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(Created page with "{{f5samples |id=FF:10638-108I8 |name=clear cell carcinoma cell line:JHOC-5, biol_rep1 |sample_id=10638 |rna_tube_id=108I8 |rna_box=108 |rna_position=I8 |sample_cell_lot...")
 
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{{f5samples
{{f5samples
|id=FF:10638-108I8
|DRA_sample_Accession=CAGE@SAMD00005922
|name=clear cell carcinoma cell line:JHOC-5, biol_rep1
|accession_numbers=CAGE;DRX007860;DRR008732;DRZ000157;DRZ001542;DRZ011507;DRZ012892
|sample_id=10638
|rna_tube_id=108I8
|rna_box=108
|rna_position=I8
|sample_cell_lot=
|sample_cell_catalog=RCB1520
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=ovary
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=54
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.96000
|rna_od260/280=2.09000
|sample_cell_type=unclassifiable
|sample_cell_line=JHOC-5
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=clear cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=27.51944
|rna_concentration=0.58552
|sample_note=
|profile_hcage=CNhs11745,LSID819,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:120,DOID:14566,DOID:162,DOID:193,DOID:299,DOID:305,DOID:4,DOID:4468
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:4468
 
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0102787
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.42!262.27!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.00!99.59!HNF1B;;chr12:66218255..66218304,+!p3@HMGA2!1.52!83.77!HMGA2;;chr8:55370487..55370503,+!p1@SOX17!1.50!30.81!SOX17;;chr1:201979743..201979762,+!p1@ELF3!1.50!30.38!ELF3;;chr12:66218183..66218209,+!p4@HMGA2!1.38!43.68!HMGA2;;chr12:66218152..66218174,+!p10@HMGA2!1.37!23.84!HMGA2;;chr20:31350184..31350200,+!p1@DNMT3B!1.29!37.77!DNMT3B;;chr12:66218378..66218401,+!p6@HMGA2!1.29!28.70!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.27!25.32!HMGA2;;chr1:201979703..201979721,+!p2@ELF3!1.26!17.09!ELF3;;chr2:113982635..113982648,-!p8@PAX8!1.25!16.67!PAX8;;chr17:53342311..53342400,+!p1@HLF!1.24!18.78!HLF;;chr12:66218003..66218018,+!p9@HMGA2!1.21!18.57!HMGA2;;chr7:57509877..57509895,+!p1@ZNF716!1.21!15.19!ZNF716;;chr6:10412600..10412637,-!p1@TFAP2A!1.20!24.48!TFAP2A;;chr12:19556960..19556982,+!p10@AEBP2!1.19!14.56!AEBP2;;chr12:66218573..66218596,+!p7@HMGA2!1.18!21.31!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.17!63.09!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.14!12.66!HMGA2;;chr3:111314186..111314204,-!p1@ZBED2!1.09!11.39!ZBED2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.09!11.39!ZBED1;;chr2:46524897..46524911,+!p2@EPAS1!1.08!30.81!EPAS1;;chr12:66218420..66218439,+!p12@HMGA2!1.08!10.97!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.05!12.66!TFAP2A;;chr12:66358080..66358094,+!p15@HMGA2!1.03!9.71!HMGA2;;chr3:69811858..69811881,+!p5@MITF!1.02!9.49!MITF;;chr17:36104873..36104903,-!p3@HNF1B!0.99!8.86!HNF1B;;chr11:31832658..31832681,-!p1@PAX6!0.98!8.65!PAX6;;chr12:66218836..66218888,+!p1@HMGA2!0.97!80.39!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!0.96!10.55!HMGA2;;chr17:36105074..36105086,-!p2@HNF1B!0.96!8.02!HNF1B;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.86!TFAP2A;;chr12:19556998..19557013,+!p6@AEBP2!0.91!7.17!AEBP2;;chr11:65667884..65667895,-!p2@FOSL1!0.90!27.85!FOSL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.89!14.98!ZNF395;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.75!FOXE1;;chr3:32023232..32023273,+!p1@ZNF860!0.88!9.71!ZNF860;;chr19:45971246..45971265,+!p1@FOSB!0.85!120.48!FOSB;;chr7:28725740..28725778,+!p1@CREB5!0.85!58.24!CREB5;;chr7:27153454..27153469,-!p2@HOXA3!0.83!5.70!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.83!5.70!HOXA4;;chr17:46682321..46682362,-!p1@HOXB6!0.83!5.70!HOXB6;;chr12:77459306..77459365,-!p1@E2F7!0.82!75.12!E2F7;;chr14:62213758..62213774,+!p8@HIF1A!0.81!7.17!HIF1A;;chr6:28048343..28048354,+!p1@ZNF165!0.81!5.49!ZNF165;;chr17:41623692..41623715,-!p1@ETV4!0.80!24.69!ETV4;;chr7:28448965..28448994,+!p2@CREB5!0.80!20.04!CREB5;;chr14:62213827..62213853,+!p6@HIF1A!0.80!7.81!HIF1A;;chr3:141747459..141747475,-!p1@TFDP2!0.78!45.58!TFDP2;;chr7:26191809..26191890,+!p1@NFE2L3!0.78!27.01!NFE2L3;;chr12:66357317..66357328,+!p19@HMGA2!0.78!5.06!HMGA2;;chr14:62203595..62203676,+!p4@HIF1A!0.77!9.71!HIF1A;;chr1:59249645..59249656,-!p4@JUN!0.75!12.45!JUN;;chr8:76319876..76319926,+!p1@HNF4G!0.75!4.64!HNF4G;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.64!HOXD8;;chr3:69812798..69812824,+!p8@MITF!0.75!4.64!MITF;;chr3:101546827..101546847,+!p2@NFKBIZ!0.74!6.54!NFKBIZ;;chr3:101568349..101568365,+!p1@NFKBIZ!0.73!258.05!NFKBIZ;;chr17:41277372..41277418,-!p1@BRCA1!0.73!17.51!BRCA1;;chr1:8934931..8934947,-!p4@ENO1!0.73!15.61!ENO1;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.23!EPAS1;;chr17:46622229..46622257,-!p6@HOXB2!0.73!5.27!HOXB2;;chr3:69915369..69915381,+!p4@MITF!0.73!4.43!MITF;;chr13:79177703..79177729,-!p2@POU4F1!0.73!4.43!POU4F1;;chr15:67357924..67357952,+!p2@SMAD3!0.72!31.86!SMAD3;;chr7:27135591..27135658,-!p1@HOXA1!0.72!8.65!HOXA1;;chr5:170736243..170736279,+!p1@TLX3!0.72!4.22!TLX3;;chr3:69811882..69811898,+!p6@MITF!0.72!4.22!MITF;;chr17:46688334..46688385,-!p1@HOXB7!0.70!6.12!HOXB7;;chr5:170736216..170736238,+!p2@TLX3!0.70!4.01!TLX3;;chr19:22235279..22235301,+!p1@ZNF257!0.69!8.02!ZNF257;;chr10:104154246..104154347,+!p3@NFKB2!0.68!26.16!NFKB2;;chr16:51185172..51185197,-!p1@SALL1!0.68!3.80!SALL1;;chr2:176969228..176969260,+!p1@HOXD11!0.68!3.80!HOXD11;;chr3:69915385..69915438,+!p3@MITF!0.68!3.80!MITF;;chr8:77593474..77593612,+!p1@ZFHX4!0.67!17.51!ZFHX4;;chr17:41622834..41622883,-!p6@ETV4!0.67!4.64!ETV4;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.01!SHOX2;;chr6:44233252..44233296,-!p1@NFKBIE!0.66!41.14!NFKBIE;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.78!FOXD1;;chr14:35872453..35872485,-!p2@NFKBIA!0.66!9.71!NFKBIA;;chr19:48774586..48774670,+!p1@ZNF114!0.66!4.64!ZNF114;;chr12:85673977..85674015,+!p1@ALX1!0.66!3.59!ALX1;;chr18:55102598..55102623,+!p1@ONECUT2!0.66!3.59!ONECUT2;;chr5:172662197..172662216,-!p1@NKX2-5!0.66!3.59!NKX2-5;;chr2:191906489..191906517,-!p6@STAT4!0.66!3.59!STAT4;;chr16:29818160..29818188,+!p6@MAZ!0.65!18.78!MAZ;;chr16:1429627..1429662,-!p2@UNKL!0.65!11.39!UNKL;;chr22:42269885..42269899,+!p4@SREBF2!0.65!5.49!SREBF2;;chr5:72743793..72743855,-!p4@FOXD1!0.65!4.22!FOXD1;;chr10:104155480..104155534,+!p2@NFKB2!0.64!25.32!NFKB2;;chr22:38597987..38598021,+!p2@MAFF!0.64!24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|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
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Line 67: Line 39:
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|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.96
|rna_od260/280=2.09
|rna_position=I8
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|rna_sample_type=total RNA
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|sample_age=54
|sample_category=cell lines
|sample_cell_catalog=RCB1520
|sample_cell_line=JHOC-5
