0002780!7.78e-08!41;UBERON:0001890!7.78e-08!41;UBERON:0006240!7.78e-08!41;UBERON:0001893!5.02e-07!34;UBERON:0000955!7.84e-07!69;UBERON:0006238!7.84e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.57e-16;6!UBERON:0002358;2.57e-16;6!UBERON:0003684;2.57e-16;6!UBERON:0001178;2.57e-16;6!UBERON:0000310;1.39e-15;10!UBERON:0001443;3.80e-14;11!UBERON:0004457;6.20e-11;9!UBERON:0000042;6.20e-11;9!UBERON:0000941;2.27e-07;1!UBERON:0001785;2.27e-07;1!UBERON:0002464;2.27e-07;1!UBERON:0004904;2.27e-07;1!UBERON:0001021;2.27e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.81e-16,6;UBERON:0002358,2.81e-16,6;UBERON:0003684,2.81e-16,6;UBERON:0001178,2.81e-16,6;UBERON:0000310,1.24e-15,10;UBERON:0001443,3.42e-14,11;UBERON:0004457,3.27e-08,12;UBERON:0000042,3.27e-08,12;UBERON:0000941,2.07e-07,1;UBERON:0001785,2.07e-07,1;UBERON:0002464,2.07e-07,1;UBERON:0004904,2.07e-07,1;UBERON:0001021,2.07e-07,1;UBERON:0003902,2.07e-07,1;UBERON:0005425,2.07e-07,1 | |||
|phase1_expression=2.18014055124668,1.07050261945492,1.69145284915165,1.0007329835313,0.893922188854576,0,0,0,0.522371256399677,0,0,0,0,0,0,0,1.20538905604795,0,0.487932798790507,0,0,0,0,0,0,0.0764134057479513,0,0,0.393364276848904,0.767658796194425,0.464448369948228,0.919421224478927,0,0,0,0,0,1.10799081706375,1.00272223735071,0.868043482863407,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0.344745680736619,0,0,0.564727018627814,0,0.224723484445085,0.612167784741805,0.320929027076094,0,0,0.199463657621632,0,1.16083695451434,1.70215567407342,0.622822248995575,0,0,0.217188844705117,0,0.736555271975129,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983548850569165,1.57204305099666,0.616804496998528,2.00623794468814,0.651844533267181,2.36723902867367,0,0.891283655081389,0.589211814949674,0.664601683750863,0.812411591295047,0.384273959177026,0.910415432919148,0.328875809207352,0.276350017785848,0,0.296573126324121,0,0,0,0.383220493601921,0,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0.383959833463255,0,0,0,1.00803371612366,1.06976078313403,1.01377082717959,0,0,0,0,0.50133791063589,0.144846518960824,0.795285947051099,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.0654895377488563,0,0,0,0,0,0.715471872916026,0,0.371457501329565,0,0,0,0.56530794192401,0,0,0,0,0,0.33472061276467,0.805658634218294,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0.25326102332916,0.264818361626438,0.286836620748814,0,0,0,0.49333509683432,0,0,0,0,0,0,0.312160076830321,0,0.448346041655403,0.23486899728753,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0.438977620880838,0.30648779579902,0.300476117813194,0.340296549480063,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0.206105058476878,0.515281080091258,0.930584281657949,0.337552664482532,0.584622030967192,0.252433774244115,0.0920498986422993,0.323292113637624,0,0,0.169560592310488,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,2.3218396401599,0.721879481669586,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.577465791044295,0,0.570762456703795,0,0,0,0,0.148631162288728,0,0,0.283550194484773,0.447792613514241,0,0.383382679165211,0.492663237895943,0.176096868026452,0,0,0,0.063497894292169,0.381988425558278,0,1.71072446022705,0.411309970813294,0,0.285826432630578,0,0,0.1466765716419,0,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0.579125226670317,0.61642896765115,0,0,1.18218456121156,0.862510299438069,0.77005821767849,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.831883446123229,1.60586089917446,1.73472656537328,5.85707074963566,0.601892199455438,0,0,0,0.184369168541703,0.173767228936166,0.195801157462741,0,1.44737618286021,0.862856803274467,0.960548020230999,0,0,0,1.73675465473144,3.06923946576125,2.24528075546459,0.896974044789907,1.02341449813341,1.93024705372329,0,0.154209693802656,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0,0.231046011313244,0,