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{{f5samples
{{f5samples
|id=FF:10758-110E2
|DRA_sample_Accession=CAGE@SAMD00005908
|name=fibrosarcoma cell line:HT-1080, biol_rep1
|accession_numbers=CAGE;DRX007886;DRR008758;DRZ000183;DRZ001568;DRZ011533;DRZ012918
|sample_id=10758
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=110E2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057
|rna_box=110
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115
|rna_position=E2
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0100460,FF:0101282
|sample_cell_lot=
|comment=
|sample_cell_catalog=ifo50354
|created_by=
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000134
|sample_tissue=pelvis
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=35
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.15000
|rna_od260/280=2.10000
|sample_cell_type=unclassifiable
|sample_cell_line=HT-1080
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=fibrosarcoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=44.31240
|rna_concentration=0.98472
|sample_note=
|profile_hcage=CNhs11860,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:4
|sample_description=
 
|fonse_cell_line=FF:0100400,FF:0100453
|fonse_cell_line=FF:0100400,FF:0100453
|fonse_cell_line_closure=FF:0100400,FF:0100453
|fonse_cell_line_closure=FF:0100400,FF:0100453
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg38.nobarcode.ctss.bed.gz
|id=FF:10758-110E2
|is_a=EFO:0002091;;FF:0000210;;FF:0101282
|is_obsolete=
|library_id=CNhs11860
|library_id_phase_based=2:CNhs11860
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10758
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10758
|name=fibrosarcoma cell line:HT-1080
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11860,LSID830,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=110
|rna_catalog_number=
|rna_concentration=0.98472
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.15
|rna_od260/280=2.1
|rna_position=E2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.10E+04
|rna_weight_ug=44.3124
|sample_age=35
|sample_category=cell lines
|sample_cell_catalog=ifo50354
|sample_cell_line=HT-1080
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|sample_description=
|sample_dev_stage=
|sample_disease=fibrosarcoma
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.33657783214288e-249!GO:0043226;organelle;5.26606549277387e-207!GO:0043229;intracellular organelle;1.89788300871021e-206!GO:0043231;intracellular membrane-bound organelle;6.55291907103548e-204!GO:0043227;membrane-bound organelle;8.47294768781974e-204!GO:0005737;cytoplasm;1.32693525953615e-179!GO:0044422;organelle part;2.78019873745591e-160!GO:0044446;intracellular organelle part;1.00060193897981e-158!GO:0044444;cytoplasmic part;1.07263491873926e-125!GO:0032991;macromolecular complex;2.1215136032538e-117!GO:0030529;ribonucleoprotein complex;2.95659990377158e-100!GO:0044237;cellular metabolic process;1.57871968439933e-93!GO:0044238;primary metabolic process;5.92085573696354e-92!GO:0044428;nuclear part;9.9128766970283e-92!GO:0005634;nucleus;1.29177641020025e-91!GO:0043170;macromolecule metabolic process;4.49988720398588e-89!GO:0043233;organelle lumen;1.30372760080488e-88!GO:0031974;membrane-enclosed lumen;1.30372760080488e-88!GO:0003723;RNA binding;2.2012699565955e-84!GO:0005515;protein binding;1.80855569614671e-79!GO:0005739;mitochondrion;1.70160802015038e-68!GO:0043234;protein complex;1.80201375735169e-59!GO:0005840;ribosome;1.21833308365005e-58!GO:0006396;RNA processing;6.59501147304993e-58!GO:0006412;translation;3.96907025060236e-57!GO:0031981;nuclear lumen;1.22488168013942e-56!GO:0043283;biopolymer metabolic process;1.94384835655915e-54!GO:0016043;cellular component organization and biogenesis;1.11423899061574e-53!GO:0019538;protein metabolic process;3.58134986541342e-53!GO:0003735;structural constituent of ribosome;2.12629557028172e-51!GO:0031090;organelle membrane;3.01986896873842e-50!GO:0044260;cellular macromolecule metabolic process;5.60003171115023e-48!GO:0010467;gene expression;7.35606355855931e-48!GO:0044267;cellular protein metabolic process;8.41461670353788e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.34263145532485e-45!GO:0044429;mitochondrial part;1.81289363410598e-44!GO:0033279;ribosomal subunit;7.32905997201237e-44!GO:0033036;macromolecule localization;2.35906901951e-43!GO:0044249;cellular biosynthetic process;4.9180218496638e-43!GO:0015031;protein transport;8.91770371163104e-43!GO:0009059;macromolecule biosynthetic process;9.83283424696941e-43!GO:0009058;biosynthetic process;1.10697135902242e-42!GO:0031967;organelle envelope;1.65952206414616e-42!GO:0031975;envelope;2.36479229156286e-42!GO:0016071;mRNA metabolic process;6.13240421899039e-42!GO:0043228;non-membrane-bound organelle;4.1160839156737e-40!GO:0043232;intracellular non-membrane-bound organelle;4.1160839156737e-40!GO:0008380;RNA splicing;4.6570101970082e-40!GO:0008104;protein localization;1.03453347843599e-39!GO:0045184;establishment of protein localization;1.14806759682766e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.36583959270142e-39!GO:0005829;cytosol;1.00781796261452e-38!GO:0046907;intracellular transport;1.72303488496058e-37!GO:0006397;mRNA processing;3.33672364227715e-37!GO:0006996;organelle organization and biogenesis;5.15997194395829e-37!GO:0006259;DNA metabolic process;4.96559032302365e-36!GO:0005654;nucleoplasm;8.50378630015639e-35!GO:0065003;macromolecular complex assembly;1.90114032944563e-33!GO:0006886;intracellular protein transport;1.48617273386976e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.58411375434686e-31!GO:0007049;cell cycle;4.97060285068494e-30!GO:0005681;spliceosome;1.52715305148456e-29!GO:0022607;cellular component assembly;2.541408430195e-29!GO:0000166;nucleotide binding;4.12920214110753e-29!GO:0003676;nucleic acid binding;5.21009826200068e-29!GO:0044451;nucleoplasm part;2.69542808124906e-28!GO:0005740;mitochondrial envelope;3.48461263380186e-28!GO:0031966;mitochondrial membrane;2.39256078953869e-26!GO:0019866;organelle inner membrane;3.1217228522258e-26!GO:0044445;cytosolic part;1.31733667347271e-25!GO:0051649;establishment of cellular localization;1.4354764508128e-24!GO:0006974;response to DNA damage stimulus;2.01125363067738e-24!GO:0051641;cellular localization;2.20605422119778e-24!GO:0016462;pyrophosphatase activity;2.75435334127528e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.93822680509864e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;6.77232388392296e-24!GO:0005743;mitochondrial inner membrane;6.77232388392296e-24!GO:0015935;small ribosomal subunit;8.6021786218119e-24!GO:0017111;nucleoside-triphosphatase activity;2.15757038754125e-23!GO:0022402;cell cycle process;3.10001028239653e-23!GO:0005730;nucleolus;4.47624164418432e-23!GO:0006119;oxidative phosphorylation;6.06133003713838e-23!GO:0012505;endomembrane system;5.03621000806315e-22!GO:0000278;mitotic cell cycle;1.52953303272518e-21!GO:0015934;large ribosomal subunit;2.80783726003492e-21!GO:0044455;mitochondrial membrane part;3.14703795706567e-21!GO:0022618;protein-RNA