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{{f5samples
{{f5samples
|id=FF:10615-108G3
|DRA_sample_Accession=CAGE@SAMD00005730
|name=gastrointestinal carcinoma cell line:ECC12
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005730
|sample_id=10615
|accession_numbers=CAGE;DRX007893;DRR008765;DRZ000190;DRZ001575;DRZ011540;DRZ012925
|rna_tube_id=108G3
|accession_numbers_RNASeq=RNA-Seq;DRX057134;DRR062893;DRZ007969
|rna_box=108
|rna_position=G3
|sample_cell_lot=
|sample_cell_catalog=RCB1009
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=stomach
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=63
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=2.16
|rna_od260/280=2.08
|sample_cell_type=unclassifiable
|sample_cell_line=ECC12
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=gastrointestinal carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=170.24025
|rna_concentration=2.26987
|sample_note=
|profile_hcage=CNhs11738,LSID819,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:3119,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:3119
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101533
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.98!955.61!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.30!196.48!INSM1;;chr20:42984330..42984364,+!p2@HNF4A!2.22!165.25!HNF4A;;chr1:214161272..214161322,+!p1@PROX1!2.13!183.95!PROX1;;chr1:27240455..27240474,-!p1@NR0B2!2.10!123.55!NR0B2;;chr18:55102628..55102646,+!p2@ONECUT2!2.07!116.17!ONECUT2;;chr3:157824202..157824211,-!p3@SHOX2!2.07!116.00!SHOX2;;chr8:11561684..11561751,+!p1@GATA4!2.01!100.55!GATA4;;chr20:22565370..22565388,-!p2@FOXA2!2.00!98.84!FOXA2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.00!98.15!POU3F3;;chr18:55102598..55102623,+!p1@ONECUT2!1.94!87.00!ONECUT2;;chr6:117198400..117198441,+!p1@RFX6!1.93!84.60!RFX6;;chr2:182545234..182545252,-!p1@NEUROD1!1.92!82.19!NEUROD1;;chr13:72441315..72441454,-!p1@DACH1!1.91!154.44!DACH1;;chr7:73038839..73038862,-!p1@MLXIPL!1.91!80.31!MLXIPL;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.88!74.64!MEF2B;;chrY:21906594..21906622,-!p1@KDM5D!1.84!67.61!KDM5D;;chr20:22564895..22564910,-!p1@FOXA2!1.83!66.92!FOXA2;;chr15:57511609..57511651,+!p2@TCF12!1.82!107.25!TCF12;;chr7:27205136..27205164,-!p1@HOXA9!1.81!64.18!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!1.81!64.00!ELF3;;chr12:55413751..55413765,+!p1@NEUROD4!1.81!62.98!NEUROD4;;chr17:74137321..74137337,-!p1@FOXJ1!1.78!59.72!FOXJ1;;chrX:25034067..25034088,-!p1@ARX!1.71!50.28!ARX;;chr10:23481233..23481249,+!p1@PTF1A!1.70!48.56!PTF1A;;chr11:61520075..61520136,+!p1@C11orf9!1.69!97.98!C11orf9;;chr15:53082521..53082549,-!p1@ONECUT1!1.68!46.67!ONECUT1;;chr8:76319876..76319926,+!p1@HNF4G!1.66!44.61!HNF4G;;chr19:46367576..46367592,+!p1@FOXA3!1.64!42.56!FOXA3;;chr7:96654133..96654150,-!p1@DLX5!1.63!41.87!DLX5;;chr1:164528687..164528711,+!p6@PBX1!1.62!47.02!PBX1;;chr1:201979703..201979721,+!p2@ELF3!1.61!39.30!ELF3;;chr19:50432453..50432468,+!p1@ATF5!1.60!2068.06!ATF5;;chr20:50159198..50159299,-!p1@NFATC2!1.60!55.77!NFATC2;;chr3:157824156..157824164,-!p4@SHOX2!1.57!35.86!SHOX2;;chr8:53166899..53166914,-!p3@ST18!1.55!34.83!ST18;;chr3:181429704..181429722,+!p1@SOX2!1.54!33.80!SOX2;;chr13:28494130..28494168,+!p1@PDX1!1.54!33.29!PDX1;;chr7:27135591..27135658,-!p1@HOXA1!1.52!60.92!HOXA1;;chr3:157824437..157824459,-!p5@SHOX2!1.46!27.80!SHOX2;;chr1:214161328..214161348,+!p2@PROX1!1.46!27.80!PROX1;;chr17:46690839..46690884,-!p1@HOXB8!1.44!26.77!HOXB8;;chr7:156803329..156803362,-!p1@MNX1!1.44!26.60!MNX1;;chr3:24536231..24536249,-!p4@THRB!1.44!26.43!THRB;;chr5:72744594..72744609,-!p1@FOXD1!1.43!116.17!FOXD1;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.91!SOX2;;chr7:113726357..113726443,+!p1@FOXP2!1.42!43.07!FOXP2;;chr1:160336851..160336868,+!p1@NHLH1!1.42!25.57!NHLH1;;chr13:72441074..72441172,-!p2@DACH1!1.41!24.71!DACH1;;chr14:33403881..33403924,+!p1@NPAS3!1.41!24.54!NPAS3;;chr7:27142290..27142310,-!p1@HOXA2!1.40!23.85!HOXA2;;chr2:172967621..172967637,-!p1@DLX2!1.38!60.57!DLX2;;chr1:214161358..214161377,+!p3@PROX1!1.38!23.17!PROX1;;chr4:147560042..147560046,+!p1@POU4F2!1.36!22.14!POU4F2;;chr8:53162037..53162058,-!p5@ST18!1.36!22.14!ST18;;chr5:158526917..158526932,-!p1@EBF1!1.34!50.62!EBF1;;chr7:27205106..27205134,-!p2@HOXA9!1.33!20.42!HOXA9;;chr2:185463247..185463263,+!p1@ZNF804A!1.32!34.66!ZNF804A;;chr19:50435736..50435781,+!p3@ATF5!1.31!26.94!ATF5;;chr12:24715376..24715432,-!p1@SOX5!1.31!24.19!SOX5;;chr20:50418972..50419029,-!p1@SALL4!1.31!19.56!SALL4;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.67!HOXB3;;chr17:46675619..46675642,-!p5@HOXB6!1.27!17.50!