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0,0,0.145016693914229,0,0.534192213880424,0,0,1.53135254993501,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0.571890581771475,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.487426979262569,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0.633322905892992,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.447352215784832,0.333698283423817,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0.984685914873589,0.445234820091624,0,0,0.19924798825107,0.276283915531148,0,0,0,0.622079175323615,0.0898683511473268,0,0.511572370226872,0,0,0,0,0.74214478529481,0,0,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.331737779793674,0,0,0,0,0.230850775511391,0.683652335082007,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0.494255755786011,0,0.876214728748802,0,0,0,0,0.242780379534093,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0.173559738335131,0,0.261177619741208,0.17472666824203,0.51595809741485,0,0.292357268344742,0.0821154570532092,0.193978032976839,0,0,0.137041924646751,0,0.253243183823515,0.195551382734803,0.240476460754601,0,0,0,0,0,0.14405479798815,0,0,0,0,0.101998217636322,0,0.600420288709789,0.684526894459965,0,0,0,0.279282401272254,0,0,0.199679000498991,0.858452096273142,0.223171457441873,0.0671834724867263,0.360299883542404,0,0,0,0,0,0.169346664131569,0.795229689809303,0.544813624446302,0,0,0,0.2249738915515,0,0.485996453264197,0,0.0788057072991982,0.262272940674991,0.316801009558219,0,0.191915197319445,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0.170388021785422,0.113312091520126,0,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.500763722825999,1.72022758707021,0.55464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| |phase1_expression=2.18014055124668,1.07050261945492,1.69145284915165,1.0007329835313,0.893922188854576,0,0,0,0.522371256399677,0,0,0,0,0,0,0,1.20538905604795,0,0.487932798790507,0,0,0,0,0,0,0.0764134057479513,0,0,0.393364276848904,0.767658796194425,0.464448369948228,0.919421224478927,0,0,0,0,0,1.10799081706375,1.00272223735071,0.868043482863407,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0.344745680736619,0,0,0.564727018627814,0,0.224723484445085,0.612167784741805,0.320929027076094,0,0,0.199463657621632,0,1.16083695451434,1.70215567407342,0.622822248995575,0,0,0.217188844705117,0,0.736555271975129,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983548850569165,1.57204305099666,0.616804496998528,2.00623794468814,0.651844533267181,2.36723902867367,0,0.891283655081389,0.589211814949674,0.664601683750863,0.812411591295047,0.384273959177026,0.910415432919148,0.328875809207352,0.276350017785848,0,0.296573126324121,0,0,0,0.383220493601921,0,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0.383959833463255,0,0,0,1.00803371612366,1.06976078313403,1.01377082717959,0,0,0,0,0.50133791063589,0.144846518960824,0.795285947051099,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.0654895377488563,0,0,0,0,0,0.715471872916026,0,0.371457501329565,0,0,0,0.56530794192401,0,0,0,0,0,0.33472061276467,0.805658634218294,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0.25326102332916,0.264818361626438,0.286836620748814,0,0,0,0.49333509683432,0,0,0,0,0,0,0.312160076830321,0,0.448346041655403,0.23486899728753,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0.438977620880838,0.30648779579902,0.300476117813194,0.340296549480063,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0.206105058476878,0.515281080091258,0.930584281657949,0.337552664482532,0.584622030967192,0.252433774244115,0.0920498986422993,0.323292113637624,0,0,0.169560592310488,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,2.3218396401599,0.721879481669586,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.577465791044295,0,0.570762456703795,0,0,0,0,0.148631162288728,0,0,0.283550194484773,0.447792613514241