complex assembly;8.85037353776642e-21!GO:0016874;ligase activity;2.25284137498117e-20!GO:0006281;DNA repair;2.92585871341568e-20!GO:0016070;RNA metabolic process;3.23918955535962e-20!GO:0032553;ribonucleotide binding;3.23918955535962e-20!GO:0032555;purine ribonucleotide binding;3.23918955535962e-20!GO:0017076;purine nucleotide binding;3.82554794071772e-20!GO:0006457;protein folding;7.54583381424914e-20!GO:0006512;ubiquitin cycle;1.35980427101407e-19!GO:0031980;mitochondrial lumen;2.10425448329375e-19!GO:0005759;mitochondrial matrix;2.10425448329375e-19!GO:0042254;ribosome biogenesis and assembly;2.50055686145648e-19!GO:0008135;translation factor activity, nucleic acid binding;6.78697494755331e-19!GO:0005694;chromosome;8.00878445849474e-19!GO:0044265;cellular macromolecule catabolic process;1.39169478423854e-18!GO:0043285;biopolymer catabolic process;1.23680771838733e-17!GO:0006605;protein targeting;1.58264949098214e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.65016485676386e-17!GO:0006260;DNA replication;1.71699393264785e-17!GO:0008134;transcription factor binding;1.98444917482858e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.06455062157056e-17!GO:0019941;modification-dependent protein catabolic process;2.12781647234104e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.12781647234104e-17!GO:0005524;ATP binding;2.45970615027647e-17!GO:0005746;mitochondrial respiratory chain;2.587856843398e-17!GO:0005761;mitochondrial ribosome;2.6699037012863e-17!GO:0000313;organellar ribosome;2.6699037012863e-17!GO:0044257;cellular protein catabolic process;5.09878189655522e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.69804981483914e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.01679969595811e-17!GO:0009719;response to endogenous stimulus;6.26836111514844e-17!GO:0044427;chromosomal part;6.94477845476592e-17!GO:0043412;biopolymer modification;6.99671286550792e-17!GO:0032559;adenyl ribonucleotide binding;8.09974653893866e-17!GO:0030554;adenyl nucleotide binding;1.37711813137817e-16!GO:0009057;macromolecule catabolic process;1.57236513028965e-16!GO:0048770;pigment granule;1.58450006629421e-16!GO:0042470;melanosome;1.58450006629421e-16!GO:0005783;endoplasmic reticulum;1.79525549392517e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.97426822338156e-16!GO:0022403;cell cycle phase;3.45568469150661e-16!GO:0044432;endoplasmic reticulum part;7.43812692287617e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.20851499252934e-15!GO:0003954;NADH dehydrogenase activity;1.20851499252934e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.20851499252934e-15!GO:0051301;cell division;1.5539853644521e-15!GO:0000087;M phase of mitotic cell cycle;2.5938049475401e-15!GO:0051186;cofactor metabolic process;4.00726504921615e-15!GO:0007067;mitosis;4.50256045909928e-15!GO:0005635;nuclear envelope;4.90957027980512e-15!GO:0030163;protein catabolic process;6.06325499915746e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.93093467535851e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.66708966593818e-15!GO:0000375;RNA splicing, via transesterification reactions;7.66708966593818e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.66708966593818e-15!GO:0006464;protein modification process;8.6347157823213e-15!GO:0051276;chromosome organization and biogenesis;1.84554149860662e-14!GO:0031965;nuclear membrane;2.13940568522974e-14!GO:0044248;cellular catabolic process;2.21991042907608e-14!GO:0003743;translation initiation factor activity;2.36033479084834e-14!GO:0044453;nuclear membrane part;3.36000601048146e-14!GO:0051082;unfolded protein binding;3.41729934648459e-14!GO:0016604;nuclear body;4.44997175669393e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.66094533868776e-14!GO:0042773;ATP synthesis coupled electron transport;5.66094533868776e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.23254406794963e-13!GO:0045271;respiratory chain complex I;1.23254406794963e-13!GO:0005747;mitochondrial respiratory chain complex I;1.23254406794963e-13!GO:0016887;ATPase activity;1.68234674434234e-13!GO:0048193;Golgi vesicle transport;2.39089255299668e-13!GO:0042623;ATPase activity, coupled;3.5702913999772e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.80429028207637e-13!GO:0005794;Golgi apparatus;4.54906214544066e-13!GO:0006413;translational initiation;5.67568843370083e-13!GO:0006364;rRNA processing;7.84636014771899e-13!GO:0000074;regulation of progression through cell cycle;8.44350633138306e-13!GO:0000279;M phase;1.01194583788437e-12!GO:0051726;regulation of cell cycle;1.10161524154869e-12!GO:0006913;nucleocytoplasmic transport;1.23366981701696e-12!GO:0043687;post-translational protein modification;1.62341717198535e-12!GO:0016072;rRNA metabolic process;1.7134579910434e-12!GO:0006399;tRNA metabolic process;1.72266216983124e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.09623926257223e-12!GO:0051169;nuclear transport;2.98338409299448e-12!GO:0006732;coenzyme metabolic process;3.39950655112578e-12!GO:0003712;transcription cofactor activity;5.33854338211926e-12!GO:0012501;programmed cell death;5.7713685024521e-12!GO:0065002;intracellular protein transport across a membrane;8.02176958319137e-12!GO:0006915;apoptosis;1.06366372564242e-11!GO:0005643;nuclear pore;1.20894476129002e-11!GO:0004386;helicase activity;1.76209490046938e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.84982720373916e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.27699993740979e-11!GO:0008639;small protein conjugating enzyme activity;3.29642987327573e-11!GO:0016192;vesicle-mediated transport;4.33284719801582e-11!GO:0005789;endoplasmic reticulum membrane;5.1231802256467e-11!GO:0004842;ubiquitin-protein ligase activity;7.19581119039587e-11!GO:0006323;DNA packaging;7.30903115076743e-11!GO:0050657;nucleic acid transport;7.65137511915854e-11!GO:0051236;establishment of RNA localization;7.65137511915854e-11!GO:0050658;RNA transport;7.65137511915854e-11!GO:0006403;RNA localization;8.59658867108193e-11!GO:0006446;regulation of translational initiation;9.06596347705536e-11!GO:0006366;transcription from RNA polymerase II promoter;9.28043302578086e-11!GO:0005793;ER-Golgi intermediate compartment;9.45302690238559e-11!GO:0016607;nuclear speck;1.00282894137816e-10!GO:0017038;protein import;1.16993399159072e-10!GO:0008219;cell death;1.3162875066829e-10!GO:0016265;death;1.3162875066829e-10!GO:0009259;ribonucleotide metabolic process;1.46783781437225e-10!GO:0019787;small conjugating protein ligase activity;3.26467911481043e-10!GO:0009055;electron carrier activity;4.46761453712978e-10!GO:0008026;ATP-dependent helicase activity;4.5287843115995e-10!GO:0006163;purine nucleotide metabolic process;4.64797039402835e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.65472479850996e-10!GO:0006461;protein complex assembly;5.07983191078041e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.18989148654057e-09!GO:0008565;protein transporter