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!1.26!17.33!HOXB8;;chr2:176969228..176969260,+!p1@HOXD11!1.22!15.62!HOXD11;;chr20:22566120..22566136,-!p4@FOXA2!1.22!15.44!FOXA2;;chr19:33793430..33793447,-!p1@CEBPA!1.18!59.72!CEBPA;;chr16:52581025..52581072,-!p1@TOX3!1.17!13.90!TOX3;;chr7:27196217..27196246,-!p2@HOXA7!1.17!13.90!HOXA7;;chr1:8763440..8763460,-!p2@RERE!1.16!67.78!RERE;;chr18:55102806..55102847,+!p3@ONECUT2!1.16!13.56!ONECUT2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.15!13.21!POU3F3;;chrX:84498989..84499003,+!p1@ZNF711!1.14!17.67!ZNF711;;chr3:18486354..18486377,-!p2@SATB1!1.14!15.96!SATB1;;chr17:46622205..46622218,-!p3@HOXB2!1.14!14.76!HOXB2;;chr17:46692624..46692659,-!p3@HOXB8!1.13!12.35!HOXB8;;chr2:239148671..239148686,-!p1@HES6!1.12!44.96!HES6;;chr11:113930425..113930471,+!p1@ZBTB16!1.12!17.67!ZBTB16;;chr3:114819101..114819121,-!p7@ZBTB20!1.12!12.18!ZBTB20;;chr9:3525727..3525828,-!p2@RFX3!1.10!30.03!RFX3;;chr2:200323414..200323455,-!p1@SATB2!1.10!25.05!SATB2;;chr17:46622440..46622477,-!p5@HOXB2!1.09!12.70!HOXB2;;chr7:27213893..27213954,-!p1@HOXA10!1.09!11.33!HOXA10;;chr20:21494684..21494708,-!p1@NKX2-2!1.09!11.33!NKX2-2;;chr20:22565185..22565223,-!p3@FOXA2!1.08!11.15!FOXA2;;chr1:244214577..244214593,+!p1@ZNF238!1.08!10.98!ZNF238;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.08!10.98!POU3F3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.08!10.98!TFCP2L1;;chr3:52001448..52001478,-!p2@PCBP4!1.07!150.49!PCBP4;;chr1:204042233..204042249,+!p1@SOX13!1.07!68.12!SOX13;;chr3:24536253..24536328,-!p1@THRB!1.07!20.59!THRB;;chr9:129376233..129376251,+!p2@LMX1B!1.07!10.81!LMX1B;;chr9:129376201..129376225,+!p1@LMX1B!1.07!10.81!LMX1B;;chr21:47063625..47063658,+!p1@PCBP3!1.06!45.82!PCBP3;;chr3:157824322..157824334,-!p7@SHOX2!1.06!10.47!SHOX2;;chr9:3525867..3525902,-!p3@RFX3!1.05!36.03!RFX3;;chr20:43935474..43935490,+!p1@RBPJL!1.05!10.30!RBPJL;;chrY:2803415..2803468,+!p1@ZFY!1.04!9.95!ZFY;;chr3:24206603..24206613,-!p17@THRB!1.03!9.61!THRB;;chr17:46671108..46671147,-!p1@HOXB5!1.02!9.44!HOXB5;;chr1:214161428..214161437,+!p6@PROX1!1.02!9.44!PROX1;;chrX:84499081..84499115,+!p2@ZNF711!1.01!13.73!ZNF711;;chr19:12163769..12163798,-!p1@ZNF878!1.01!12.01!ZNF878;;chr2:172949484..172949522,+!p1@DLX1!1.01!9.27!DLX1;;chr14:36003363..36003378,+!p1@INSM2!1.01!9.27!INSM2;;chr14:33408072..33408114,+!p2@NPAS3!1.00!10.64!NPAS3;;chr3:157824001..157824078,-!p2@SHOX2!1.00!9.09!SHOX2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.00!8.92!SEBOX;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.92!HOXB6;;chr1:165325006..165325012,-!p2@LMX1A!1.00!8.92!LMX1A;;chr12:103352277..103352324,+!p2@ASCL1!1.00!8.92!ASCL1;;chr2:71127699..71127744,+!p1@VAX2!0.99!18.53!VAX2;;chr7:96634878..96634900,+!p2@DLX6!0.99!8.75!DLX6;;chr11:63684602..63684664,-!p1@RCOR2!0.98!17.33!RCOR2;;chr3:40547564..40547616,+!p1@ZNF620!0.98!12.18!ZNF620;;chr7:27135568..27135590,-!p2@HOXA1!0.98!8.58!HOXA1;;chr1:165325939..165325958,-!p1@LMX1A!0.98!8.58!LMX1A;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.24!SIM2;;chr2:176973498..176973524,+!p1@HOXD10!0.97!8.24!HOXD10;;chr5:158527104..158527135,-!p4@EBF1!0.97!8.24!EBF1;;chr1:209979467..209979494,-!p1@IRF6!0.96!9.09!IRF6;;chr7:27153454..27153469,-!p2@HOXA3!0.96!8.06!HOXA3;;chr17:46675558..46675577,-!p2@HOXB6!0.96!8.06!HOXB6;;chr4:149363475..149363492,-!p2@NR3C2!0.96!8.06!NR3C2;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.89!FOXA1;;chr13:72441506..72441562,-!p3@DACH1!0.94!7.72!DACH1;;chr7:27169801..27169844,-!p2@HOXA4!0.94!7.72!HOXA4;;chrX:85403445..85403479,+!p2@DACH2!0.94!7.72!DACH2;;chr17:46703687..46703740,-!p1@HOXB9!0.94!7.72!HOXB9;;chr18:72922811..72922827,+!p1@TSHZ1!0.93!38.44!TSHZ1;;chr3:71630980..71631110,-!p3@FOXP1!0.93!27.28!FOXP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.39!TWIST1;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.55!HOXA3;;chr7:96635178..96635181,+!p1@DLX6!0.93!7.55!DLX6;;chr4:149363494..149363543,-!p1@NR3C2!0.93!7.55!NR3C2;;chr1:10754477..10754517,-!p1@CASZ1!0.92!12.35!CASZ1;;chr5:134369905..134369972,-!p1@PITX1!0.92!11.50!PITX1;;chr1:214161619..214161629,+!p5@PROX1!0.92!7.38!PROX1;;chr3:24206665..24206674,-!p21@THRB!0.92!7.38!THRB;;chr1:212782094..212782109,+!p1@ATF3!0.91!205.06!ATF3;;chr2:66662249..66662267,+!p2@MEIS1!0.91!28.66!MEIS1;;chr2:200322654..200322707,-!p2@SATB2!0.91!10.64!SATB2;;chr9:22447422..22447483,+!p1@DMRTA1!0.91!7.04!DMRTA1;;chr9:37034469..37034474,-!p1@PAX5!0.91!7.04!PAX5;;chr1:10856694..10856715,-!p3@CASZ1!0.90!6.86!CASZ1;;chr3:157824341..157824356,-!p8@SHOX2!0.90!6.86!SHOX2;;chr17:46692603..46692621,-!p6@HOXB8!0.90!6.86!HOXB8;;chr19:6110474..6110551,-!p1@RFX2!0.89!43.41!RFX2;;chr2:60780753..60780800,-!p1@BCL11A!0.89!34.83!BCL11A;;chr20:42143077..42143126,+!p1@L3MBTL1!0.89!14.41!L3MBTL;;chr8:60031809..60031835,-!p4@TOX!0.89!8.75!TOX;;chr5:158527139..158527161,-!p5@EBF1!0.89!6.69!EBF1;;chr2:177053386..177053402,+!p1@HOXD1!0.89!6.69!HOXD1;;chr3:114819073..114819100,-!p10@ZBTB20!0.88!6.52!ZBTB20;;chr12:24102576..24102623,-!p2@SOX5!0.88!6.52!SOX5;;chr20:42143136..42143161,+!p3@L3MBTL1!0.87!10.47!L3MBTL;;chr20:50418128..50418147,-!p2@SALL4!0.87!6.35!SALL4;;chr19:45971246..45971265,+!p1@FOSB!0.86!122.52!FOSB;;chr5:176738887..176738934,-!p1@MXD3!0.86!44.61!MXD3;;chr17:46667628..46667642,-!p2@HOXB3!0.86!6.18!HOXB3;;chr18:45935720