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|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=clear cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.5942060158385e-254!GO:0043226;organelle;4.51403254554761e-206!GO:0043229;intracellular organelle;1.71825087957831e-205!GO:0043231;intracellular membrane-bound organelle;3.93553811806255e-205!GO:0043227;membrane-bound organelle;4.79095515375571e-205!GO:0005737;cytoplasm;7.5383361347478e-190!GO:0044422;organelle part;1.59276365976319e-164!GO:0044446;intracellular organelle part;6.51348261952887e-163!GO:0044444;cytoplasmic part;1.91079961132775e-129!GO:0032991;macromolecular complex;1.12307714637691e-114!GO:0044237;cellular metabolic process;5.05675819328449e-92!GO:0030529;ribonucleoprotein complex;1.22154979143878e-90!GO:0044238;primary metabolic process;1.47094223938112e-90!GO:0044428;nuclear part;1.27498380830813e-86!GO:0005634;nucleus;1.33835430319376e-85!GO:0043170;macromolecule metabolic process;7.78157220452578e-83!GO:0043233;organelle lumen;1.58077019570014e-81!GO:0031974;membrane-enclosed lumen;1.58077019570014e-81!GO:0005739;mitochondrion;8.96505960202521e-77!GO:0003723;RNA binding;3.18067024315221e-74!GO:0005515;protein binding;1.0296230513004e-69!GO:0043234;protein complex;2.00767929808052e-60!GO:0006396;RNA processing;2.41332595725739e-55!GO:0031090;organelle membrane;4.38900280612075e-54!GO:0019538;protein metabolic process;2.7913150617643e-53!GO:0005840;ribosome;1.53804242617768e-52!GO:0016043;cellular component organization and biogenesis;3.32343455496543e-52!GO:0006412;translation;2.31204303148438e-51!GO:0031981;nuclear lumen;1.69516542573258e-50!GO:0044429;mitochondrial part;3.48498241884862e-50!GO:0043283;biopolymer metabolic process;1.20059637132503e-49!GO:0044267;cellular protein metabolic process;2.32056594871559e-47!GO:0044260;cellular macromolecule metabolic process;2.7015227483357e-47!GO:0033036;macromolecule localization;1.03733942176181e-46!GO:0015031;protein transport;1.06187945144433e-46!GO:0031967;organelle envelope;6.61336536190901e-46!GO:0003735;structural constituent of ribosome;7.72956466159714e-46!GO:0031975;envelope;1.68670375385386e-45!GO:0009058;biosynthetic process;3.15309761095438e-45!GO:0044249;cellular biosynthetic process;9.49660372322914e-44!GO:0043228;non-membrane-bound organelle;9.68556498173541e-44!GO:0043232;intracellular non-membrane-bound organelle;9.68556498173541e-44!GO:0008104;protein localization;5.41798887253481e-43!GO:0045184;establishment of protein localization;5.07078496006465e-42!GO:0016071;mRNA metabolic process;2.43114725233862e-41!GO:0008380;RNA splicing;2.62761148486338e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.56742771087699e-41!GO:0046907;intracellular transport;1.43461740421676e-39!GO:0033279;ribosomal subunit;5.1133291209441e-39!GO:0006996;organelle organization and biogenesis;7.5339031634596e-39!GO:0005829;cytosol;1.49501199577197e-38!GO:0009059;macromolecule biosynthetic process;5.88008314651654e-38!GO:0010467;gene expression;1.78732027492945e-37!GO:0006397;mRNA processing;7.14009977803082e-37!GO:0006259;DNA metabolic process;1.94211025588269e-36!GO:0065003;macromolecular complex assembly;6.83447512162318e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.13517574285631e-34!GO:0006886;intracellular protein transport;6.89342538437174e-33!GO:0007049;cell cycle;2.64843579411191e-32!GO:0005740;mitochondrial envelope;1.93462521512798e-31!GO:0005654;nucleoplasm;2.90368446766794e-31!GO:0022607;cellular component assembly;3.93593023380809e-30!GO:0000166;nucleotide binding;1.12355223089823e-29!GO:0019866;organelle inner membrane;1.32167854317551e-29!GO:0031966;mitochondrial membrane;2.86289583654593e-29!GO:0005681;spliceosome;3.31935009640743e-29!GO:0005743;mitochondrial inner membrane;3.08833449753193e-27!GO:0051649;establishment of cellular localization;5.3697673139879e-27!GO:0051641;cellular localization;7.58611494368324e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.10928881349599e-25!GO:0044451;nucleoplasm part;4.87543034145577e-25!GO:0006974;response to DNA damage stimulus;8.73208074217267e-25!GO:0000278;mitotic cell cycle;2.46261878751535e-24!GO:0022402;cell cycle process;3.94219654323966e-24!GO:0012505;endomembrane system;2.51334814256072e-23!GO:0016462;pyrophosphatase activity;5.68295028455337e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.98697262184177e-23!GO:0006119;oxidative phosphorylation;7.40337795907423e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.05009465826145e-22!GO:0017111;nucleoside-triphosphatase activity;1.82577236421379e-22!GO:0031980;mitochondrial lumen;2.07410700540898e-22!GO:0005759;mitochondrial matrix;2.07410700540898e-22!GO:0044455;mitochondrial membrane part;2.97985830378151e-22!GO:0003676;nucleic acid binding;1.05334825914309e-21!GO:0005694;chromosome;1.85586991434894e-21!GO:0006457;protein folding;1.88311834856367e-21!GO:0005730;nucleolus;2.77231377732465e-21!GO:0044445;cytosolic part;3.02718633577203e-21!GO:0032553;ribonucleotide binding;3.48550905777391e-21!GO:0032555;purine ribonucleotide binding;3.48550905777391e-21!GO:0016874;ligase activity;6.50745921199135e-21!GO:0015935;small ribosomal subunit;1.18388142694807e-20!GO:0017076;purine nucleotide binding;1.5436138672841e-20!GO:0000087;M phase of mitotic cell cycle;1.85451591680553e-20!GO:0007067;mitosis;2.70439179856117e-20!GO:0006281;DNA repair;3.74904701725488e-20!GO:0006512;ubiquitin cycle;5.10236476205361e-20!GO:0044265;cellular macromolecule catabolic process;5.6245557570127e-20!GO:0043285;biopolymer catabolic process;1.40821516077104e-19!GO:0015934;large ribosomal subunit;1.62474614761988e-19!GO:0022618;protein-RNA complex assembly;1.76189480440895e-19!GO:0044427;chromosomal part;1.81436794919668e-19!GO:0009057;macromolecule catabolic process;7.70413401276625e-19!GO:0022403;cell cycle phase;7.72003844979298e-19!GO:0005524;ATP binding;1.38317416254408e-18!GO:0051301;cell division;1.49506650580253e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.75925922132049e-18!GO:0032559;adenyl ribonucleotide binding;1.99174735726323e-18!GO:0019941;modification-dependent protein catabolic process;2.5659356992526e-18!GO:0043632;modification-dependent macromolecule catabolic process;2.5659356992526e-18!GO:0006511;ubiquitin-dependent protein catabolic process;2.6938811123141e-18!GO:0005761;mitochondrial ribosome;3.42762631649782e-18!GO:0000313;organellar ribosome;3.42762631649782e-18!GO:0000502;proteasome complex (sensu Eukaryota);3.5682739498978e-18!GO:0044257;cellular protein catabolic process;4.14483353250196e-18!GO:0005783;endoplasmic reticulum;6.23764082470205e-18!GO:0030554;adenyl nucleotide binding;1.27030399335979e-17!GO:0051186;cofactor metabolic process;1.47035295282906e-17!GO:0043412;biopolymer modification;2.48933627507609e-17!GO:0030163;protein catabolic process;3.41444156303565e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.50959293461234e-17!GO:0048770;pigment granule;6.27858181921638e-17!GO:0042470;melanosome;6.27858181921638e-17!GO:0008134;transcription factor binding;6.27858181921638e-17!GO:0044248;cellular catabolic process;6.37657824382023e-17!GO:0005746;mitochondrial respiratory chain;7.77225151017495e-17!GO:0000279;M phase;8.90265897017271e-17!GO:0006605;protein targeting;9.18757408381679e-17!GO:0006260;DNA replication;1.00041964025406e-16!GO:0044432;endoplasmic reticulum part;1.18140340043021e-16!GO:0031965;nuclear membrane;3.29277417263521e-16!GO:0016070;RNA metabolic process;7.76516206615534e-16!GO:0005635;nuclear envelope;1.23737395171787e-15!GO:0009719;response to endogenous stimulus;1.27396062805376e-15!GO:0051276;chromosome