activity;1.36775784652629e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.37268550091829e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.37268550091829e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.37268550091829e-09!GO:0046930;pore complex;1.43262354873143e-09!GO:0006164;purine nucleotide biosynthetic process;2.28313121641503e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.39775323897168e-09!GO:0009260;ribonucleotide biosynthetic process;2.41981491070791e-09!GO:0043038;amino acid activation;3.16427175389494e-09!GO:0006418;tRNA aminoacylation for protein translation;3.16427175389494e-09!GO:0043039;tRNA aminoacylation;3.16427175389494e-09!GO:0009150;purine ribonucleotide metabolic process;3.4083523648218e-09!GO:0051028;mRNA transport;4.39369300964023e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.42839765687767e-09!GO:0016779;nucleotidyltransferase activity;4.75545962905817e-09!GO:0043566;structure-specific DNA binding;4.95693369023433e-09!GO:0016881;acid-amino acid ligase activity;5.13737041155453e-09!GO:0051188;cofactor biosynthetic process;5.51768589015159e-09!GO:0005667;transcription factor complex;8.30072556189084e-09!GO:0007005;mitochondrion organization and biogenesis;8.54037721649693e-09!GO:0003697;single-stranded DNA binding;9.51620666318713e-09!GO:0000785;chromatin;1.21684454823775e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.33417611248599e-08!GO:0016740;transferase activity;1.34780211150492e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.63162279378111e-08!GO:0015986;ATP synthesis coupled proton transport;2.32995425187784e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.32995425187784e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.57704731277739e-08!GO:0006261;DNA-dependent DNA replication;3.31914921068636e-08!GO:0009056;catabolic process;3.65297068239407e-08!GO:0048523;negative regulation of cellular process;3.95712039259094e-08!GO:0016568;chromatin modification;4.64068733159272e-08!GO:0032446;protein modification by small protein conjugation;6.45662386334248e-08!GO:0009060;aerobic respiration;8.20033000929863e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.2879208905351e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.65452938904263e-08!GO:0016567;protein ubiquitination;9.22748031555212e-08!GO:0065004;protein-DNA complex assembly;1.02170780359228e-07!GO:0009141;nucleoside triphosphate metabolic process;1.04258098731472e-07!GO:0003899;DNA-directed RNA polymerase activity;1.05575538920609e-07!GO:0005768;endosome;1.10320790397919e-07!GO:0051246;regulation of protein metabolic process;1.25242050153457e-07!GO:0050794;regulation of cellular process;1.60661947222115e-07!GO:0000245;spliceosome assembly;1.75365070774128e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.83973303493021e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.83973303493021e-07!GO:0019829;cation-transporting ATPase activity;2.03389948768093e-07!GO:0043623;cellular protein complex assembly;2.03389948768093e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.06914471794812e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.06914471794812e-07!GO:0046034;ATP metabolic process;2.2551136100867e-07!GO:0003924;GTPase activity;2.32292365502444e-07!GO:0006333;chromatin assembly or disassembly;2.39493458599348e-07!GO:0005788;endoplasmic reticulum lumen;2.440169365279e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.86857923811832e-07!GO:0045333;cellular respiration;2.91785417617309e-07!GO:0009108;coenzyme biosynthetic process;3.42191327383542e-07!GO:0006754;ATP biosynthetic process;4.02666105308553e-07!GO:0006753;nucleoside phosphate metabolic process;4.02666105308553e-07!GO:0044431;Golgi apparatus part;4.09922185007957e-07!GO:0043067;regulation of programmed cell death;4.18211826194267e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.47214531013318e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.47214531013318e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.38166421645049e-07!GO:0006752;group transfer coenzyme metabolic process;5.43346602756607e-07!GO:0042981;regulation of apoptosis;5.72942269832054e-07!GO:0051329;interphase of mitotic cell cycle;5.78940477856098e-07!GO:0000775;chromosome, pericentric region;6.02785571640538e-07!GO:0030120;vesicle coat;6.6502163935676e-07!GO:0030662;coated vesicle membrane;6.6502163935676e-07!GO:0015630;microtubule cytoskeleton;6.69668110191871e-07!GO:0006606;protein import into nucleus;6.94891604218618e-07!GO:0048519;negative regulation of biological process;7.60843254929226e-07!GO:0016787;hydrolase activity;8.26789481867453e-07!GO:0048475;coated membrane;9.66881085057874e-07!GO:0030117;membrane coat;9.66881085057874e-07!GO:0016563;transcription activator activity;9.72144218149768e-07!GO:0051170;nuclear import;1.01694530152318e-06!GO:0051325;interphase;1.09017616161572e-06!GO:0003714;transcription corepressor activity;1.09017616161572e-06!GO:0009117;nucleotide metabolic process;1.09017616161572e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.16113867659897e-06!GO:0045259;proton-transporting ATP synthase complex;1.18826852547007e-06!GO:0006099;tricarboxylic acid cycle;1.20163972000485e-06!GO:0046356;acetyl-CoA catabolic process;1.20163972000485e-06!GO:0005819;spindle;1.36371849341226e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.64497232180393e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.97123534496004e-06!GO:0006793;phosphorus metabolic process;2.63898539167857e-06!GO:0006796;phosphate metabolic process;2.63898539167857e-06!GO:0004298;threonine endopeptidase activity;2.68638777563996e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.28524946967616e-06!GO:0005657;replication fork;3.83564650069927e-06!GO:0000151;ubiquitin ligase complex;3.92165345826949e-06!GO:0006084;acetyl-CoA metabolic process;4.24886261074298e-06!GO:0005762;mitochondrial large ribosomal subunit;4.24886261074298e-06!GO:0000315;organellar large ribosomal subunit;4.24886261074298e-06!GO:0005525;GTP binding;4.35365212472546e-06!GO:0043069;negative regulation of programmed cell death;4.37763866755898e-06!GO:0009109;coenzyme catabolic process;4.85526072480866e-06!GO:0008094;DNA-dependent ATPase activity;5.59389869638952e-06!GO:0016564;transcription repressor activity;5.67638454429689e-06!GO:0045786;negative regulation of progression through cell cycle;6.05248712440622e-06!GO:0007051;spindle organization and biogenesis;6.63076521012421e-06!GO:0000314;organellar small ribosomal subunit;6.99139363695e-06!GO:0005763;mitochondrial small ribosomal subunit;6.99139363695e-06!GO:0006613;cotranslational protein targeting to membrane;7.67293350654009e-06!GO:0003724;RNA helicase activity;8.00217791287949e-06!GO:0051187;cofactor catabolic process;8.68060181183017e-06!GO:0031252;leading edge;9.98351502520262e-06!GO:0043066;negative regulation of apoptosis;1.17821451627041e-05!GO:0003713;transcription coactivator activity;1.22469544564846e-05!GO:0000075;cell cycle checkpoint;1.28545285158952e-05!GO:0000139;Golgi membrane;1.47116870155022e-05!GO:0044452;nucleolar part;1.53307676797623e-05!GO:0044440;endosomal part;1.64769627199434e-05!GO:0010008;endosome