..45935772,-!p1@ZBTB7C!0.86!6.18!ZBTB7C;;chr19:33865009..33865090,+!p3@CEBPG!0.85!8.24!CEBPG;;chr2:176033066..176033087,-!p2@ATF2!0.85!8.06!ATF2;;chr2:25565329..25565342,-!p6@DNMT3A!0.85!7.04!DNMT3A;;chr16:67198633..67198671,+!p1@HSF4!0.85!6.01!HSF4;;chr12:103351694..103351704,+!p6@ASCL1!0.85!6.01!ASCL1;;chr7:27219833..27219845,-!p7@HOXA10!0.85!6.01!HOXA10;;chr5:150284532..150284549,-!p1@ZNF300!0.84!12.70!ZNF300;;chr6:168227552..168227609,+!p1@MLLT4!0.83!50.28!MLLT4;;chr16:52580953..52580992,-!p2@TOX3!0.83!5.83!TOX3;;chr4:149366111..149366128,-!p7@NR3C2!0.83!5.83!NR3C2;;chr12:85673977..85674015,+!p1@ALX1!0.83!5.83!ALX1;;chr1:226595726..226595737,-!p2@PARP1!0.82!14.41!PARP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.82!9.44!ZBTB16;;chr7:27183263..27183284,-!p2@HOXA5!0.82!5.66!HOXA5;;chr7:27190547..27190591,-!p1@HOXA6!0.82!5.66!HOXA6;;chr6:126070769..126070801,+!p1@HEY2!0.81!6.35!HEY2;;chr7:27183291..27183324,-!p1@HOXA5!0.81!5.49!HOXA5;;chr12:109747023..109747033,-!p3@FOXN4!0.81!5.49!FOXN4;;chr12:121416340..121416360,+!p1@HNF1A!0.81!5.49!HNF1A;;chr12:24715342..24715354,-!p4@SOX5!0.81!5.49!SOX5;;chr9:14314131..14314147,-!p2@NFIB!0.80!32.09!NFIB;;chr8:60031762..60031803,-!p3@TOX!0.80!8.06!TOX;;chrY:21906761..21906810,-!p2@KDM5D!0.80!5.32!KDM5D;;c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RB!0.34!1.20!THRB;;chr3:52002412..52002433,-!p7@PCBP4!0.34!1.20!PCBP4;;chr19:38183166..38183184,-!p3@ZNF781!0.34!1.20!ZNF781;;chr19:4153613..4153652,+!p1@CREB3L3!0.34!1.20!CREB3L3;;chr19:56146421..56146438,+!p13@ZNF580,p4@ZNF581!0.34!1.20!ZNF580;;chr19:9811125..9811144,-!p2@ZNF812!0.34!1.20!ZNF812;;chr1:156460436..156460462,-!p7@MEF2D!0.34!1.20!MEF2D;;chr1:244219392..244219409,+!p5@ZNF238!0.34!1.20!ZNF238;;chr1:8763394..8763399,-!p34@RERE!0.34!1.20!RERE;;chr10:126138622..126138638,-!p2@NKX1-2!0.34!1.20!NKX1-2;;chr12:52430835..52430843,+!p17@NR4A1!0.34!1.20!NR4A1;;chr13:28494375..28494416,+!p4@PDX1!0.34!1.20!PDX1;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!0.34!1.20!SOHLH2;;chr13:72441289..72441300,-!p13@DACH1!0.34!1.20!DACH1;;chr14:33408057..33408068,+!p9@NPAS3!0.34!1.20!NPAS3;;chr16:51185363..51185381,-!p4@SALL1!0.34!1.20!SALL1;;chr16:79633664..79633681,-!p9@MAF!0.34!1.20!MAF;;chr17:46688310..46688323,-!p4@HOXB7!0.34!1.20!HOXB7;;chr17:46692287..46692317,-!p7@HOXB8!0.34!1.20!HOXB8;;chr18:42260236..42260250,+!p7@SETBP1!0.34!1.20!SETBP1;;chrX:84499056..84499078,+!p3@ZNF711!0.34!1.20!ZNF711;;chrX:47225841..47225861,+!p@chrX:47225841..47225861,+!0.34!1.20!ZNF157;;chr22:39916558..39916579,+!p1@ATF4!0.33!570.21!ATF4;;chr6:34204642..34204664,+!p2@HMGA1!0.33!264.08!HMGA1;;chr12:57916584..57916682,+!p1@MBD6!0.33!38.61!MBD6;;chr20:30795511..30795562,-!p1@PLAGL2!0.33!34.32!PLAGL2;;chr12:50479109..50479146,+!p2@SMARCD1!0.33!32.77!SMARCD1;;chr9:110252035..110252057,-!p1@KLF4!0.33!30.72!KLF4;;chr1:6640046..6640101,+!p1@ZBTB48!0.33!14.76!ZBTB48;;chr19:58790314..58790358,+!p1@ZNF8!0.33!14.41!ZNF8;;chr19:57999101..57999158,+!p1@ZNF419!0.33!12.53!ZNF419;;chr8:28243661..28243709,-!p1@ZNF395!0.33!10.64!ZNF395;;chrX:129402866..129402880,-!p1@ZNF280C!0.33!10.64!ZNF280C;;chr19:38146320..38146401,-!p1@ZFP30!0.33!10.12!ZFP30;;chr19:57752022..57752108,+!p1@ZNF805!0.33!7.72!ZNF805;;chr9:37465399..37465454,-!p1@ZBTB5!0.33!7.72!ZBTB5;;chr8:128750654..128750793,+!p3@MYC!0.33!7.21!MYC;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.33!4.63!ZFP112;;chr11:130184470..130184533,-!p2@ZBTB44!0.33!4.63!ZBTB44;;chr19:37958318..37958365,-!p2@ZNF569!0.33!4.46!ZNF569;;chr19:37329254..37329295,-!p1@ZNF790!0.33!4.12!ZNF790;;chr15:56535946..56535987,-!p1@RFX7!0.33!3.78!RFX7;;chr6:41514005..41514026,+!p3@FOXP4!0.33!3.43!FOXP4;;chr19:47616992..47617011,-!p4@ZC3H4!0.33!3.43!ZC3H4;;chr1:151043266..151043295,+!p2@GABPB2!0.33!3.43!GABPB2;;chr10:21823381..21823399,+!p4@MLLT10!0.33!2.40!MLLT10;;chr4:87967906..87967931,+!p15@AFF1!0.33!1.89!AFF1;;chr1:120190761..120190782,-!p2@ZNF697!0.33!1.89!ZNF697;;chr19:38183208..38183225,-!p1@ZNF781!0.33!1.72!ZNF781;;chr19:52531585..52531596,-!p2@ZNF614!0.33!1.72!ZNF614;;chr11:130184623..130184634,-!p6@ZBTB44!0.33!1.54!ZBTB44;;chr19:37861994..37862013,+!p2@ZNF527!0.33!1.54!ZNF527;;chr12:53847004..53847008,+!p13@PCBP2!0.33!1.37!PCBP2;;chr4:146860163..146860188,-!p5@ZNF827!0.33!1.37!ZNF827;;chr20:49547910..49547988,-!p1@ADNP!0.32!70.87!ADNP;;chr3:183415558..183415649,+!p1@YEATS2!0.32!49.59!YEATS2;;chr12:69753448..69753577,+!p1@YEATS4!0.32!37.24!YEATS4;;chr7:86781734..86781777,+!p1@DMTF1!0.32!34.15!DMTF1;;chr19:9695169..9695188,-!p1@ZNF121!0.32!32.60!ZNF121;;chr8:124286495..124286548,-!p1@ZHX1!0.32!18.02!ZHX1;;chr6:41514305..41514359,+!p2@FOXP4!0.32!15.27!FOXP4;;chr19:56879653..56879743,+!p1@ZNF542!0.32!13.38!ZNF542;;chr13:41240717..41240735,-!p2@FOXO1!0.32!12.35!FOXO1;;chr19:35759976..35760042,+!p4@USF2!0.32!9.27!USF2;;chr1:151431647..151431669,-!p2@POGZ!0.32!8.58!POGZ;;chr19:58238958..58239000,-!p1@ZNF671!0.32!7.04!ZNF671;;chr5:137804484..137804498,+!p2@EGR1!0.32!6.86!EGR1;;chr10:38146510..38146576,-!p1@ZNF248!0.32!4.80!ZNF248;;chr15:37393449..37393528,-!p4@MEIS2!0.32!4.46!MEIS2;;chr6:157099036..157099067,+!p5@ARID1B!0.32!4.12!ARID1B;;chr19:36545291..36545314,-!p2@THAP8!0.32!3.95!THAP8;;chrX:101975643..101975683,+!p1@BHLHB9!0.32!3.43!BHLHB9;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.32!3.26!ZNF395;;chr7:27788205..27788255,+!p2@TAX1BP1!0.32!2.23!TAX1BP1;;