organization and biogenesis;1.53082629718459e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.63457127720954e-15!GO:0003954;NADH dehydrogenase activity;1.63457127720954e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.63457127720954e-15!GO:0012501;programmed cell death;1.95923244319596e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.5376714029772e-15!GO:0000375;RNA splicing, via transesterification reactions;2.5376714029772e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.5376714029772e-15!GO:0006915;apoptosis;4.34960112778627e-15!GO:0006464;protein modification process;5.31473798836162e-15!GO:0042254;ribosome biogenesis and assembly;5.34439517186748e-15!GO:0044453;nuclear membrane part;6.371769899423e-15!GO:0016887;ATPase activity;7.75015514370998e-15!GO:0008135;translation factor activity, nucleic acid binding;1.23481127387736e-14!GO:0042623;ATPase activity, coupled;1.42303460539948e-14!GO:0008219;cell death;4.55662808898652e-14!GO:0016265;death;4.55662808898652e-14!GO:0051082;unfolded protein binding;6.4390500122273e-14!GO:0048193;Golgi vesicle transport;7.12191740322074e-14!GO:0043687;post-translational protein modification;1.50370201953386e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.14207865148012e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.25678313482272e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.44243920260541e-13!GO:0045271;respiratory chain complex I;2.44243920260541e-13!GO:0005747;mitochondrial respiratory chain complex I;2.44243920260541e-13!GO:0006732;coenzyme metabolic process;3.90424962996111e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.94051276856391e-13!GO:0042773;ATP synthesis coupled electron transport;3.94051276856391e-13!GO:0016192;vesicle-mediated transport;4.25362580797109e-13!GO:0006399;tRNA metabolic process;6.02882040753725e-13!GO:0005789;endoplasmic reticulum membrane;6.73118576198009e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.77706403209536e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.49171754007505e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.02394745283617e-12!GO:0000074;regulation of progression through cell cycle;3.02272012480764e-12!GO:0009259;ribonucleotide metabolic process;3.8546021371224e-12!GO:0005643;nuclear pore;3.87669211883436e-12!GO:0005794;Golgi apparatus;3.93229852178507e-12!GO:0051726;regulation of cell cycle;4.08687492443755e-12!GO:0006413;translational initiation;8.47234948772434e-12!GO:0004386;helicase activity;9.77225513879993e-12!GO:0003743;translation initiation factor activity;1.06151017651017e-11!GO:0015630;microtubule cytoskeleton;1.21717856497044e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.28550352502972e-11!GO:0016604;nuclear body;2.0812993220157e-11!GO:0009055;electron carrier activity;2.33185564946e-11!GO:0006163;purine nucleotide metabolic process;2.34278971085103e-11!GO:0009056;catabolic process;2.93770741509223e-11!GO:0006913;nucleocytoplasmic transport;2.93809415816803e-11!GO:0006446;regulation of translational initiation;3.88175897682344e-11!GO:0009260;ribonucleotide biosynthetic process;4.5760060722525e-11!GO:0006323;DNA packaging;4.62476956353818e-11!GO:0008639;small protein conjugating enzyme activity;4.8255872428597e-11!GO:0003712;transcription cofactor activity;6.82873716232807e-11!GO:0006164;purine nucleotide biosynthetic process;6.90106935264572e-11!GO:0051169;nuclear transport;7.80390413941218e-11!GO:0004842;ubiquitin-protein ligase activity;9.92749796950522e-11!GO:0065002;intracellular protein transport across a membrane;1.02387169946619e-10!GO:0009150;purine ribonucleotide metabolic process;1.06499702430331e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.23852629025195e-10!GO:0006461;protein complex assembly;2.10276497959083e-10!GO:0019787;small conjugating protein ligase activity;2.50604742663637e-10!GO:0043067;regulation of programmed cell death;2.737158428498e-10!GO:0007005;mitochondrion organization and biogenesis;2.737158428498e-10!GO:0006403;RNA localization;2.76735183265505e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.07903268381294e-10!GO:0000785;chromatin;3.71092480214683e-10!GO:0042981;regulation of apoptosis;3.93210306822439e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.55527157733919e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.55527157733919e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.55527157733919e-10!GO:0008026;ATP-dependent helicase activity;4.5766437895861e-10!GO:0050657;nucleic acid transport;4.82933783987105e-10!GO:0051236;establishment of RNA localization;4.82933783987105e-10!GO:0050658;RNA transport;4.82933783987105e-10!GO:0051188;cofactor biosynthetic process;4.92931433603155e-10!GO:0006364;rRNA processing;5.72327789106568e-10!GO:0016072;rRNA metabolic process;6.4682196408951e-10!GO:0016740;transferase activity;6.5058295749018e-10!GO:0046930;pore complex;6.65258682870774e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.6658894346697e-10!GO:0017038;protein import;8.10970398303061e-10!GO:0043038;amino acid activation;8.10970398303061e-10!GO:0006418;tRNA aminoacylation for protein translation;8.10970398303061e-10!GO:0043039;tRNA aminoacylation;8.10970398303061e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.0280090414453e-10!GO:0009199;ribonucleoside triphosphate metabolic process;9.99439869388672e-10!GO:0043069;negative regulation of programmed cell death;1.25502312285846e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.31456133453157e-09!GO:0009141;nucleoside triphosphate metabolic process;1.54926499199332e-09!GO:0005768;endosome;1.96759727119064e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.34125242385196e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.34125242385196e-09!GO:0065004;protein-DNA complex assembly;2.34125242385196e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.92016166771676e-09!GO:0043066;negative regulation of apoptosis;4.07653789212108e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.7489630326621e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.7489630326621e-09!GO:0015986;ATP synthesis coupled proton transport;4.7489630326621e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.7489630326621e-09!GO:0016607;nuclear speck;5.73331257979615e-09!GO:0006333;chromatin assembly or disassembly;5.9703079340761e-09!GO:0006366;transcription from RNA polymerase II promoter;6.96006925939054e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.86499652325865e-09!GO:0005793;ER-Golgi intermediate compartment;8.90879190528556e-09!GO:0016881;acid-amino acid ligase activity;9.05086934864232e-09!GO:0016779;nucleotidyltransferase activity;9.07558214358995e-09!GO:0008565;protein transporter activity;9.49018585706507e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.12526101925422e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.12526101925422e-08!GO:0043566;structure-specific DNA binding;1.22589829166925e-08!GO:0046034;ATP metabolic process;1.45569601735807e-08!GO:0032446;protein modification by small protein conjugation;1.8232186395252e-08!GO:0009117;nucleotide metabolic process;1.86263280765641e-08!GO:0009060;aerobic respiration;1.89676520075543e-08!GO:0016787;hydrolase activity;2.3891125642919e-08!GO:0051028;mRNA transport;2.72768713506432e-08!GO:0016567;protein ubiquitination;2.92861843433323e-08!GO:0009108;coenzyme