membrane;1.64769627199434e-05!GO:0005813;centrosome;2.36649122309827e-05!GO:0051427;hormone receptor binding;2.52367337923816e-05!GO:0016310;phosphorylation;2.92892166059286e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.12843397532139e-05!GO:0006916;anti-apoptosis;3.2283679382384e-05!GO:0051168;nuclear export;3.29164587991582e-05!GO:0016363;nuclear matrix;3.44454110038013e-05!GO:0006334;nucleosome assembly;3.6202435499449e-05!GO:0043021;ribonucleoprotein binding;3.77351094833794e-05!GO:0032561;guanyl ribonucleotide binding;3.91521945159932e-05!GO:0019001;guanyl nucleotide binding;3.91521945159932e-05!GO:0006414;translational elongation;3.96131689344777e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.00080644974245e-05!GO:0005770;late endosome;4.13867717219374e-05!GO:0005815;microtubule organizing center;4.42059535680237e-05!GO:0019899;enzyme binding;4.42910443864013e-05!GO:0006626;protein targeting to mitochondrion;4.61053927556602e-05!GO:0003690;double-stranded DNA binding;4.71900249995298e-05!GO:0019843;rRNA binding;4.77336891043076e-05!GO:0031324;negative regulation of cellular metabolic process;5.13871434795228e-05!GO:0030867;rough endoplasmic reticulum membrane;5.23196096379408e-05!GO:0035257;nuclear hormone receptor binding;5.41319560069183e-05!GO:0043681;protein import into mitochondrion;5.42336562783515e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.28900055576753e-05!GO:0050789;regulation of biological process;7.40659806796724e-05!GO:0031497;chromatin assembly;7.43996931275313e-05!GO:0045454;cell redox homeostasis;9.50837062527338e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.96707945258729e-05!GO:0008033;tRNA processing;0.000101543846688633!GO:0030880;RNA polymerase complex;0.000105507203779595!GO:0048522;positive regulation of cellular process;0.000106489148245117!GO:0005798;Golgi-associated vesicle;0.000111558757029411!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000116128783727609!GO:0008654;phospholipid biosynthetic process;0.000116386847334119!GO:0016853;isomerase activity;0.00011740971801269!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000117875993976486!GO:0007010;cytoskeleton organization and biogenesis;0.00014058588363176!GO:0048471;perinuclear region of cytoplasm;0.000145418634487086!GO:0006302;double-strand break repair;0.000157986572085381!GO:0008186;RNA-dependent ATPase activity;0.000170238569725878!GO:0006612;protein targeting to membrane;0.000175318480221882!GO:0003684;damaged DNA binding;0.000193003471078372!GO:0019867;outer membrane;0.000197046055934089!GO:0051052;regulation of DNA metabolic process;0.000229950457501502!GO:0030036;actin cytoskeleton organization and biogenesis;0.000233621125809934!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000234354486991909!GO:0000428;DNA-directed RNA polymerase complex;0.000234354486991909!GO:0005769;early endosome;0.000245063824442934!GO:0007006;mitochondrial membrane organization and biogenesis;0.000249710947912367!GO:0006839;mitochondrial transport;0.000257127325569575!GO:0000082;G1/S transition of mitotic cell cycle;0.000274992906475759!GO:0031968;organelle outer membrane;0.000275791847023171!GO:0019222;regulation of metabolic process;0.000279411661610091!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000281243404345265!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00029952463333338!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000312487238828675!GO:0004527;exonuclease activity;0.000315742893535147!GO:0016859;cis-trans isomerase activity;0.000319220007879252!GO:0003682;chromatin binding;0.000333451391880557!GO:0031988;membrane-bound vesicle;0.000361693049317058!GO:0000049;tRNA binding;0.000370611039065607!GO:0003729;mRNA binding;0.000410795999324343!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000412000644370075!GO:0004576;oligosaccharyl transferase activity;0.000422685410172286!GO:0005885;Arp2/3 protein complex;0.000423449431919971!GO:0016023;cytoplasmic membrane-bound vesicle;0.000436714752827883!GO:0046483;heterocycle metabolic process;0.000471282054246288!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000475243728475105!GO:0008250;oligosaccharyl transferase complex;0.000478036997291704!GO:0004004;ATP-dependent RNA helicase activity;0.000491416556358127!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00050977158719904!GO:0000059;protein import into nucleus, docking;0.000510547525847917!GO:0005048;signal sequence binding;0.000510547525847917!GO:0009165;nucleotide biosynthetic process;0.000527747126867779!GO:0046474;glycerophospholipid biosynthetic process;0.000537064954751654!GO:0001726;ruffle;0.000548777186173072!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000548879247380282!GO:0007088;regulation of mitosis;0.000612982327071836!GO:0046489;phosphoinositide biosynthetic process;0.000640343743474817!GO:0008361;regulation of cell size;0.000673870092637049!GO:0005905;coated pit;0.000673996011448134!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000685215496141405!GO:0033116;ER-Golgi intermediate compartment membrane;0.000685322710047265!GO:0000776;kinetochore;0.000685801494449771!GO:0009112;nucleobase metabolic process;0.000689984064279823!GO:0006383;transcription from RNA polymerase III promoter;0.000737815055390353!GO:0015980;energy derivation by oxidation of organic compounds;0.00073969674943197!GO:0005741;mitochondrial outer membrane;0.000902494410602622!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000912778604205312!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000912778604205312!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000912778604205312!GO:0008022;protein C-terminus binding;0.000938589860690505!GO:0051252;regulation of RNA metabolic process;0.000945156441941794!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00101587704902652!GO:0007093;mitotic cell cycle checkpoint;0.00110171876158511!GO:0016049;cell growth;0.00114632277137722!GO:0016741;transferase activity, transferring one-carbon groups;0.00115661842771819!GO:0006352;transcription initiation;0.00115661842771819!GO:0008168;methyltransferase activity;0.00115862760163803!GO:0009892;negative regulation of metabolic process;0.00115862760163803!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00119412234288775!GO:0015399;primary active transmembrane transporter activity;0.00119412234288775!GO:0016491;oxidoreductase activity;0.00122142770606813!GO:0018196;peptidyl-asparagine modification;0.00122994557616492!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00122994557616492!GO:0016481;negative regulation of transcription;0.00123791874973301!GO:0003746;translation elongation factor activity;0.00133660420776338!GO:0003678;DNA helicase activity;0.00134605030961042!GO:0006310;DNA recombination;0.00134614295265411!GO:0048500;signal recognition particle;0.0013790443552335!GO:0006497;protein amino acid lipidation;0.00138762071352592!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00143533768241542!