FFCP PHASE1:Mm9::chr10:85954636..85954650,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr10:85954636..85954650,- to FFCP PHASE1:Mm9::chr10:85954636..85954650,-: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=27204 | |EntrezGene=27204 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q9QZA3,D3Z620 | |UniProt=Q9QZA3,D3Z620 | ||
|association_with_transcript=0bp_to_ENSMUST00000123783,ENSMUST00000145864,uc007gnp.1,uc007gns.1_5end | |||
|cluster_id=chr10:85954636..85954650,- | |||
|description=CAGE_peak_3_at_Syn3_5end | |||
|id=chr10:85954636..85954650,- | |||
|ontology_enrichment_celltype=CL:0000540!1.27e-17!33;CL:0000047!1.27e-17!33;CL:0000031!1.27e-17!33;CL:0000404!1.27e-17!33;CL:0000117!1.93e-14!23;CL:0000337!1.93e-14!23;CL:0000393!8.70e-13!39;CL:0000211!8.70e-13!39;CL:0000221!3.59e-12!44;CL:0000133!3.59e-12!44;CL:0002319!7.73e-12!43;CL:0000055!2.13e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.48e-18,23;CL:0000337,7.48e-18,23;CL:0000540,4.16e-17,33;CL:0000047,4.16e-17,33;CL:0000031,4.16e-17,33;CL:0000404,4.16e-17,33;CL:0000393,2.34e-13,39;CL:0000211,2.34e-13,39;CL:0002319,1.85e-11,43;CL:0000221,4.83e-11,44;CL:0000133,4.83e-11,44;CL:0002609,7.22e-09,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.18e-17!73;UBERON:0005743!1.18e-17!73;UBERON:0000073!3.92e-17!75;UBERON:0001016!3.92e-17!75;UBERON:0002346!6.30e-17!71;UBERON:0003075!6.30e-17!71;UBERON:0007284!6.30e-17!71;UBERON:0004121!6.89e-17!102;UBERON:0000924!6.89e-17!102;UBERON:0006601!6.89e-17!102;UBERON:0002020!6.44e-13!34;UBERON:0001049!1.18e-12!52;UBERON:0005068!1.18e-12!52;UBERON:0006241!1.18e-12!52;UBERON:0007135!1.18e-12!52;UBERON:0000033!1.11e-11!63;UBERON:0003056!1.16e-11!49;UBERON:0000955!9.52e-10!50;UBERON:0006238!9.52e-10!50;UBERON:0002616!2.74e-09!49;UBERON:0002791!3.08e-09!29;UBERON:0003528!3.08e-09!29;UBERON:0001893!3.08e-09!29;UBERON:0003080!3.22e-09!40;UBERON:0002780!7.31e-09!39;UBERON:0001890!7.31e-09!39;UBERON:0006240!7.31e-09!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.71e-13,34;UBERON:0002346,1.86e-09,64;UBERON:0003075,1.86e-09,64;UBERON:0007284,1.86e-09,64;UBERON:0001017,2.01e-09,73;UBERON:0001016,6.04e-09,75;UBERON:0001948,2.27e-08,5;UBERON:0002315,2.27e-08,5;UBERON:0004121,3.09e-08,95;UBERON:0000924,3.09e-08,95;UBERON:0006601,3.09e-08,95;UBERON:0003528,3.14e-08,29;UBERON:0002791,3.14e-08,29;UBERON:0001893,3.14e-08,29;UBERON:0010371,2.41e-07,73;UBERON:0001049,2.97e-07,52;UBERON:0005068,2.97e-07,52;UBERON:0006241,2.97e-07,52;UBERON:0007135,2.97e-07,52;UBERON:0003056,6.83e-07,49;UBERON:0002240,7.97e-07,6;UBERON:0005174,7.97e-07,6;UBERON:0001137,7.97e-07,6;UBERON:0000073,9.10e-07,54 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91350658212029,10.0508286061686,5.70448263155561,0,0,0,0,0,0,0.768436610643109,4.97710139080693,4.59020190327748,3.78584930432488,7.7125765789027,5.96345060569357,8.69684674426174,5.75072826109418,5.51531271966013,0,0.638436690425939,0.307213066512487,8.5726087024626,10.2466160834699,7.8137005583514,0.279182999001381,1.68828783009504,0.30559649555362,14.4368006882097,15.8032565687004,10.4383689662168,0.075726193333184,0,0,0,0,0.539703191637817,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0,0.173485326766136,0.913396434936424,0.691846491768175,1.05505848386836,0.587943535678524,0,0,0,0,0,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,1.04853447583376,0.915001205637253