biosynthetic process;2.93686827887504e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.14269002513826e-08!GO:0000775;chromosome, pericentric region;3.74534443894275e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.25802322835477e-08!GO:0006261;DNA-dependent DNA replication;4.88327973300685e-08!GO:0006754;ATP biosynthetic process;5.78136899723584e-08!GO:0006753;nucleoside phosphate metabolic process;5.78136899723584e-08!GO:0048523;negative regulation of cellular process;5.90826065665928e-08!GO:0005667;transcription factor complex;7.3394330957977e-08!GO:0015078;hydrogen ion transmembrane transporter activity;7.70142777649683e-08!GO:0006793;phosphorus metabolic process;7.95066839371328e-08!GO:0006796;phosphate metabolic process;7.95066839371328e-08!GO:0045333;cellular respiration;1.04693117409814e-07!GO:0006916;anti-apoptosis;1.26178223535802e-07!GO:0004298;threonine endopeptidase activity;1.31501746811921e-07!GO:0005819;spindle;1.38693548941983e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.79015044054597e-07!GO:0019829;cation-transporting ATPase activity;1.95865708042591e-07!GO:0003697;single-stranded DNA binding;2.29015951815187e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.48733375886809e-07!GO:0000245;spliceosome assembly;2.52555751652906e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.3087302856693e-07!GO:0030120;vesicle coat;4.94779875702393e-07!GO:0030662;coated vesicle membrane;4.94779875702393e-07!GO:0045259;proton-transporting ATP synthase complex;5.1857583717385e-07!GO:0051246;regulation of protein metabolic process;5.4579629824472e-07!GO:0005815;microtubule organizing center;5.52276211447635e-07!GO:0016568;chromatin modification;6.46732067330739e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.70593581176405e-07!GO:0006334;nucleosome assembly;6.88925475603127e-07!GO:0005813;centrosome;7.1059490635499e-07!GO:0006752;group transfer coenzyme metabolic process;7.37072437729507e-07!GO:0048519;negative regulation of biological process;1.14972486594232e-06!GO:0006606;protein import into nucleus;1.25465574454932e-06!GO:0048475;coated membrane;1.44618572252911e-06!GO:0030117;membrane coat;1.44618572252911e-06!GO:0006099;tricarboxylic acid cycle;1.56575941423604e-06!GO:0046356;acetyl-CoA catabolic process;1.56575941423604e-06!GO:0016310;phosphorylation;1.61643311116054e-06!GO:0043623;cellular protein complex assembly;2.07449234881327e-06!GO:0005770;late endosome;2.07449234881327e-06!GO:0051170;nuclear import;2.10150926923648e-06!GO:0005657;replication fork;2.18705657117447e-06!GO:0050794;regulation of cellular process;2.44192248392853e-06!GO:0003899;DNA-directed RNA polymerase activity;2.49831799399732e-06!GO:0006084;acetyl-CoA metabolic process;2.71135440674728e-06!GO:0005762;mitochondrial large ribosomal subunit;2.71135440674728e-06!GO:0000315;organellar large ribosomal subunit;2.71135440674728e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.84867114196145e-06!GO:0051187;cofactor catabolic process;3.33310011628916e-06!GO:0044440;endosomal part;3.33310011628916e-06!GO:0010008;endosome membrane;3.33310011628916e-06!GO:0031497;chromatin assembly;3.44767541368894e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.83380730112031e-06!GO:0003924;GTPase activity;3.85254512280758e-06!GO:0000314;organellar small ribosomal subunit;4.39695554175959e-06!GO:0005763;mitochondrial small ribosomal subunit;4.39695554175959e-06!GO:0008094;DNA-dependent ATPase activity;4.44990686103062e-06!GO:0016491;oxidoreductase activity;5.85015588231693e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.01174934011229e-06!GO:0051329;interphase of mitotic cell cycle;6.10990037585224e-06!GO:0008654;phospholipid biosynthetic process;6.6433632323723e-06!GO:0007051;spindle organization and biogenesis;7.10056815528604e-06!GO:0000151;ubiquitin ligase complex;7.1048927261587e-06!GO:0007088;regulation of mitosis;7.54041540298222e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.835069016477e-06!GO:0003724;RNA helicase activity;7.97230922270895e-06!GO:0003690;double-stranded DNA binding;8.65538017530435e-06!GO:0044431;Golgi apparatus part;1.04427773218308e-05!GO:0006613;cotranslational protein targeting to membrane;1.17078124382746e-05!GO:0016563;transcription activator activity;1.26482422695159e-05!GO:0051427;hormone receptor binding;1.41575693914439e-05!GO:0051325;interphase;1.52832428836235e-05!GO:0009109;coenzyme catabolic process;1.96438807944318e-05!GO:0000075;cell cycle checkpoint;2.13047634230129e-05!GO:0003714;transcription corepressor activity;2.15612133060246e-05!GO:0031324;negative regulation of cellular metabolic process;3.0468137069792e-05!GO:0005874;microtubule;3.10652729429438e-05!GO:0035257;nuclear hormone receptor binding;3.21198629289353e-05!GO:0009165;nucleotide biosynthetic process;3.41121312586802e-05!GO:0045786;negative regulation of progression through cell cycle;3.87162827549151e-05!GO:0003713;transcription coactivator activity;4.00987433488012e-05!GO:0006302;double-strand break repair;4.5919660675722e-05!GO:0007010;cytoskeleton organization and biogenesis;4.69720411378439e-05!GO:0016564;transcription repressor activity;5.42113827651373e-05!GO:0005769;early endosome;6.39125326296363e-05!GO:0006839;mitochondrial transport;6.43243168496481e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.06287875368795e-05!GO:0006091;generation of precursor metabolites and energy;7.66899844221903e-05!GO:0065009;regulation of a molecular function;7.87632070314888e-05!GO:0045454;cell redox homeostasis;8.11336571064248e-05!GO:0043021;ribonucleoprotein binding;8.58653429627681e-05!GO:0005525;GTP binding;8.6897131337899e-05!GO:0005788;endoplasmic reticulum lumen;8.7954795648972e-05!GO:0031988;membrane-bound vesicle;9.84047021174936e-05!GO:0000139;Golgi membrane;9.87843612704338e-05!GO:0008033;tRNA processing;0.000105196897979137!GO:0031968;organelle outer membrane;0.000107807781016578!GO:0016023;cytoplasmic membrane-bound vesicle;0.000111028012745284!GO:0016126;sterol biosynthetic process;0.000111028012745284!GO:0007243;protein kinase cascade;0.00011181618980727!GO:0019899;enzyme binding;0.000117355847599746!GO:0009892;negative regulation of metabolic process;0.000119000381660252!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000119906689150145!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000125334893115035!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000128712717413702!GO:0031252;leading edge;0.000132104391778235!GO:0016853;isomerase activity;0.000132744589322003!GO:0048471;perinuclear region of cytoplasm;0.000135239219677264!GO:0006612;protein targeting to membrane;0.000151458796727114!GO:0019867;outer membrane;0.000152565857271942!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000152565857271942!GO:0051168;nuclear export;0.000153958003948874!