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00145496714718354!GO:0042802;identical protein binding;0.00148418670121818!GO:0005684;U2-dependent spliceosome;0.00148418670121818!GO:0006091;generation of precursor metabolites and energy;0.00149544824135935!GO:0031072;heat shock protein binding;0.0015163385445658!GO:0007052;mitotic spindle organization and biogenesis;0.00153695962341804!GO:0032508;DNA duplex unwinding;0.0015678694264627!GO:0032392;DNA geometric change;0.0015678694264627!GO:0030029;actin filament-based process;0.00169192052101182!GO:0016251;general RNA polymerase II transcription factor activity;0.00179861738151972!GO:0008312;7S RNA binding;0.00194993082021563!GO:0051920;peroxiredoxin activity;0.00207907682650023!GO:0007243;protein kinase cascade;0.00212146166260754!GO:0005637;nuclear inner membrane;0.00216540393042795!GO:0006891;intra-Golgi vesicle-mediated transport;0.00219630318385254!GO:0004674;protein serine/threonine kinase activity;0.00220691319228863!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00221979543433813!GO:0030663;COPI coated vesicle membrane;0.00237847610733787!GO:0030126;COPI vesicle coat;0.00237847610733787!GO:0007059;chromosome segregation;0.00242036006662146!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00242036006662146!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00242036006662146!GO:0006401;RNA catabolic process;0.00243070375649945!GO:0043284;biopolymer biosynthetic process;0.00244093296344747!GO:0006268;DNA unwinding during replication;0.00268514009332956!GO:0045893;positive regulation of transcription, DNA-dependent;0.00282996251548048!GO:0016044;membrane organization and biogenesis;0.00289623708576809!GO:0000287;magnesium ion binding;0.00293433540431538!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00306314691711327!GO:0045047;protein targeting to ER;0.00306314691711327!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00309835854768541!GO:0035258;steroid hormone receptor binding;0.00309835854768541!GO:0006506;GPI anchor biosynthetic process;0.00311822863454593!GO:0051539;4 iron, 4 sulfur cluster binding;0.00312486640674102!GO:0030132;clathrin coat of coated pit;0.00335242808833562!GO:0001558;regulation of cell growth;0.00336210697755105!GO:0006402;mRNA catabolic process;0.00354561747292343!GO:0031982;vesicle;0.0035837849409975!GO:0006650;glycerophospholipid metabolic process;0.00363928064756905!GO:0030521;androgen receptor signaling pathway;0.0036831957220704!GO:0043022;ribosome binding;0.00378190834687584!GO:0046467;membrane lipid biosynthetic process;0.00378190834687584!GO:0004532;exoribonuclease activity;0.00378190834687584!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00378190834687584!GO:0051087;chaperone binding;0.00386060200000747!GO:0045941;positive regulation of transcription;0.00387159386607838!GO:0030176;integral to endoplasmic reticulum membrane;0.00398214241154398!GO:0008092;cytoskeletal protein binding;0.00398214241154398!GO:0006611;protein export from nucleus;0.00410026877036927!GO:0051540;metal cluster binding;0.00415849457938471!GO:0051536;iron-sulfur cluster binding;0.00415849457938471!GO:0006505;GPI anchor metabolic process;0.00419938517920749!GO:0006595;polyamine metabolic process;0.00425822428417031!GO:0030137;COPI-coated vesicle;0.0044099419301983!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00444136395358916!GO:0006144;purine base metabolic process;0.00451960299481079!GO:0006289;nucleotide-excision repair;0.00459101845658148!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0046142937487117!GO:0000339;RNA cap binding;0.00466687847873551!GO:0043596;nuclear replication fork;0.00467357200184523!GO:0031410;cytoplasmic vesicle;0.00486915495711209!GO:0042158;lipoprotein biosynthetic process;0.00487896604915483!GO:0003711;transcription elongation regulator activity;0.00487896604915483!GO:0006405;RNA export from nucleus;0.00487896604915483!GO:0006520;amino acid metabolic process;0.00495674825463225!GO:0009116;nucleoside metabolic process;0.00524383141042632!GO:0005791;rough endoplasmic reticulum;0.00532725927582082!GO:0030658;transport vesicle membrane;0.00548390808830426!GO:0030384;phosphoinositide metabolic process;0.00558320772793754!GO:0005758;mitochondrial intermembrane space;0.00566061913173392!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00576657487020987!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00599751691747552!GO:0008180;signalosome;0.00613176287327463!GO:0016272;prefoldin complex;0.00615724443390053!GO:0005874;microtubule;0.00617760541765647!GO:0031970;organelle envelope lumen;0.0061781909058612!GO:0030118;clathrin coat;0.00621387224989874!GO:0031124;mRNA 3'-end processing;0.00647192996112952!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00649007878866761!GO:0008408;3'-5' exonuclease activity;0.00654434215742178!GO:0000178;exosome (RNase complex);0.00675850133605859!GO:0030145;manganese ion binding;0.00681831737380541!GO:0005773;vacuole;0.00685267183373646!GO:0006275;regulation of DNA replication;0.00725710123204638!GO:0042770;DNA damage response, signal transduction;0.00733283625162683!GO:0000228;nuclear chromosome;0.00740908709536434!GO:0051789;response to protein stimulus;0.00822094154542134!GO:0006986;response to unfolded protein;0.00822094154542134!GO:0044262;cellular carbohydrate metabolic process;0.00826485373553023!GO:0005832;chaperonin-containing T-complex;0.00853610653702654!GO:0015631;tubulin binding;0.00855226273779289!GO:0006376;mRNA splice site selection;0.0088246423730972!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0088246423730972!GO:0004518;nuclease activity;0.0088577142650019!GO:0048518;positive regulation of biological process;0.0088577142650019!GO:0031323;regulation of cellular metabolic process;0.00903649760761287!GO:0008139;nuclear localization sequence binding;0.00924828398775318!GO:0006284;base-excision repair;0.00947039075127398!GO:0006740;NADPH regeneration;0.00947720196007641!GO:0006098;pentose-phosphate shunt;0.00947720196007641!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00956553925093902!GO:0043492;ATPase activity, coupled to movement of substances;0.00974179604297291!GO:0000096;sulfur amino acid metabolic process;0.010139634594246!GO:0000209;protein polyubiquitination;0.0102604356213663!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0104353415610739!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0105251313048052!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0105408076086795!GO:0017166;vinculin binding;0.0106094410565758!GO:0050662;coenzyme binding;0.010640851087227!GO:0000792;heterochromatin;0.0106431631970606!GO:0005876;spindle microtubule;0.0106617442725535!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0107996174325282!GO:0015002;heme-copper terminal oxidase activity;0.0107996174325282!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0107996174325282!GO:0004129;cytochrome-c oxidase activity;0.0107996174325282!GO:0007050;cell cycle arrest;0.0109106751384733!GO:0006338;chromatin remodeling;0.0109540076016895!