|fonse_cell_line=FF:0101120,FF:0101533
|fonse_cell_line=FF:0101120,FF:0101533
|fonse_cell_line_closure=FF:0101120,FF:0101533
|fonse_cell_line_closure=FF:0101120,FF:0101533
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10615
|name=gastrointestinal carcinoma cell line:ECC12
|namespace=FANTOM5
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|rna_box=108
|rna_catalog_number=
|rna_concentration=2.26987
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.16
|rna_od260/280=2.08
|rna_position=G3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108G3
|rna_weight_ug=170.24025
|rnaseq_library_id=RDhi10077
|sample_age=63
|sample_category=cell lines
|sample_cell_catalog=RCB1009
|sample_cell_line=ECC12
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=gastrointestinal carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.96027633648888e-268!GO:0043227;membrane-bound organelle;5.73505969043767e-240!GO:0043231;intracellular membrane-bound organelle;5.73505969043767e-240!GO:0043226;organelle;6.44516401807932e-234!GO:0043229;intracellular organelle;3.6236547920578e-233!GO:0005737;cytoplasm;1.51226918006006e-156!GO:0044422;organelle part;3.83818274612404e-142!GO:0044446;intracellular organelle part;2.31849653191946e-140!GO:0044444;cytoplasmic part;6.00260638408557e-118!GO:0005634;nucleus;4.41964999058057e-112!GO:0044237;cellular metabolic process;1.63066466949433e-111!GO:0044238;primary metabolic process;8.61372980561455e-111!GO:0043170;macromolecule metabolic process;6.21401305354139e-101!GO:0032991;macromolecular complex;1.3387821137189e-82!GO:0030529;ribonucleoprotein complex;4.0390422761019e-76!GO:0044428;nuclear part;7.45340837119297e-76!GO:0003723;RNA binding;9.50478095028755e-76!GO:0043233;organelle lumen;8.20003629105015e-73!GO:0031974;membrane-enclosed lumen;8.20003629105015e-73!GO:0043283;biopolymer metabolic process;3.33865128137809e-70!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.11197116185839e-67!GO:0010467;gene expression;7.62609303927289e-67!GO:0005739;mitochondrion;5.04216319773176e-61!GO:0005515;protein binding;5.89558639759669e-51!GO:0006396;RNA processing;1.37194527832122e-50!GO:0031090;organelle membrane;3.35458311399699e-50!GO:0003676;nucleic acid binding;6.22790298193179e-49!GO:0031981;nuclear lumen;7.40377268741113e-44!GO:0005840;ribosome;6.23849816081587e-43!GO:0016071;mRNA metabolic process;8.74178528828194e-43!GO:0033036;macromolecule localization;1.04116383948853e-41!GO:0015031;protein transport;1.61392453253753e-41!GO:0016070;RNA metabolic process;1.72712002991491e-41!GO:0016043;cellular component organization and biogenesis;3.71777222881809e-41!GO:0044429;mitochondrial part;5.02898752774903e-41!GO:0043234;protein complex;2.19812030366144e-40!GO:0019538;protein metabolic process;8.12196080416294e-40!GO:0031967;organelle envelope;2.52787088253037e-39!GO:0006412;translation;3.02489099357664e-39!GO:0031975;envelope;6.28100292743018e-39!GO:0003735;structural constituent of ribosome;4.02207572049862e-38!GO:0008380;RNA splicing;5.41680964186511e-38!GO:0009058;biosynthetic process;1.47852998520767e-37!GO:0008104;protein localization;2.20292707932898e-37!GO:0045184;establishment of protein localization;8.01851117629296e-37!GO:0006397;mRNA processing;1.2635716441996e-36!GO:0044267;cellular protein metabolic process;1.47068733376548e-36!GO:0044260;cellular macromolecule metabolic process;2.44980757548728e-36!GO:0044249;cellular biosynthetic process;9.91869051040221e-35!GO:0033279;ribosomal subunit;2.4315784467112e-34!GO:0046907;intracellular transport;9.09348138330906e-34!GO:0006259;DNA metabolic process;4.30505855837603e-32!GO:0006996;organelle organization and biogenesis;1.05355772051806e-31!GO:0009059;macromolecule biosynthetic process;1.43212379465776e-30!GO:0006886;intracellular protein transport;1.86437492284436e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.16131729202606e-28!GO:0005654;nucleoplasm;9.61700179779155e-28!GO:0005829;cytosol;2.62603785368918e-27!GO:0065003;macromolecular complex assembly;1.50355507700951e-26!GO:0019866;organelle inner membrane;7.59962572042033e-26!GO:0000166;nucleotide binding;1.39065919987022e-25!GO:0051649;establishment of cellular localization;1.4173164206777e-25!GO:0005740;mitochondrial envelope;4.35727745229119e-25!GO:0051641;cellular localization;5.93689893404816e-25!GO:0043228;non-membrane-bound organelle;1.04888339238425e-24!GO:0043232;intracellular non-membrane-bound organelle;1.04888339238425e-24!GO:0007049;cell cycle;1.4128006568631e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49047260355094e-24!GO:0012505;endomembrane