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000176178613106434!GO:0015399;primary active transmembrane transporter activity;0.000176178613106434!GO:0005798;Golgi-associated vesicle;0.000194056459187687!GO:0008610;lipid biosynthetic process;0.000194056459187687!GO:0019752;carboxylic acid metabolic process;0.000195242547152579!GO:0003684;damaged DNA binding;0.000197822139929014!GO:0008186;RNA-dependent ATPase activity;0.000230724515567078!GO:0006082;organic acid metabolic process;0.000238077120347834!GO:0008250;oligosaccharyl transferase complex;0.000238077120347834!GO:0006950;response to stress;0.000244559211297234!GO:0005048;signal sequence binding;0.000248929739966584!GO:0006695;cholesterol biosynthetic process;0.000252356735843758!GO:0000776;kinetochore;0.000254211385031566!GO:0033116;ER-Golgi intermediate compartment membrane;0.000264274689607917!GO:0043681;protein import into mitochondrion;0.00027382353121943!GO:0007006;mitochondrial membrane organization and biogenesis;0.000291124985206793!GO:0004576;oligosaccharyl transferase activity;0.000297947784056813!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000308821875668407!GO:0048522;positive regulation of cellular process;0.000317022991044283!GO:0015980;energy derivation by oxidation of organic compounds;0.000320306383009205!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000325629695942888!GO:0006626;protein targeting to mitochondrion;0.000333012517502069!GO:0046483;heterocycle metabolic process;0.000342140460691815!GO:0051052;regulation of DNA metabolic process;0.000384624621513456!GO:0007059;chromosome segregation;0.000399996032401295!GO:0008637;apoptotic mitochondrial changes;0.000402326508942036!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000410277324240025!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000435960412733421!GO:0048468;cell development;0.000438904046370906!GO:0006520;amino acid metabolic process;0.000438904046370906!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000493421065790677!GO:0004674;protein serine/threonine kinase activity;0.000496381162885178!GO:0007093;mitotic cell cycle checkpoint;0.000499102967615107!GO:0003678;DNA helicase activity;0.000503837034655231!GO:0016859;cis-trans isomerase activity;0.000532459414154709!GO:0005741;mitochondrial outer membrane;0.000562534627339757!GO:0016481;negative regulation of transcription;0.000608317744814115!GO:0006414;translational elongation;0.000608600918307482!GO:0051920;peroxiredoxin activity;0.000618362351455839!GO:0046467;membrane lipid biosynthetic process;0.000632477445567043!GO:0015631;tubulin binding;0.000633765545249222!GO:0016197;endosome transport;0.000636285474806007!GO:0030880;RNA polymerase complex;0.000681195235893595!GO:0030036;actin cytoskeleton organization and biogenesis;0.000683557408141764!GO:0000786;nucleosome;0.000683557408141764!GO:0007017;microtubule-based process;0.000687216637329595!GO:0004004;ATP-dependent RNA helicase activity;0.000687226203102649!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000708747226015589!GO:0003729;mRNA binding;0.000709658777206532!GO:0016363;nuclear matrix;0.000739590781070127!GO:0044452;nucleolar part;0.000739590781070127!GO:0019843;rRNA binding;0.000763637859162383!GO:0005885;Arp2/3 protein complex;0.000771467216592479!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000798918420335704!GO:0006383;transcription from RNA polymerase III promoter;0.000817214019257821!GO:0032561;guanyl ribonucleotide binding;0.000830616823521283!GO:0019001;guanyl nucleotide binding;0.000830616823521283!GO:0016272;prefoldin complex;0.000838955777150569!GO:0006352;transcription initiation;0.000861119214837789!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00088642692853801!GO:0006310;DNA recombination;0.000910718660753547!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.000911760658847027!GO:0005773;vacuole;0.000981184682528198!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000981184682528198!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000981184682528198!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000981184682528198!GO:0005684;U2-dependent spliceosome;0.00102574918840498!GO:0048487;beta-tubulin binding;0.0010350911837395!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0010350911837395!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0010350911837395!GO:0030867;rough endoplasmic reticulum membrane;0.0010564993410135!GO:0005905;coated pit;0.0010564993410135!GO:0018196;peptidyl-asparagine modification;0.00106144882103588!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00106144882103588!GO:0003682;chromatin binding;0.00112205902328979!GO:0008632;apoptotic program;0.00113069174508893!GO:0005876;spindle microtubule;0.00114927494614575!GO:0006402;mRNA catabolic process;0.00123968416190409!GO:0030118;clathrin coat;0.00125800083585475!GO:0042802;identical protein binding;0.00129626617835908!GO:0006891;intra-Golgi vesicle-mediated transport;0.00136900674276034!GO:0032508;DNA duplex unwinding;0.00140832192821649!GO:0032392;DNA geometric change;0.00140832192821649!GO:0001836;release of cytochrome c from mitochondria;0.00140832192821649!GO:0016251;general RNA polymerase II transcription factor activity;0.00151596722376376!GO:0006401;RNA catabolic process;0.00152975974385615!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00154530952754029!GO:0000428;DNA-directed RNA polymerase complex;0.00154530952754029!GO:0007264;small GTPase mediated signal transduction;0.00164558954182828!GO:0008168;methyltransferase activity;0.0016523464459469!GO:0043492;ATPase activity, coupled to movement of substances;0.00166680031129337!GO:0045045;secretory pathway;0.00170461614730458!GO:0051789;response to protein stimulus;0.00177995024763847!GO:0006986;response to unfolded protein;0.00177995024763847!GO:0016044;membrane organization and biogenesis;0.00182146531519201!GO:0000059;protein import into nucleus, docking;0.00187475397878352!GO:0016741;transferase activity, transferring one-carbon groups;0.00192942531555123!GO:0050789;regulation of biological process;0.00195050725894167!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00195648027595387!GO:0000287;magnesium ion binding;0.00202727452809643!GO:0030658;transport vesicle membrane;0.002044138108073!GO:0031982;vesicle;0.00211575690644793!GO:0046474;glycerophospholipid biosynthetic process;0.00212213805437424!GO:0031902;late endosome membrane;0.00224631911925663!GO:0005637;nuclear inner membrane;0.0023766949413971!GO:0048500;signal recognition particle;0.0023881944874957!GO:0046489;phosphoinositide biosynthetic process;0.00254652954499217!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00264881124196011!GO:0051087;chaperone binding;0.00267025632440011!GO:0045893;positive regulation of transcription, DNA-dependent;0.00271724310625225!GO:0051540;metal cluster binding;0.00271724310625225!GO:0051536;iron-sulfur cluster binding;0.00271724310625225!GO:0051098;regulation of binding;0.00277924588142848!GO:0043596;nuclear replication fork;0.00278127803145649!GO:0006268;DNA unwinding during replication;0.00284232206647542!GO:0030659;cytoplasmic vesicle membrane;0.00286665477535731!GO:0006220;pyrimidine nucleotide metabolic process;0.0028717553059212!GO:0031410;cytoplasmic vesicle;0.00289444654507379!GO:0006270;DNA replication initiation;0.00317674481216957!GO:0030521;androgen receptor signaling pathway;0.00351178675938571!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00361315490433557!GO:0007052;mitotic spindle organization and biogenesis;0.00361315490433557!GO:0000323;lytic vacuole;0.00363273036588041!GO:0005764;lysosome;0.00363273036588041!GO:0051101;regulation of DNA binding;0.00363273036588041!GO:0050662;coenzyme binding;0.00375398932171179!