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0109572969005058!GO:0042393;histone binding;0.0110658824324714!GO:0006509;membrane protein ectodomain proteolysis;0.0113821355403539!GO:0033619;membrane protein proteolysis;0.0113821355403539!GO:0031529;ruffle organization and biogenesis;0.0114288834392224!GO:0043624;cellular protein complex disassembly;0.0115535607367728!GO:0000922;spindle pole;0.011850220097706!GO:0046983;protein dimerization activity;0.0119256363913002!GO:0000323;lytic vacuole;0.0121851282445115!GO:0005764;lysosome;0.0121851282445115!GO:0046822;regulation of nucleocytoplasmic transport;0.0123035404248615!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0129404802567521!GO:0030133;transport vesicle;0.0131294767848477!GO:0007017;microtubule-based process;0.0131441169090966!GO:0043488;regulation of mRNA stability;0.0135432018872946!GO:0043487;regulation of RNA stability;0.0135432018872946!GO:0007346;regulation of progression through mitotic cell cycle;0.013854526178631!GO:0044454;nuclear chromosome part;0.0138550122425749!GO:0030660;Golgi-associated vesicle membrane;0.0140112863925191!GO:0050681;androgen receptor binding;0.0141136788074157!GO:0030127;COPII vesicle coat;0.0144826066952522!GO:0012507;ER to Golgi transport vesicle membrane;0.0144826066952522!GO:0030134;ER to Golgi transport vesicle;0.0146083740911589!GO:0004003;ATP-dependent DNA helicase activity;0.014869793841216!GO:0031570;DNA integrity checkpoint;0.014869793841216!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0150186856970787!GO:0030518;steroid hormone receptor signaling pathway;0.0150291502863752!GO:0022890;inorganic cation transmembrane transporter activity;0.0152633854429854!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0152778922517551!GO:0006350;transcription;0.0153610982710817!GO:0030032;lamellipodium biogenesis;0.0153610982710817!GO:0004177;aminopeptidase activity;0.0155273298296619!GO:0048468;cell development;0.0156662661313822!GO:0043189;H4/H2A histone acetyltransferase complex;0.0157013757992142!GO:0006270;DNA replication initiation;0.015979796609964!GO:0035267;NuA4 histone acetyltransferase complex;0.0160530225520646!GO:0009451;RNA modification;0.0160694461770484!GO:0019752;carboxylic acid metabolic process;0.0161803444557204!GO:0051101;regulation of DNA binding;0.0166066662949325!GO:0006378;mRNA polyadenylation;0.0168263949589907!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0168263949589907!GO:0045039;protein import into mitochondrial inner membrane;0.0168263949589907!GO:0048487;beta-tubulin binding;0.0171227112364752!GO:0046112;nucleobase biosynthetic process;0.0171527597674169!GO:0005862;muscle thin filament tropomyosin;0.017258874011419!GO:0009124;nucleoside monophosphate biosynthetic process;0.0173317888987924!GO:0009123;nucleoside monophosphate metabolic process;0.0173317888987924!GO:0030119;AP-type membrane coat adaptor complex;0.0173918983126501!GO:0031902;late endosome membrane;0.0176954871419752!GO:0008629;induction of apoptosis by intracellular signals;0.0176977573551991!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0177642410620137!GO:0065009;regulation of a molecular function;0.0178969634283553!GO:0043601;nuclear replisome;0.0178969634283553!GO:0030894;replisome;0.0178969634283553!GO:0005669;transcription factor TFIID complex;0.0181065120358011!GO:0030027;lamellipodium;0.018537239006159!GO:0000175;3'-5'-exoribonuclease activity;0.0185479239300843!GO:0006082;organic acid metabolic process;0.0186944016747558!GO:0031901;early endosome membrane;0.0186944016747558!GO:0040008;regulation of growth;0.0189645311700965!GO:0005869;dynactin complex;0.0196837165940686!GO:0006458;'de novo' protein folding;0.0199056679511343!GO:0051084;'de novo' posttranslational protein folding;0.0199056679511343!GO:0006417;regulation of translation;0.0201621045882221!GO:0006818;hydrogen transport;0.0203468337883701!GO:0000786;nucleosome;0.0210992630154932!GO:0032984;macromolecular complex disassembly;0.021437431818992!GO:0016197;endosome transport;0.0214496356943274!GO:0008243;plasminogen activator activity;0.0215880750616639!GO:0032200;telomere organization and biogenesis;0.0218253053610138!GO:0000723;telomere maintenance;0.0218253053610138!GO:0030833;regulation of actin filament polymerization;0.0231154396711821!GO:0015992;proton transport;0.0231518590810097!GO:0045045;secretory pathway;0.02348676599072!GO:0031123;RNA 3'-end processing;0.02348676599072!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.02348676599072!GO:0016126;sterol biosynthetic process;0.0248187237876594!GO:0000725;recombinational repair;0.0251120658153957!GO:0000724;double-strand break repair via homologous recombination;0.0251120658153957!GO:0008538;proteasome activator activity;0.0252914826982681!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0253420037913545!GO:0032259;methylation;0.0255543152182874!GO:0008632;apoptotic program;0.0259017955905953!GO:0031371;ubiquitin conjugating enzyme complex;0.0261050776133586!GO:0030131;clathrin adaptor complex;0.0265730782370388!GO:0043065;positive regulation of apoptosis;0.0267997118739672!GO:0030125;clathrin vesicle coat;0.0272571095439073!GO:0030665;clathrin coated vesicle membrane;0.0272571095439073!GO:0006360;transcription from RNA polymerase I promoter;0.0272720932476968!GO:0030508;thiol-disulfide exchange intermediate activity;0.0273344824305141!GO:0022411;cellular component disassembly;0.0273969491573892!GO:0032906;transforming growth factor-beta2 production;0.0273969491573892!GO:0032909;regulation of transforming growth factor-beta2 production;0.0273969491573892!GO:0006695;cholesterol biosynthetic process;0.0279461926118821!GO:0007569;cell aging;0.0282816645881589!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0283559099642803!GO:0010257;NADH dehydrogenase complex assembly;0.0283559099642803!GO:0033108;mitochondrial respiratory chain complex assembly;0.0283559099642803!GO:0006007;glucose catabolic process;0.0284301440082079!GO:0016311;dephosphorylation;0.0287976213632727!GO:0045892;negative regulation of transcription, DNA-dependent;0.0289595433276099!GO:0006779;porphyrin biosynthetic process;0.0289595433276099!GO:0033014;tetrapyrrole biosynthetic process;0.0289595433276099!GO:0006778;porphyrin metabolic process;0.0293252156078357!GO:0033013;tetrapyrrole metabolic process;0.0293252156078357!GO:0047485;protein N-terminus binding;0.0293252156078357!GO:0043241;protein complex disassembly;0.0294579693887072!GO:0043414;biopolymer methylation;0.0295375148244703!GO:0031625;ubiquitin protein ligase binding;0.0297243540557196!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0297243540557196!GO:0009161;ribonucleoside monophosphate metabolic process;0.0299549971848626!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0299549971848626!GO:0065007;biological regulation;0.0299933392818837!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0304493803885082!GO:0043068;positive regulation of programmed cell death;0.0306461564723312!GO:0004748;ribonucleoside-diphosphate reductase activity;0.030892923527381!