,14.827213549318,1.04294592115366,0.255715457330331,0.20778804455956,0.486723789203273,0.305518091550949,0,0,0,0.260240885925407,0.689706313300419,1.0803727788321,1.35634336052144,2.10913147369116,2.17793324484245,1.78033276663485,0.776110112217047,0.646703978798527,0.189106080167819,0,0,0.556094498451196,0,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0.0810688095458557,0,0,0,2.10289948564127,8.74689205223918,0,0,0,0.464473343720877,0.38660238396628,0.403367049246685,0,0.190225626112559,0,0.329397909448022,0.251335208800269,0.198956472041151,0,0,0,0,0,0.114248512609729,1.1270773567308,0.203651327845314,0.387904974335251,0.210407459670956,0.505892296994058,0.147610147979602,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.586058432961016,0,0,0.631016438832513,1.17131623288992,1.07711698866399,0.955875191810208,1.33679204449436,0.849229592366497,0.404810701674894,2.04579100537918,1.97643888973262,2.24924921495265,0,0,0.162886959353576,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0.18006109403131,0,0.428674070063185,0.177340233642274,0.713475270408282,0.822745103010605,0,0,0,0,0,0,0.120625849856312,0,0,0,0.18542530201051,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0.324016022465404,0.209088296014469,0.436725127492355,0.134864346384821,0,0,0,0,0,0,0,0,0,0.506868376472335,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,1.14579102687879,1.20297227640581,0,0,0,0.45032120322422,0.453142408984205,0.51776031175182,0.415149390336707,0.399024873401031,1.53660245178721,4.132814190161,2.51535795153579,2.20612210140017,2.66696073361938,1.44224540067226,2.56735367673452,2.77966932940177,3.29523089857312,3.58390048633545,3.183811253976,3.64943368707755,2.87177344778066,3.33405583898152,3.24476112645595,4.05109362973781,2.06042950401653,2.35518272215036,2.40008476669791,3.01708870470874,4.05341522910446,3.77900683244054,2.25862512996793,3.80765735512544,2.56099162021882,3.6829759601298,2.17286582153379,1.68342681497322,3.32178050747688,1.97008964751127,1.22769312950907,2.47898945897546,4.43685205256625,6.24526444844865,2.57324769289949,2.14871054048298,1.53030665655075,0,0.231867835620421 | |phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91350658212029,10.0508286061686,5.70448263155561,0,0,0,0,0,0,0.768436610643109,4.97710139080693,4.59020190327748,3.78584930432488,7.7125765789027,5.96345060569357,8.69684674426174,5.75072826109418,5.51531271966013,0,0.638436690425939,0.307213066512487,8.5726087024626,10.2466160834699,7.8137005583514,0.279182999001381,1.68828783009504,0.30559649555362,14.4368006882097,15.8032565687004,10.4383689662168,0.075726193333184,0,0,0,0,0.539703191637817,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0,0.173485326766136,0.913396434936424,0.691846491768175,1.05505848386836,0.587943535678524,0,0,0,0,0,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,1.04853447583376,0.915001205637253,14.827213549318,1.04294592115366,0.255715457330331,0.20778804455956,0.486723789203273,0.305518091550949,0,0,0,0.260240885925407,0.689706313300419,1.0803727788321,1.35634336052144,2.10913147369116,2.17793324484245,1.78033276663485,0.776110112217047,0.646703978798527,0.189106080167819,0,0,0.556094498451196,0,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0.0810688095458557,0,0,0,2.10289948564127,8.74689205223918,0,0,0,0.464473343720877,0.38660238396628,0.403367049246685,0,0