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00383649477319803!GO:0030660;Golgi-associated vesicle membrane;0.00409398944169418!GO:0042770;DNA damage response, signal transduction;0.00423696582491952!GO:0006289;nucleotide-excision repair;0.00424702242791583!GO:0006284;base-excision repair;0.00429225071418861!GO:0008092;cytoskeletal protein binding;0.00433972378922201!GO:0006144;purine base metabolic process;0.00434893529280788!GO:0008234;cysteine-type peptidase activity;0.00439513236323235!GO:0000228;nuclear chromosome;0.00439513236323235!GO:0035258;steroid hormone receptor binding;0.00446527048311467!GO:0030029;actin filament-based process;0.0047916382130288!GO:0043065;positive regulation of apoptosis;0.00483739119140405!GO:0022415;viral reproductive process;0.00483739119140405!GO:0051252;regulation of RNA metabolic process;0.00489586000294227!GO:0032200;telomere organization and biogenesis;0.00489586000294227!GO:0000723;telomere maintenance;0.00489586000294227!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00496264081071964!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00502677379959025!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00504959274842712!GO:0022890;inorganic cation transmembrane transporter activity;0.00507238314389537!GO:0045941;positive regulation of transcription;0.00516358970468347!GO:0007050;cell cycle arrest;0.00530162765727733!GO:0003711;transcription elongation regulator activity;0.00530162765727733!GO:0008312;7S RNA binding;0.00540929227255597!GO:0031072;heat shock protein binding;0.00540929227255597!GO:0043624;cellular protein complex disassembly;0.00541113383942222!GO:0006611;protein export from nucleus;0.00594706214950516!GO:0043068;positive regulation of programmed cell death;0.00613761462069347!GO:0009112;nucleobase metabolic process;0.00616193838093616!GO:0030132;clathrin coat of coated pit;0.00621028844897741!GO:0008022;protein C-terminus binding;0.00624160675727213!GO:0050790;regulation of catalytic activity;0.00630437691783249!GO:0006778;porphyrin metabolic process;0.00659370053925517!GO:0033013;tetrapyrrole metabolic process;0.00659370053925517!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00659370053925517!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00662778088834645!GO:0044262;cellular carbohydrate metabolic process;0.00668466997528847!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00668650657412228!GO:0015002;heme-copper terminal oxidase activity;0.00668650657412228!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00668650657412228!GO:0004129;cytochrome-c oxidase activity;0.00668650657412228!GO:0044433;cytoplasmic vesicle part;0.00670554123219807!GO:0046822;regulation of nucleocytoplasmic transport;0.00676468627928776!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00680438546543399!GO:0045047;protein targeting to ER;0.00680438546543399!GO:0000082;G1/S transition of mitotic cell cycle;0.00681175030105495!GO:0007021;tubulin folding;0.00698769127662423!GO:0000922;spindle pole;0.00705618220841434!GO:0000049;tRNA binding;0.00709020793937602!GO:0043022;ribosome binding;0.00713112544519023!GO:0019206;nucleoside kinase activity;0.00729344782845827!GO:0046983;protein dimerization activity;0.0074640937895442!GO:0006497;protein amino acid lipidation;0.0074640937895442!GO:0030125;clathrin vesicle coat;0.00748503969104077!GO:0030665;clathrin coated vesicle membrane;0.00748503969104077!GO:0006672;ceramide metabolic process;0.00768877729986865!GO:0043414;biopolymer methylation;0.00768877729986865!GO:0051539;4 iron, 4 sulfur cluster binding;0.00789473714944243!GO:0043130;ubiquitin binding;0.00790853020636774!GO:0032182;small conjugating protein binding;0.00790853020636774!GO:0030134;ER to Golgi transport vesicle;0.00803318609720951!GO:0043488;regulation of mRNA stability;0.00809766232747725!GO:0043487;regulation of RNA stability;0.00809766232747725!GO:0001726;ruffle;0.00835264325766569!GO:0000792;heterochromatin;0.00882165361396828!GO:0030133;transport vesicle;0.00882233530593615!GO:0046519;sphingoid metabolic process;0.00906929185029908!GO:0005791;rough endoplasmic reticulum;0.00929985438641211!GO:0016301;kinase activity;0.00929985438641211!GO:0006818;hydrogen transport;0.0093969437357299!GO:0015992;proton transport;0.00970218905639104!GO:0006595;polyamine metabolic process;0.00997575005903832!GO:0032259;methylation;0.0100263525487122!GO:0000725;recombinational repair;0.0101819012233743!GO:0000724;double-strand break repair via homologous recombination;0.0101819012233743!GO:0043433;negative regulation of transcription factor activity;0.0102444248528032!GO:0046966;thyroid hormone receptor binding;0.0103450468359527!GO:0008139;nuclear localization sequence binding;0.0103556208824179!GO:0008017;microtubule binding;0.0106773040174717!GO:0012506;vesicle membrane;0.0108245336068067!GO:0003746;translation elongation factor activity;0.010827313434273!GO:0006275;regulation of DNA replication;0.0108520789980454!GO:0031124;mRNA 3'-end processing;0.0110949776536461!GO:0008180;signalosome;0.0113082997031429!GO:0000209;protein polyubiquitination;0.0114868520754774!GO:0005832;chaperonin-containing T-complex;0.0115976955292287!GO:0007242;intracellular signaling cascade;0.0117365721722214!GO:0006376;mRNA splice site selection;0.0117374297064724!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0117374297064724!GO:0030119;AP-type membrane coat adaptor complex;0.0117518935120281!GO:0016584;nucleosome positioning;0.0117518935120281!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0117570017915872!GO:0051287;NAD binding;0.0120520980689355!GO:0030663;COPI coated vesicle membrane;0.0120520980689355!GO:0030126;COPI vesicle coat;0.0120520980689355!GO:0006519;amino acid and derivative metabolic process;0.0120520980689355!GO:0017166;vinculin binding;0.0120960162505228!GO:0005758;mitochondrial intermembrane space;0.0122111786395491!GO:0000781;chromosome, telomeric region;0.0122675454430884!GO:0009116;nucleoside metabolic process;0.0123319437283344!GO:0006730;one-carbon compound metabolic process;0.0123664845464749!GO:0008629;induction of apoptosis by intracellular signals;0.0129099869433192!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0130439003529443!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0131205887857566!GO:0009451;RNA modification;0.0131205887857566!GO:0009967;positive regulation of signal transduction;0.0131316676428091!GO:0030127;COPII vesicle coat;0.0132568266660992!GO:0012507;ER to Golgi transport vesicle membrane;0.0132568266660992!GO:0000096;sulfur amino acid metabolic process;0.0132581760108262!GO:0032984;macromolecular complex disassembly;0.0133182724564673!GO:0043601;nuclear replisome;0.013610311078461!GO:0030894;replisome;0.013610311078461!GO:0006378;mRNA polyadenylation;0.0138368837369403!GO:0009303;rRNA transcription;0.014311808504999!GO:0016790;thiolester hydrolase activity;0.0144363838335581!GO:0016407;acetyltransferase activity;0.0146303284970441!GO:0004518;nuclease activity;0.0148630383216155!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0149953117326205!GO:0044454;nuclear chromosome part;0.0150271190051047!GO:0048037;cofactor binding;0.0151110260837661!GO:0006767;water-soluble vitamin metabolic process;0.0151641016908217!GO:0043241;protein complex disassembly;0.0151641016908217!GO:0007034;vacuolar transport;0.0151841074059028!GO:0004527;exonuclease activity;0.0153938961190169!GO:0004003;ATP-dependent DNA helicase activity;0.0162349971039123!GO:0008538;proteasome activator activity;0.016290626978774!GO:0006518;peptide metabolic process;0.0163052473380788!GO:0043284;biopolymer biosynthetic process;0.0163052473380788!