system;3.06580957830548e-24!GO:0005681;spliceosome;5.06631809411897e-24!GO:0031966;mitochondrial membrane;9.4669540976489e-24!GO:0044451;nucleoplasm part;2.62566173265181e-23!GO:0005743;mitochondrial inner membrane;4.93870428126201e-23!GO:0022607;cellular component assembly;1.07581596167071e-22!GO:0006974;response to DNA damage stimulus;4.06337178374514e-21!GO:0006512;ubiquitin cycle;7.17794861879152e-21!GO:0006119;oxidative phosphorylation;1.80963707795813e-20!GO:0006457;protein folding;3.39938763179261e-20!GO:0016874;ligase activity;4.404014488625e-20!GO:0016462;pyrophosphatase activity;6.76139916502228e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.26821641049256e-20!GO:0031980;mitochondrial lumen;9.17376964263904e-20!GO:0005759;mitochondrial matrix;9.17376964263904e-20!GO:0015935;small ribosomal subunit;9.32819791538377e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.2215932089282e-19!GO:0044445;cytosolic part;1.7336325407348e-19!GO:0017111;nucleoside-triphosphatase activity;2.02888849839151e-19!GO:0044455;mitochondrial membrane part;3.05045038876919e-18!GO:0006281;DNA repair;9.37293853251887e-18!GO:0022618;protein-RNA complex assembly;1.05505657001164e-17!GO:0022402;cell cycle process;1.05505657001164e-17!GO:0005783;endoplasmic reticulum;3.90706036315152e-17!GO:0008134;transcription factor binding;7.43893521270985e-17!GO:0051276;chromosome organization and biogenesis;1.41037374021497e-16!GO:0044432;endoplasmic reticulum part;2.30507660559933e-16!GO:0032553;ribonucleotide binding;2.78388797860837e-16!GO:0032555;purine ribonucleotide binding;2.78388797860837e-16!GO:0005694;chromosome;7.5611142261051e-16!GO:0044265;cellular macromolecule catabolic process;8.18087721051026e-16!GO:0015934;large ribosomal subunit;1.1188590870493e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.13483072460132e-15!GO:0051082;unfolded protein binding;1.3958753619336e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.42119406989473e-15!GO:0017076;purine nucleotide binding;1.44326788208141e-15!GO:0000278;mitotic cell cycle;1.98865370407819e-15!GO:0019941;modification-dependent protein catabolic process;2.27603734750252e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.27603734750252e-15!GO:0044257;cellular protein catabolic process;3.69806654993739e-15!GO:0005730;nucleolus;6.78218516125715e-15!GO:0008135;translation factor activity, nucleic acid binding;7.03572859443852e-15!GO:0043412;biopolymer modification;7.95915514045001e-15!GO:0005635;nuclear envelope;9.80251175351748e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.25388005398921e-14!GO:0019222;regulation of metabolic process;1.83339439968229e-14!GO:0005746;mitochondrial respiratory chain;1.84987935382138e-14!GO:0048770;pigment granule;2.66857167884531e-14!GO:0042470;melanosome;2.66857167884531e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.12585611177886e-14!GO:0005794;Golgi apparatus;4.89379947429628e-14!GO:0032559;adenyl ribonucleotide binding;6.71644199444863e-14!GO:0031965;nuclear membrane;1.21606966076119e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.26384589221982e-13!GO:0000375;RNA splicing, via transesterification reactions;1.26384589221982e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.26384589221982e-13!GO:0005524;ATP binding;1.36603480219869e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.42171303502235e-13!GO:0003954;NADH dehydrogenase activity;1.42171303502235e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.42171303502235e-13!GO:0006350;transcription;1.46497057274901e-13!GO:0043285;biopolymer catabolic process;1.46619717893371e-13!GO:0051186;cofactor metabolic process;2.34188131840542e-13!GO:0044248;cellular catabolic process;2.44929733342282e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;3.53608852964617e-13!GO:0016887;ATPase activity;4.05422342871163e-13!GO:0006605;protein targeting;4.52697295716242e-13!GO:0030554;adenyl nucleotide binding;4.59458051658717e-13!GO:0044427;chromosomal part;5.95380418886579e-13!GO:0016192;vesicle-mediated transport;6.06676172463688e-13!GO:0009719;response to endogenous stimulus;7.40466001414655e-13!GO:0006260;DNA replication;7.47874854637682e-13!GO:0044453;nuclear membrane part;1.07757280680165e-12!GO:0016604;nuclear body;1.08417334414062e-12!GO:0006323;DNA packaging;1.32121351814078e-12!GO:0042623;ATPase activity, coupled;1.56417282634321e-12!GO:0006464;protein modification process;1.84328471734318e-12!GO:0031323;regulation of cellular metabolic process;2.07942594858633e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.42464144409363e-12!GO:0005761;mitochondrial ribosome;2.43591386831167e-12!GO:0000313;organellar ribosome;2.43591386831167e-12!GO:0022403;cell cycle phase;2.61629992944279e-12!GO:0000087;M phase of mitotic cell cycle;3.8244213188382e-12!GO:0007067;mitosis;3.8244213188382e-12!GO:0050794;regulation of cellular process;3.87557426066308e-12!GO:0005789;endoplasmic reticulum membrane;3.88723950590901e-12!GO:0003743;translation