.190225626112559,0,0.329397909448022,0.251335208800269,0.198956472041151,0,0,0,0,0,0.114248512609729,1.1270773567308,0.203651327845314,0.387904974335251,0.210407459670956,0.505892296994058,0.147610147979602,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.586058432961016,0,0,0.631016438832513,1.17131623288992,1.07711698866399,0.955875191810208,1.33679204449436,0.849229592366497,0.404810701674894,2.04579100537918,1.97643888973262,2.24924921495265,0,0,0.162886959353576,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0.18006109403131,0,0.428674070063185,0.177340233642274,0.713475270408282,0.822745103010605,0,0,0,0,0,0,0.120625849856312,0,0,0,0.18542530201051,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0.324016022465404,0.209088296014469,0.436725127492355,0.134864346384821,0,0,0,0,0,0,0,0,0,0.506868376472335,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,1.14579102687879,1.20297227640581,0,0,0,0.45032120322422,0.453142408984205,0.51776031175182,0.415149390336707,0.399024873401031,1.53660245178721,4.132814190161,2.51535795153579,2.20612210140017,2.66696073361938,1.44224540067226,2.56735367673452,2.77966932940177,3.29523089857312,3.58390048633545,3.183811253976,3.64943368707755,2.87177344778066,3.33405583898152,3.24476112645595,4.05109362973781,2.06042950401653,2.35518272215036,2.40008476669791,3.01708870470874,4.05341522910446,3.77900683244054,2.25862512996793,3.80765735512544,2.56099162021882,3.6829759601298,2.17286582153379,1.68342681497322,3.32178050747688,1.97008964751127,1.22769312950907,2.47898945897546,4.43685205256625,6.24526444844865,2.57324769289949,2.14871054048298,1.53030665655075,0,0.231867835620421 | ||
|short_description=p3@Syn3 | |||
}} | }} |
Latest revision as of 12:40, 26 September 2015
Short description: | p3@Syn3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Syn3_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000123783, ENSMUST00000145864, uc007gnp.1, uc007gns.1_5end |
EntrezGene: | Syn3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.48e-18 | 23 |
neuroblast (sensu Vertebrata) | 7.48e-18 | 23 |
neuron | 4.16e-17 | 33 |
neuronal stem cell | 4.16e-17 | 33 |
neuroblast | 4.16e-17 | 33 |
electrically signaling cell | 4.16e-17 | 33 |
electrically responsive cell | 2.34e-13 | 39 |
electrically active cell | 2.34e-13 | 39 |
neural cell | 1.85e-11 | 43 |
ectodermal cell | 4.83e-11 | 44 |
neurectodermal cell | 4.83e-11 | 44 |
neuron of cerebral cortex | 7.22e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
gray matter | 2.71e-13 | 34 |
neurectoderm | 1.86e-09 | 64 |
neural plate | 1.86e-09 | 64 |
presumptive neural plate | 1.86e-09 | 64 |
central nervous system | 2.01e-09 | 73 |
nervous system | 6.04e-09 | 75 |
regional part of spinal cord | 2.27e-08 | 5 |
gray matter of spinal cord | 2.27e-08 | 5 |
ectoderm-derived structure | 3.09e-08 | 95 |
ectoderm | 3.09e-08 | 95 |
presumptive ectoderm | 3.09e-08 | 95 |
brain grey matter | 3.14e-08 | 29 |
regional part of telencephalon | 3.14e-08 | 29 |
telencephalon | 3.14e-08 | 29 |
ecto-epithelium | 2.41e-07 | 73 |
neural tube | 2.97e-07 | 52 |
neural rod | 2.97e-07 | 52 |
future spinal cord | 2.97e-07 | 52 |
neural keel | 2.97e-07 | 52 |
pre-chordal neural plate | 6.83e-07 | 49 |
spinal cord | 7.97e-07 | 6 |
dorsal region element | 7.97e-07 | 6 |
dorsum | 7.97e-07 | 6 |
regional part of nervous system | 9.10e-07 | 54 |