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.016436871362594!GO:0009262;deoxyribonucleotide metabolic process;0.0165062001699596!GO:0030131;clathrin adaptor complex;0.0170601149016473!GO:0043189;H4/H2A histone acetyltransferase complex;0.0177395743353226!GO:0000086;G2/M transition of mitotic cell cycle;0.0178717563289303!GO:0007004;telomere maintenance via telomerase;0.0182884306621071!GO:0030137;COPI-coated vesicle;0.0184382921307429!GO:0006506;GPI anchor biosynthetic process;0.0185926148483682!GO:0050681;androgen receptor binding;0.0186456488503922!GO:0016408;C-acyltransferase activity;0.0187134963723095!GO:0043154;negative regulation of caspase activity;0.0187758938821785!GO:0016791;phosphoric monoester hydrolase activity;0.0193207336724598!GO:0046982;protein heterodimerization activity;0.0199993843998277!GO:0050178;phenylpyruvate tautomerase activity;0.0203157742820032!GO:0031570;DNA integrity checkpoint;0.0205590122451753!GO:0008287;protein serine/threonine phosphatase complex;0.0206431225948208!GO:0030176;integral to endoplasmic reticulum membrane;0.0206543128406467!GO:0042168;heme metabolic process;0.0207445992943511!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.020835904186503!GO:0042158;lipoprotein biosynthetic process;0.0209089588653273!GO:0005669;transcription factor TFIID complex;0.0210441635543117!GO:0006405;RNA export from nucleus;0.0210692583615314!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0213320434774579!GO:0008415;acyltransferase activity;0.0215457058276619!GO:0042393;histone binding;0.02166840901437!GO:0000123;histone acetyltransferase complex;0.0223324390997756!GO:0006740;NADPH regeneration;0.0223324390997756!GO:0006098;pentose-phosphate shunt;0.0223324390997756!GO:0004680;casein kinase activity;0.0223549193320929!GO:0051338;regulation of transferase activity;0.0224931921982585!GO:0022411;cellular component disassembly;0.0224931921982585!GO:0003756;protein disulfide isomerase activity;0.0224931921982585!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0224931921982585!GO:0007030;Golgi organization and biogenesis;0.0225499977965963!GO:0019079;viral genome replication;0.0227370488479962!GO:0031577;spindle checkpoint;0.0231577104683347!GO:0008299;isoprenoid biosynthetic process;0.02325811075366!GO:0000339;RNA cap binding;0.0235038857649371!GO:0005869;dynactin complex;0.023643682213112!GO:0033673;negative regulation of kinase activity;0.023643682213112!GO:0006469;negative regulation of protein kinase activity;0.023643682213112!GO:0035267;NuA4 histone acetyltransferase complex;0.0237261833048514!GO:0031625;ubiquitin protein ligase binding;0.0239306484763672!GO:0005996;monosaccharide metabolic process;0.0241227769848256!GO:0006892;post-Golgi vesicle-mediated transport;0.0241227769848256!GO:0031970;organelle envelope lumen;0.0241696210343755!GO:0006417;regulation of translation;0.0245367938385539!GO:0006505;GPI anchor metabolic process;0.024776430782689!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0248536035391625!GO:0019318;hexose metabolic process;0.0249742348472969!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0252044521085551!GO:0019222;regulation of metabolic process;0.0253754011813345!GO:0016311;dephosphorylation;0.0257612724351367!GO:0008047;enzyme activator activity;0.0257915442584076!GO:0043549;regulation of kinase activity;0.0258455618495478!GO:0051881;regulation of mitochondrial membrane potential;0.0258803735685253!GO:0031901;early endosome membrane;0.026038630763157!GO:0000910;cytokinesis;0.0261269846552406!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0261269846552406!GO:0030518;steroid hormone receptor signaling pathway;0.0261269846552406!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0261269846552406!GO:0010257;NADH dehydrogenase complex assembly;0.0261269846552406!GO:0033108;mitochondrial respiratory chain complex assembly;0.0261269846552406!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0261694178288327!GO:0042769;DNA damage response, detection of DNA damage;0.0261776314247668!GO:0007265;Ras protein signal transduction;0.0265450972572856!GO:0051348;negative regulation of transferase activity;0.0266506367862377!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0268695230900132!GO:0030384;phosphoinositide metabolic process;0.0268695230900132!GO:0045892;negative regulation of transcription, DNA-dependent;0.027261426709106!GO:0006650;glycerophospholipid metabolic process;0.0277493523666998!GO:0048518;positive regulation of biological process;0.0277493523666998!GO:0016746;transferase activity, transferring acyl groups;0.0278119784115168!GO:0008601;protein phosphatase type 2A regulator activity;0.0283540536316279!GO:0031529;ruffle organization and biogenesis;0.0287201792223147!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0290122466427873!GO:0005784;translocon complex;0.02908497048095!GO:0032940;secretion by cell;0.0294429794331816!GO:0008625;induction of apoptosis via death domain receptors;0.0294746206426456!GO:0007041;lysosomal transport;0.0297676641711833!GO:0003887;DNA-directed DNA polymerase activity;0.0302095044876614!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0304932127321929!GO:0007040;lysosome organization and biogenesis;0.0310165399093468!GO:0006779;porphyrin biosynthetic process;0.0310509910777397!GO:0033014;tetrapyrrole biosynthetic process;0.0310509910777397!GO:0009124;nucleoside monophosphate biosynthetic process;0.0317681114934308!GO:0009123;nucleoside monophosphate metabolic process;0.0317681114934308!GO:0000819;sister chromatid segregation;0.0317707653233236!GO:0050811;GABA receptor binding;0.0318260367065763!GO:0016125;sterol metabolic process;0.0320026512177025!GO:0019783;small conjugating protein-specific protease activity;0.0329938952152888!GO:0045859;regulation of protein kinase activity;0.0334152540727987!GO:0003923;GPI-anchor transamidase activity;0.0337685872605772!GO:0016255;attachment of GPI anchor to protein;0.0337685872605772!GO:0042765;GPI-anchor transamidase complex;0.0337685872605772!GO:0006278;RNA-dependent DNA replication;0.0340509178111995!GO:0000070;mitotic sister chromatid segregation;0.0343182128868353!GO:0031123;RNA 3'-end processing;0.0345760393604975!GO:0044450;microtubule organizing center part;0.0346068370509982!GO:0006007;glucose catabolic process;0.0347652975814655!GO:0005881;cytoplasmic microtubule;0.0349189775171441!GO:0000152;nuclear ubiquitin ligase complex;0.0354457137230036!GO:0000159;protein phosphatase type 2A complex;0.0354457137230036!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0356327022078639!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0357638267946311!GO:0004532;exoribonuclease activity;0.0360364021950363!