,0,0.383382679165211,0.492663237895943,0.176096868026452,0,0,0,0.063497894292169,0.381988425558278,0,1.71072446022705,0.411309970813294,0,0.285826432630578,0,0,0.1466765716419,0,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0.579125226670317,0.61642896765115,0,0,1.18218456121156,0.862510299438069,0.77005821767849,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.831883446123229,1.60586089917446,1.73472656537328,5.85707074963566,0.601892199455438,0,0,0,0.184369168541703,0.173767228936166,0.195801157462741,0,1.44737618286021,0.862856803274467,0.960548020230999,0,0,0,1.73675465473144,3.06923946576125,2.24528075546459,0.896974044789907,1.02341449813341,1.93024705372329,0,0.154209693802656,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0,0.231046011313244,0,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0,0,0.145016693914229,0,0.534192213880424,0,0,1.53135254993501,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0.571890581771475,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.487426979262569,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0.633322905892992,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.447352215784832,0.333698283423817,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0.984685914873589,0.445234820091624,0,0,0.19924798825107,0.276283915531148,0,0,0,0.622079175323615,0.0898683511473268,0,0.511572370226872,0,0,0,0,0.74214478529481,0,0,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.331737779793674,0,0,0,0,0.230850775511391,0.683652335082007,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0.494255755786011,0,0.876214728748802,0,0,0,0,0.242780379534093,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0.173559738335131,0,0.261177619741208,0.17472666824203,0.51595809741485,0,0.292357268344742,0.0821154570532092,0.193978032976839,0,0,0.137041924646751,0,0.253243183823515,0.195551382734803,0.240476460754601,0,0,0,0,0,0.14405479798815,0,0,0,0,0.101998217636322,0,0.600420288709789,0.684526894459965,0,0,0,0.279282401272254,0,0,0.199679000498991,0.858452096273142,0.223171457441873,0.0671834724867263,0.360299883542404,0,0,0,0,0,0.169346664131569,0.795229689809303,0.544813624446302,0,0,0,0.2249738915515,0,0.485996453264197,0,0.0788057072991982,0.262272940674991,0.316801009558219,0,0.191915197319445,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0.170388021785422,0.113312091520126,0,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.500763722825999,1.72022758707021,0.55464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| ||
|short_description=p14@GRAMD3 | |||
}} | }} |
Latest revision as of 01:07, 20 September 2015
Short description: | p14@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_GRAMD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000542322, ENST00000544396, NM_001146320, NM_001146321, NM_023927, uc003ktu.2, uc011cwv.1, uc011cww.1, uc011cwx.1_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | B7Z3R1B7Z1F2Q96HH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 6.14e-20 | 3 |
adipocyte of breast | 2.81e-13 | 2 |
preadipocyte | 6.01e-13 | 12 |
receptor cell | 4.34e-10 | 6 |
sensory epithelial cell | 4.34e-10 | 6 |
olfactory epithelial cell | 4.34e-10 | 6 |
omentum preadipocyte | 4.50e-09 | 3 |
adipocyte of omentum tissue | 6.74e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.81e-16 | 6 |
peritoneum | 2.81e-16 | 6 |
abdominal cavity | 2.81e-16 | 6 |
visceral peritoneum | 2.81e-16 | 6 |
breast | 1.24e-15 | 10 |
chest | 3.42e-14 | 11 |
cavity lining | 3.27e-08 | 12 |
serous membrane | 3.27e-08 | 12 |
cranial nerve II | 2.07e-07 | 1 |
cranial nerve | 2.07e-07 | 1 |
nerve trunk | 2.07e-07 | 1 |
nerve connecting eye with brain | 2.07e-07 | 1 |
nerve | 2.07e-07 | 1 |
retinal neural layer | 2.07e-07 | 1 |
presumptive neural retina | 2.07e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 2.66e-07 | 1 |