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.030892923527381!GO:0051053;negative regulation of DNA metabolic process;0.0309094392437607!GO:0007034;vacuolar transport;0.0310359493630869!GO:0050178;phenylpyruvate tautomerase activity;0.031242505589143!GO:0030911;TPR domain binding;0.0313715973162471!GO:0048144;fibroblast proliferation;0.0316359231881541!GO:0048145;regulation of fibroblast proliferation;0.0316359231881541!GO:0006950;response to stress;0.0316605851611378!GO:0030041;actin filament polymerization;0.0316999754376658!GO:0009303;rRNA transcription;0.0321404694365934!GO:0005096;GTPase activator activity;0.0322064074985232!GO:0005663;DNA replication factor C complex;0.0322141729659902!GO:0048146;positive regulation of fibroblast proliferation;0.032498876742724!GO:0048037;cofactor binding;0.032745238346716!GO:0006607;NLS-bearing substrate import into nucleus;0.0327761443543072!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0336898008567817!GO:0003756;protein disulfide isomerase activity;0.0338271354026424!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0338271354026424!GO:0006892;post-Golgi vesicle-mediated transport;0.0340217439302882!GO:0009967;positive regulation of signal transduction;0.0340317504602319!GO:0006739;NADP metabolic process;0.0342768305257621!GO:0007040;lysosome organization and biogenesis;0.0343797298451321!GO:0003702;RNA polymerase II transcription factor activity;0.0343853196639564!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0349610922038997!GO:0008097;5S rRNA binding;0.0355049763666722!GO:0006730;one-carbon compound metabolic process;0.0357670132581644!GO:0007021;tubulin folding;0.0358426783387788!GO:0007162;negative regulation of cell adhesion;0.0359307387543974!GO:0018193;peptidyl-amino acid modification;0.0361337163315972!GO:0000118;histone deacetylase complex;0.0361489843511109!GO:0030659;cytoplasmic vesicle membrane;0.036986244887958!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0374036176082632!GO:0019783;small conjugating protein-specific protease activity;0.0374270599514863!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0374996969182075!GO:0000152;nuclear ubiquitin ligase complex;0.0377621025258535!GO:0000123;histone acetyltransferase complex;0.0380427162884376!GO:0032040;small subunit processome;0.0386413411974999!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0392619577491386!GO:0003923;GPI-anchor transamidase activity;0.0396389174487981!GO:0016255;attachment of GPI anchor to protein;0.0396389174487981!GO:0042765;GPI-anchor transamidase complex;0.0396389174487981!GO:0005784;translocon complex;0.0396963574567734!GO:0030031;cell projection biogenesis;0.0406111874148042!GO:0006213;pyrimidine nucleoside metabolic process;0.0409211313872565!GO:0000077;DNA damage checkpoint;0.0410353792728308!GO:0006354;RNA elongation;0.0421019477735263!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0421742539285267!GO:0008047;enzyme activator activity;0.042269227575857!GO:0008637;apoptotic mitochondrial changes;0.0431043531372183!GO:0051085;chaperone cofactor-dependent protein folding;0.0433581342696669!GO:0007264;small GTPase mediated signal transduction;0.0441833902969649!GO:0016408;C-acyltransferase activity;0.0444733704147207!GO:0004239;methionyl aminopeptidase activity;0.0445776725504737!GO:0051287;NAD binding;0.0445776725504737!GO:0004843;ubiquitin-specific protease activity;0.0449112910826103!GO:0031326;regulation of cellular biosynthetic process;0.0450125221753384!GO:0046982;protein heterodimerization activity;0.0453638374928923!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0454478627069356!GO:0016301;kinase activity;0.046566029160704!GO:0045792;negative regulation of cell size;0.046985662777142!GO:0000910;cytokinesis;0.0474074151411671!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0474074151411671!GO:0006400;tRNA modification;0.0476768742663365!GO:0046426;negative regulation of JAK-STAT cascade;0.0477015735685763!GO:0030522;intracellular receptor-mediated signaling pathway;0.0479388742589143!GO:0005801;cis-Golgi network;0.0479795963140637!GO:0009067;aspartate family amino acid biosynthetic process;0.0481193713656499!GO:0004523;ribonuclease H activity;0.0481955044142983!GO:0008287;protein serine/threonine phosphatase complex;0.0482624250214423!GO:0003887;DNA-directed DNA polymerase activity;0.0491658081354724!GO:0051098;regulation of binding;0.0495049574720718!GO:0004680;casein kinase activity;0.0495093671655062!GO:0006596;polyamine biosynthetic process;0.0496345502657502!GO:0009893;positive regulation of metabolic process;0.0497278903454784!GO:0022415;viral reproductive process;0.0498590555411798
|sample_id=10758
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=pelvis
|top_motifs=NKX3-1:1.89309627834;TFDP1:1.41392330972;ONECUT1,2:1.38782918422;ELK1,4_GABP{A,B1}:1.38502203263;PPARG:1.36293837478;HOXA9_MEIS1:1.34249890343;PITX1..3:1.25758767804;ADNP_IRX_SIX_ZHX:1.25727297222;FOXD3:1.23236386507;FOX{I1,J2}:1.01677171561;TEF:0.99127957233;ZBTB16:0.918324222395;POU1F1:0.906153899015;ELF1,2,4:0.888960053344;E2F1..5:0.861784775579;ZNF143:0.743892472368;EN1,2:0.734099204139;GATA4:0.703579230626;GFI1:0.622047351086;FOXP1:0.600735918532;PAX4:0.556469946298;RBPJ:0.53728133798;POU3F1..4:0.514608799538;ARID5B:0.512053209305;RXR{A,B,G}:0.498686429319;NFE2:0.495518291724;BACH2:0.494701601562;PRDM1:0.46353299965;bHLH_family:0.424862925758;TOPORS:0.421199583386;MYB:0.418725622826;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.4176366208;PAX8:0.413434320784;ZNF384:0.385834317535;AIRE:0.376051015903;NFE2L1:0.359461670118;TP53:0.358267220419;NR3C1:0.357617448494;FOS_FOS{B,L1}_JUN{B,D}:0.28973831165;EVI1:0.28378939581;CEBPA,B_DDIT3:0.28351518588;GFI1B:0.280056408786;OCT4_SOX2{dimer}:0.27153634552;TEAD1:0.271165102251;PAX3,7:0.269055875847;HOX{A4,D4}:0.266936159686;UFEwm:0.256489849426;BREu{core}:0.247936073179;HOX{A5,B5}:0.244159544417;POU2F1..3:0.240953423456;HIC1:0.237026285448;NKX2-1,4:0.200084510974;CDC5L:0.187136055302;PRRX1,2:0.1852483001;NR6A1:0.183108038113;FOXA2:0.179172104538;TFAP2B:0.17471198954;IKZF2:0.161821260803;VSX1,2:0.130855369069;FOSL2:0.130788575564;YY1:0.125583903868;PBX1:0.109474706915;T:0.101552054206;POU6F1:0.0862363846602;NKX3-2:0.0795884611144;NRF1:0.0778057255659;ZFP161:0.0598003126447;HMGA1,2:0.0468975116738;GCM1,2:0.0349826640297;ZBTB6:0.025507533005;CDX1,2,4:0.0199525791906;TFAP2{A,C}:0.019564887173;ALX4:0.00827918868555;STAT5{A,B}:0.00782594433377;NFIX:0.00699615455887;FOXM1:0.00309886643282;AHR_ARNT_ARNT2:-0.0114955509381;HBP1_HMGB_SSRP1_UBTF:-0.0261704345056;CRX:-0.0367224694902;NFE2L2:-0.0378634186312;TLX1..3_NFIC{dimer}:-0.0414808224761;HES1:-0.067691073432;MYBL2:-0.0773887826131;NFY{A,B,C}:-0.0799900078151;DMAP1_NCOR{1,2}_SMARC:-0.0835461797387;GTF2A1,2:-0.084392590119;PDX1:-0.0882542813568;KLF4:-0.106929114071;NKX6-1,2:-0.116094947919;CUX2:-0.129470226796;RUNX1..3:-0.138334410017;ZIC1..3:-0.14676388637;MED-1{core}:-0.158737835255;MTE{core}:-0.164260801745;MYOD1:-0.173170662728;SPI1:-0.182639916331;PAX5:-0.183935091193;SRF:-0.195602642224;MZF1:-0.195688299048;GTF2I:-0.197936782685;LEF1_TCF7_TCF7L1,2:-0.209897960688;HNF1A:-0.213777735932;SMAD1..7,9:-0.214364023