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0360364021950363!GO:0006118;electron transport;0.0360433673697051!GO:0030027;lamellipodium;0.036428074390502!GO:0004843;ubiquitin-specific protease activity;0.0367693550228207!GO:0051656;establishment of organelle localization;0.0367693550228207!GO:0030031;cell projection biogenesis;0.0368216383137635!GO:0005521;lamin binding;0.0371334410461959!GO:0016615;malate dehydrogenase activity;0.0379074295372269!GO:0000178;exosome (RNase complex);0.0379074295372269!GO:0031371;ubiquitin conjugating enzyme complex;0.0380332893341385!GO:0032507;maintenance of cellular protein localization;0.0388290738276018!GO:0006807;nitrogen compound metabolic process;0.0394009570033171!GO:0030496;midbody;0.0394060695384289!GO:0006338;chromatin remodeling;0.0407974434192106!GO:0046426;negative regulation of JAK-STAT cascade;0.0412897887098437!GO:0008537;proteasome activator complex;0.0416113004906789!GO:0006360;transcription from RNA polymerase I promoter;0.0419612467757912!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0420288305178237!GO:0006733;oxidoreduction coenzyme metabolic process;0.0424394273256814!GO:0044438;microbody part;0.0427520163735578!GO:0044439;peroxisomal part;0.0427520163735578!GO:0051223;regulation of protein transport;0.0429753291364935!GO:0046365;monosaccharide catabolic process;0.0429753291364935!GO:0005663;DNA replication factor C complex;0.043309332002345!GO:0006984;ER-nuclear signaling pathway;0.0433323357550541!GO:0051059;NF-kappaB binding;0.0437110743823683!GO:0000118;histone deacetylase complex;0.0443574365677591!GO:0016417;S-acyltransferase activity;0.0459064946749471!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0459064946749471!GO:0008426;protein kinase C inhibitor activity;0.0459064946749471!GO:0046112;nucleobase biosynthetic process;0.0459064946749471!GO:0006509;membrane protein ectodomain proteolysis;0.0459843120895235!GO:0033619;membrane protein proteolysis;0.0459843120895235!GO:0000726;non-recombinational repair;0.0462291658648455!GO:0031326;regulation of cellular biosynthetic process;0.0462933084835114!GO:0009218;pyrimidine ribonucleotide metabolic process;0.0484172352253908!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0491231852896329!GO:0042026;protein refolding;0.0491231852896329!GO:0005875;microtubule associated complex;0.0492789608836063!GO:0006769;nicotinamide metabolic process;0.0498167770263874!GO:0008333;endosome to lysosome transport;0.0498306216464374!GO:0030911;TPR domain binding;0.0498494415553653
|sample_id=10638
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=ovary
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10638-108I8;search_select_hide=table117:FF:10638-108I8
}}
}}

Latest revision as of 14:32, 3 June 2020

Name:clear cell carcinoma cell line:JHOC-5
Species:Human (Homo sapiens)
Library ID:CNhs11745
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexfemale
age54
cell typeunclassifiable
cell lineJHOC-5
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005922
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11745 CAGE DRX007860 DRR008732
Accession ID Hg19

Library idBAMCTSS
CNhs11745 DRZ000157 DRZ001542
Accession ID Hg38

Library idBAMCTSS
CNhs11745 DRZ011507 DRZ012892
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.18
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.436
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.101
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.286
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.223
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0831
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.547
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.355
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0831
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0.0831
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.519
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0831
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.266
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0831
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11745

Jaspar motifP-value
MA0002.20.154
MA0003.10.252
MA0004.10.64
MA0006.10.957
MA0007.10.465
MA0009.10.847
MA0014.10.0984
MA0017.10.502
MA0018.20.00341
MA0019.10.326
MA0024.18.26515e-4
MA0025.10.582
MA0027.10.929
MA0028.10.0501
MA0029.10.84
MA0030.10.0468
MA0031.10.0436
MA0035.20.661
MA0038.10.687
MA0039.20.444
MA0040.10.0879
MA0041.10.0871
MA0042.10.101
MA0043.10.101
MA0046.12.11548e-7
MA0047.20.19
MA0048.10.0753
MA0050.10.295
MA0051.10.677
MA0052.11.82554e-4
MA0055.19.56737e-4
MA0057.10.484
MA0058.10.455
MA0059.10.286
MA0060.10.271
MA0061.10.00281
MA0062.20.759
MA0065.20.0605
MA0066.10.43
MA0067.10.11
MA0068.10.00748
MA0069.10.644
MA0070.10.85
MA0071.10.187
MA0072.10.88
MA0073.10.784
MA0074.10.458
MA0076.10.321
MA0077.10.298
MA0078.10.299
MA0079.20.243
MA0080.22.40051e-7
MA0081.10.0386
MA0083.13.40321e-4
MA0084.10.572
MA0087.10.337
MA0088.10.0147
MA0090.10.253
MA0091.10.137
MA0092.10.271
MA0093.10.613
MA0099.20.843
MA0100.10.198
MA0101.10.00949
MA0102.20.0887
MA0103.14.81465e-6
MA0104.20.209
MA0105.12.47323e-4
MA0106.10.0356
MA0107.10.0268
MA0108.24.85898e-9
MA0111.10.333
MA0112.20.251
MA0113.10.15
MA0114.10.191
MA0115.10.408
MA0116.10.00857
MA0117.10.315
MA0119.10.653
MA0122.10.728
MA0124.10.171
MA0125.10.583
MA0131.10.532
MA0135.10.0739
MA0136.11.54968e-6
MA0137.20.226
MA0138.20.0385
MA0139.10.00149
MA0140.10.289
MA0141.10.195
MA0142.10.716
MA0143.10.322
MA0144.10.395
MA0145.10.738
MA0146.10.605
MA0147.10.104
MA0148.10.944
MA0149.10.011
MA0150.10.966
MA0152.10.626
MA0153.15.40342e-12
MA0154.10.343
MA0155.10.801
MA0156.17.77035e-4
MA0157.10.0202
MA0159.10.0925
MA0160.10.603
MA0162.10.182
MA0163.10.0651
MA0164.10.878
MA0258.10.382
MA0259.10.325



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11745

Novel motifP-value
10.0898
100.111
1000.00105
1010.178
1020.638
1030.411
1040.962
1050.143
1060.701
1070.276
1080.534
1090.0551
110.163
1100.0531
1110.15
1120.5
1130.0218
1140.84
1150.336
1160.39
1170.154
1180.0148
1190.159
120.324
1200.0979
1210.54
1220.263
1230.557
1240.286
1250.272
1260.4
1270.77
1280.766
1290.272
138.78508e-4
1300.806
1310.931
1320.852
1330.113
1340.104
1350.0204
1360.0104
1370.349
1380.777
1390.0936
140.728
1400.788
1410.675
1420.807
1430.0422
1440.925
1450.5
1460.236
1470.94
1480.569
1490.711
150.306
1500.603
1510.8
1520.327
1530.775
1540.404
1550.924
1560.971
1570.426
1580.178
1590.188
160.308
1600.159
1610.58
1620.69
1630.876
1640.0142
1650.826
1660.996
1670.189
1680.8
1690.8
170.931
180.959
190.914
20.205
200.0313
210.108
220.307
230.878
240.446
250.983
260.0271
270.352
280.711
290.0269
30.503
300.882
310.46
320.337
330.0474
340.0928
350.907
360.123
370.12
380.696
390.509
40.996
400.0222
410.027
420.548
430.964
440.023
450.34
460.419
470.145
480.0763
490.424
50.731
500.628
510.868
520.437
530.315
540.741
550.697
560.757
570.354
580.683
590.722
60.339
600.674
610.627
620.732
630.461
640.526
650.975
660.515
670.906
680.98
690.518
70.63
700.275
710.169
720.264
730.863
740.559
750.0979
760.174
770.317
780.119
790.843
80.457
800.00174
810.714
820.445
830.904
840.902
850.372
860.587
870.0898
880.498
890.923
90.0955
900.208
910.177
920.993
930.38
940.286
950.229
960.769
970.787
980.511
990.362



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11745


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
4468 (clear cell adenocarcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0102787 (clear cell adenocarcinoma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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