initiation factor activity;3.90610782587023e-12!GO:0009057;macromolecule catabolic process;7.70272088102554e-12!GO:0016568;chromatin modification;1.00285437067999e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.17944285081579e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.72865437805985e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.73811279266447e-11!GO:0045271;respiratory chain complex I;1.73811279266447e-11!GO:0005747;mitochondrial respiratory chain complex I;1.73811279266447e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.80424402463687e-11!GO:0042773;ATP synthesis coupled electron transport;1.80424402463687e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.82077610264749e-11!GO:0042254;ribosome biogenesis and assembly;2.04309878835054e-11!GO:0016607;nuclear speck;2.73261039547469e-11!GO:0032774;RNA biosynthetic process;3.04084299830193e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.07130184785335e-11!GO:0015630;microtubule cytoskeleton;3.31404870219643e-11!GO:0010468;regulation of gene expression;4.06467906213625e-11!GO:0006351;transcription, DNA-dependent;4.12174234881995e-11!GO:0006732;coenzyme metabolic process;4.4403780650734e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.45848648666409e-11!GO:0043687;post-translational protein modification;5.25094649326166e-11!GO:0030163;protein catabolic process;7.72616029526084e-11!GO:0008565;protein transporter activity;7.79580798888378e-11!GO:0003712;transcription cofactor activity;8.13215771263902e-11!GO:0004386;helicase activity;9.05400464345211e-11!GO:0051301;cell division;9.66625722201702e-11!GO:0006413;translational initiation;9.97529046064132e-11!GO:0006366;transcription from RNA polymerase II promoter;1.674171059593e-10!GO:0005643;nuclear pore;1.79428289764108e-10!GO:0000279;M phase;2.43176581136341e-10!GO:0006446;regulation of translational initiation;2.95234917048585e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.19907847364611e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.27335696768073e-10!GO:0006913;nucleocytoplasmic transport;3.84224873208457e-10!GO:0031982;vesicle;4.10054624492382e-10!GO:0048193;Golgi vesicle transport;4.1069873715661e-10!GO:0006403;RNA localization;6.18650533671836e-10!GO:0008639;small protein conjugating enzyme activity;6.93706445675526e-10!GO:0050657;nucleic acid transport;7.75967295497289e-10!GO:0051236;establishment of RNA localization;7.75967295497289e-10!GO:0050658;RNA transport;7.75967295497289e-10!GO:0031988;membrane-bound vesicle;8.60114376223311e-10!GO:0045449;regulation of transcription;9.23974859280129e-10!GO:0051169;nuclear transport;9.7426697715784e-10!GO:0004842;ubiquitin-protein ligase activity;1.0249988485659e-09!GO:0031410;cytoplasmic vesicle;1.05848988729673e-09!GO:0005793;ER-Golgi intermediate compartment;1.21721451818157e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.82594026927703e-09!GO:0006399;tRNA metabolic process;2.67539652102498e-09!GO:0019787;small conjugating protein ligase activity;3.10744837124747e-09!GO:0051726;regulation of cell cycle;3.24884058434478e-09!GO:0006163;purine nucleotide metabolic process;3.3150551281661e-09!GO:0009259;ribonucleotide metabolic process;3.8627559526697e-09!GO:0000074;regulation of progression through cell cycle;4.0845861230469e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.77873234130239e-09!GO:0065002;intracellular protein transport across a membrane;4.89120694367154e-09!GO:0008026;ATP-dependent helicase activity;7.01467717444646e-09!GO:0006355;regulation of transcription, DNA-dependent;7.445944395373e-09!GO:0016881;acid-amino acid ligase activity;8.06228835884849e-09!GO:0003677;DNA binding;9.05112812034117e-09!GO:0006164;purine nucleotide biosynthetic process;1.0612692657845e-08!GO:0046930;pore complex;1.41627072298636e-08!GO:0009150;purine ribonucleotide metabolic process;1.62505008172929e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.73691697299183e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.73691697299183e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.73691697299183e-08!GO:0015986;ATP synthesis coupled proton transport;2.38162518094303e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.38162518094303e-08!GO:0009260;ribonucleotide biosynthetic process;3.1321997466755e-08!GO:0051028;mRNA transport;3.32671312721952e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.73347068498084e-08!GO:0050789;regulation of biological process;4.08023395104202e-08!GO:0048475;coated membrane;5.10921433075359e-08!GO:0030117;membrane coat;5.10921433075359e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.21827976819644e-08!GO:0043038;amino acid activation;6.26094327893396e-08!GO:0006418;tRNA aminoacylation for protein translation;6.26094327893396e-08!GO:0043039;tRNA aminoacylation;6.26094327893396e-08!GO:0009141;nucleoside triphosphate metabolic process;6.35547576858935e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.5654095976374e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.5654095976374e-08!GO:0045333;cellular