967;HLF:-0.217715538731;IKZF1:-0.222042063714;NANOG:-0.231732152931;ESRRA:-0.232382991653;ETS1,2:-0.234758191645;NKX2-2,8:-0.24013618662;FOXO1,3,4:-0.249824598067;TBX4,5:-0.25267061478;NR5A1,2:-0.27485881409;RFX1:-0.276482019766;SPIB:-0.279782551119;FOXQ1:-0.281528570042;POU5F1:-0.295299130969;EGR1..3:-0.301932986586;REST:-0.310279417488;BPTF:-0.339064399557;MEF2{A,B,C,D}:-0.342150069794;PAX6:-0.352409640182;MYFfamily:-0.354762004774;NFKB1_REL_RELA:-0.355820452189;LHX3,4:-0.359763165035;IRF1,2:-0.364078018361;NFIL3:-0.390503696949;GZF1:-0.399705861567;XCPE1{core}:-0.405396079785;JUN:-0.41596515999;MAZ:-0.424483279585;HNF4A_NR2F1,2:-0.425685946206;XBP1:-0.437406516876;NHLH1,2:-0.443686061734;SOX2:-0.44511288432;FOX{F1,F2,J1}:-0.4472114206;GATA6:-0.447758767969;SNAI1..3:-0.457212583653;MTF1:-0.460218665811;SOX5:-0.460415205888;STAT2,4,6:-0.466225265603;SOX17:-0.47720631992;TAL1_TCF{3,4,12}:-0.483887822252;IRF7:-0.501992959573;TFAP4:-0.507984505537;HIF1A:-0.510232217163;PAX1,9:-0.511238946655;ATF5_CREB3:-0.524647756271;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.525646451179;ALX1:-0.528533306647;NFATC1..3:-0.54082283278;DBP:-0.549435078362;AR:-0.557041877531;ZEB1:-0.599128937235;PAX2:-0.621341601017;SOX{8,9,10}:-0.632224699444;ATF2:-0.639289506646;CREB1:-0.642082286779;ATF4:-0.644381310394;NR1H4:-0.666935042167;ZNF148:-0.671864717292;FOX{D1,D2}:-0.675925619359;PATZ1:-0.680838404334;TLX2:-0.683440108108;RREB1:-0.694386746781;SPZ1:-0.711846262561;ZNF238:-0.715457358286;LMO2:-0.742447079881;MAFB:-0.764107947195;HSF1,2:-0.811146191188;STAT1,3:-0.81148757203;FOXL1:-0.812618809124;FOXN1:-0.826614061803;NANOG{mouse}:-0.832563912623;NKX2-3_NKX2-5:-0.83578480045;RXRA_VDR{dimer}:-0.839497071233;FOXP3:-0.880870832234;EBF1:-0.894243394455;HOX{A6,A7,B6,B7}:-0.904449206953;ZNF423:-0.907271121197;TGIF1:-0.910279016372;EP300:-0.92708006317;SP1:-0.964212839355;SREBF1,2:-0.970106641128;TBP:-0.99568003738;HAND1,2:-1.01417731417;ATF6:-1.07004612305;HMX1:-1.16467694969;TFCP2:-1.2253511723;RFX2..5_RFXANK_RFXAP:-1.24320286911;RORA:-1.28602599888;GLI1..3:-1.37509557356;ESR1:-2.17856354522
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10758-110E2;search_select_hide=table117:FF:10758-110E2
}}
}}

Latest revision as of 15:03, 3 June 2020

Name:fibrosarcoma cell line:HT-1080
Species:Human (Homo sapiens)
Library ID:CNhs11860
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepelvis
dev stageNA
sexmale
age35
cell typeunclassifiable
cell lineHT-1080
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005908
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11860 CAGE DRX007886 DRR008758
Accession ID Hg19

Library idBAMCTSS
CNhs11860 DRZ000183 DRZ001568
Accession ID Hg38

Library idBAMCTSS
CNhs11860 DRZ011533 DRZ012918
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.335
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.411
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.105
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-2.143223e-4
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.143
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0403
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.163
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.149
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0186
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.261
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0134
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.419
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.085
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.321
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.149
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11860

Jaspar motifP-value
MA0002.20.96
MA0003.10.246
MA0004.10.18
MA0006.10.815
MA0007.10.762
MA0009.10.375
MA0014.10.424
MA0017.10.302
MA0018.20.0297
MA0019.10.0325
MA0024.10.00382
MA0025.10.3
MA0027.10.635
MA0028.14.51543e-12
MA0029.10.893
MA0030.10.356
MA0031.10.295
MA0035.20.661
MA0038.10.182
MA0039.20.0211
MA0040.10.478
MA0041.10.123
MA0042.10.521
MA0043.10.00212
MA0046.10.00872
MA0047.20.508
MA0048.11.64951e-4
MA0050.10.3
MA0051.10.855
MA0052.10.0155
MA0055.10.019
MA0057.10.899
MA0058.10.623
MA0059.10.0216
MA0060.10.61
MA0061.10.0824
MA0062.22.53062e-13
MA0065.20.138
MA0066.10.312
MA0067.10.0132
MA0068.10.758
MA0069.10.419
MA0070.10.629
MA0071.10.671
MA0072.10.535
MA0073.10.868
MA0074.10.558
MA0076.16.77442e-14
MA0077.10.472
MA0078.10.915
MA0079.20.196
MA0080.20.0702
MA0081.10.501
MA0083.10.753
MA0084.10.34
MA0087.10.144
MA0088.17.28038e-4
MA0090.10.0521
MA0091.10.0847
MA0092.10.395
MA0093.10.156
MA0099.21.36613e-11
MA0100.10.381
MA0101.10.815
MA0102.20.02
MA0103.10.344
MA0104.20.0237
MA0105.10.435
MA0106.10.0277
MA0107.10.161
MA0108.21.92539e-9
MA0111.10.718
MA0112.20.00845
MA0113.10.128
MA0114.10.127
MA0115.10.792
MA0116.10.347
MA0117.10.391
MA0119.10.413
MA0122.10.347
MA0124.10.423
MA0125.10.272
MA0131.10.101
MA0135.16.85925e-4
MA0136.10.509
MA0137.20.212
MA0138.20.341
MA0139.10.233
MA0140.10.677
MA0141.10.933
MA0142.10.191
MA0143.10.594
MA0144.10.39
MA0145.10.141
MA0146.10.106
MA0147.10.00159
MA0148.10.962
MA0149.10.0473
MA0150.10.112
MA0152.10.669
MA0153.10.0109
MA0154.10.017
MA0155.10.0157
MA0156.12.96078e-5
MA0157.10.977
MA0159.10.314
MA0160.10.306
MA0162.10.733
MA0163.10.344
MA0164.10.0994
MA0258.10.0692
MA0259.10.178



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11860

Novel motifP-value
10.118
100.358
1000.783
1010.463
1020.294
1030.498
1040.675
1050.254
1060.41
1070.11
1080.155
1090.334
110.293
1100.344
1110.0135
1120.544
1130.235
1140.649
1150.923
1160.604
1170.934
1180.578
1190.436
120.57
1200.182
1210.773
1220.81
1230.0128
1240.735
1250.184
1261
1270.104
1280.612
1290.69
130.901
1300.384
1310.149
1320.748
1330.359
1340.717
1350.111
1360.0611
1370.242
1380.274
1390.849
140.331
1400.821
1410.833
1420.694
1430.128
1440.915
1450.544
1460.588
1470.589
1480.413
1490.474
150.266
1500.35
1510.84
1520.966
1530.902
1540.403
1550.0967
1560.663
1570.795
1580.154
1590.0779
160.827
1600.824
1610.654
1620.621
1630.528
1640.0125
1650.98
1660.754
1670.0552
1680.798
1690.286
170.899
180.13
190.418
20.819
200.277
210.151
220.246
230.0907
240.688
250.435
260.5
270.288
280.302
290.113
30.307
300.125
310.975
320.0706
330.878
340.187
350.446
360.592
370.917
380.975
390.518
40.926
400.256
410.512
420.33
430.411
440.675
450.318
460.287
470.496
480.208
490.519
50.5
500.957
510.612
520.0216
530.575
540.808
550.706
560.941
570.0591
580.442
590.329
60.507
600.257
610.301
620.741
630.771
640.549
650.907
660.00107
670.357
680.15
690.474
70.526
700.551
710.626
720.364
730.556
740.634
750.748
760.903
770.987
780.633
790.464
80.115
800.0335
810.628
820.148
830.425
840.835
850.0183
860.711
870.2
880.139
890.386
90.144
900.362
910.174
920.635
930.525
940.514
950.233
960.898
970.523
980.897
990.072



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11860


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0101282 (HT-1080 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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