respiration;6.82610447294255e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.87080393946583e-08!GO:0019829;cation-transporting ATPase activity;7.47086007829177e-08!GO:0009060;aerobic respiration;7.71160018820936e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.7991074863401e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.7991074863401e-08!GO:0009056;catabolic process;1.04808668300653e-07!GO:0017038;protein import;1.04808668300653e-07!GO:0009055;electron carrier activity;1.08043049333088e-07!GO:0006461;protein complex assembly;1.28250993690462e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.43352039032031e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.43352039032031e-07!GO:0006261;DNA-dependent DNA replication;1.55784843157948e-07!GO:0032446;protein modification by small protein conjugation;1.57687474263959e-07!GO:0044431;Golgi apparatus part;2.79172665879349e-07!GO:0046034;ATP metabolic process;2.79981735591919e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.83201792129069e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.00864247030745e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.00864247030745e-07!GO:0043566;structure-specific DNA binding;3.30549704724317e-07!GO:0006754;ATP biosynthetic process;3.92417713794218e-07!GO:0006753;nucleoside phosphate metabolic process;3.92417713794218e-07!GO:0016567;protein ubiquitination;4.94021169295696e-07!GO:0006364;rRNA processing;5.04910894654867e-07!GO:0003697;single-stranded DNA binding;5.30034856288374e-07!GO:0031324;negative regulation of cellular metabolic process;5.48549171649858e-07!GO:0016072;rRNA metabolic process;6.55240996890642e-07!GO:0006752;group transfer coenzyme metabolic process;6.62451469195464e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.23070347734654e-07!GO:0051188;cofactor biosynthetic process;9.88550115169906e-07!GO:0000785;chromatin;1.11930197666656e-06!GO:0005874;microtubule;1.18121463635927e-06!GO:0030120;vesicle coat;1.28698908061776e-06!GO:0030662;coated vesicle membrane;1.28698908061776e-06!GO:0016779;nucleotidyltransferase activity;1.51617327530915e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.72827048621046e-06!GO:0000245;spliceosome assembly;1.81304243166066e-06!GO:0006333;chromatin assembly or disassembly;2.42379479178527e-06!GO:0005768;endosome;2.63563964753573e-06!GO:0045259;proton-transporting ATP synthase complex;2.64381831709906e-06!GO:0065004;protein-DNA complex assembly;2.73340597217315e-06!GO:0016564;transcription repressor activity;2.75707131698567e-06!GO:0006099;tricarboxylic acid cycle;2.75707131698567e-06!GO:0046356;acetyl-CoA catabolic process;2.75707131698567e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.03092479794352e-06!GO:0051187;cofactor catabolic process;3.10647882819103e-06!GO:0009892;negative regulation of metabolic process;3.47565013964081e-06!GO:0005667;transcription factor complex;3.6249380078872e-06!GO:0007017;microtubule-based process;5.07947519620598e-06!GO:0003714;transcription corepressor activity;5.41985567765363e-06!GO:0000775;chromosome, pericentric region;5.9159864024281e-06!GO:0009109;coenzyme catabolic process;6.02332735353505e-06!GO:0043623;cellular protein complex assembly;7.4712212157887e-06!GO:0009108;coenzyme biosynthetic process;7.47987837849009e-06!GO:0006613;cotranslational protein targeting to membrane;7.47987837849009e-06!GO:0009117;nucleotide metabolic process;7.47987837849009e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.65415719572933e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.8750369925005e-06!GO:0006084;acetyl-CoA metabolic process;1.01923587374485e-05!GO:0016563;transcription activator activity;1.19203816548962e-05!GO:0000139;Golgi membrane;1.2017072883307e-05!GO:0005798;Golgi-associated vesicle;1.24110569615014e-05!GO:0016853;isomerase activity;1.27213406638736e-05!GO:0016740;transferase activity;1.30849453372104e-05!GO:0005788;endoplasmic reticulum lumen;1.32059906612631e-05!GO:0000075;cell cycle checkpoint;1.36411572965918e-05!GO:0003724;RNA helicase activity;1.70539130979401e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.91100249723231e-05!GO:0016741;transferase activity, transferring one-carbon groups;2.29126452619336e-05!GO:0005819;spindle;2.41737112199015e-05!GO:0016787;hydrolase activity;2.70349605250922e-05!GO:0051170;nuclear import;2.75719603948486e-05!GO:0005813;centrosome;2.86914550843514e-05!GO:0045045;secretory pathway;2.90561072184363e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.91597357232905e-05!GO:0043021;ribonucleoprotein binding;2.91597357232905e-05!GO:0003899;DNA-directed RNA polymerase activity;3.0179778147287e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.11649073351996e-05!GO:0031072;heat shock protein binding;3.18674085872082e-05!GO:0007005;mitochondrion organization and biogenesis;3.45738594649525e-05!GO:0003729;mRNA binding;3.55308908260266e-05!GO:0048471;perinuclear region of cytoplasm;3.64177861324331e-05!GO:0008168;methyltransferase activity;3.68010875806418e-05!GO:0003713;transcription coactivator activity;3.74384926851454e-05!GO:0006606;protein import into nucleus;4.14206623769692e-05!GO:0006793;phosphorus metabolic process;4.25581226666014e-05!GO:0006796;phosphate metabolic process;4.25581226666014e-05!GO:0016859;cis-trans isomerase activity;4.5979452688551e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.59916985509395e-05!GO:0000151;ubiquitin ligase complex;4.63004227993364e-05!GO:0016481;negative regulation of transcription;5.09070786064566e-05!GO:0008654;phospholipid biosynthetic process;6.42613968560312e-05!GO:0000314;organellar small ribosomal subunit;9.35496757133188e-05!GO:0005763;mitochondrial small ribosomal subunit;9.35496757133188e-05!GO:0003924;GTPase activity;9.461255046651e-05!GO:0051427;hormone receptor binding;0.000106557813704678!GO:0030867;rough endoplasmic reticulum membrane;0.000111093927765582!GO:0016363;nuclear matrix;0.00012284591466454!GO:0005815;microtubule organizing center;0.00012284591466454!GO:0005770;late endosome;0.00012918201096045!GO:0051168;nuclear export;0.00015155405679683!GO:0051329;interphase of mitotic cell cycle;0.000177865126644556!GO:0065007;biological regulation;0.000178431684717009!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000178586378240022!GO:0008094;DNA-dependent ATPase activity;0.000185408175533741!GO:0005762;mitochondrial large ribosomal subunit;0.000185408175533741!GO:0000315;organellar large ribosomal subunit;0.000185408175533741!GO:0005839;proteasome core complex (sensu Eukaryota);0.000190819921130399!GO:0006402;mRNA catabolic process;0.000195359065741386!GO:0006338;chromatin remodeling;0.000195371620881946!GO:0007051;spindle organization and biogenesis;0.000195416157116341!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00020510410705426!GO:0015399;primary active transmembrane transporter activity;0.00020510410705426!GO:0035257;nuclear hormone receptor binding;0.000207373046818027!GO:0015631;tubulin binding;0.000214795559674073!GO:0051052;regulation of DNA metabolic process;0.000215529151155922!GO:0008186;RNA-dependent ATPase activity;0.000232141866905422!GO:0019899;enzyme binding;0.00025131546934311!GO:0045786;negative regulation of progression through cell cycle;0.000277730224906371!GO:0005657;replication fork;0.000280832661448826!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000321399017264465!GO:0005525;GTP binding;0.000331964105945657!GO:0044440;endosomal part;0.000347773451001299!GO:0010008;endosome membrane;0.000347773451001299!GO:0005637;nuclear inner membrane;0.00035577505544188!GO:0006915;apoptosis;0.00037126602983235!GO:0012501;programmed cell death;0.000371344800739066!GO:0003690;double-stranded DNA binding;0.000428804799643289!GO:0016126;sterol biosynthetic process;0.000470990744388999!GO:0051325;interphase;0.000516527093962827!GO:0016310;phosphorylation;0.000517991415193892!GO:0008250;oligosaccharyl transferase complex;0.000533293575690892!GO:0030118;clathrin coat;0.000556322251926427!GO:0005048;signal sequence binding;0.000577451995060074!GO:0003702;RNA polymerase II transcription factor activity;0.000581984581825369!GO:0000059;protein import into nucleus, docking;0.000608800907590741!GO:0009165;nucleotide biosynthetic process;0.000676553796194861!GO:0015980;energy derivation by oxidation of organic compounds;0.000686761823862575!GO:0004004;ATP-dependent RNA helicase activity;0.00069496399191507!GO:0048523;negative regulation of cellular process;0.000708979384644973!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000709769053516958!GO:0006612;protein targeting to membrane;0.000711202133571389!GO:0004298;threonine endopeptidase activity;0.000718441554395344!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000720820702496839!GO:0003682;chromatin binding;0.00073073656254124!GO:0008652;amino acid biosynthetic process;0.000735746933125584!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000788706393358163!GO:0004576;oligosaccharyl transferase activity;0.000799418695059976!GO:0000049;tRNA binding;0.000822737883632672!GO:0051246;regulation of protein metabolic process;0.000869341044150784!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000886534857427129!GO:0043681;protein import into mitochondrion;0.000982235542812625!GO:0006818;hydrogen transport;0.000985178234330908!GO:0030658;transport vesicle membrane;0.00102890517628171!GO:0051920;peroxiredoxin activity;0.00102913599713541!GO:0005905;coated pit;0.0010440474278414!GO:0018196;peptidyl-asparagine modification;0.00106194410371873!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00106194410371873!GO:0015992;proton transport;0.00106520061467083!GO:0019843;rRNA binding;0.00107148653822398!GO:0008270;zinc ion binding;0.00108916175407432!GO:0043414;biopolymer methylation;0.00109398909361333!GO:0051789;response to protein stimulus;0.0010980319951123!GO:0006986;response to unfolded protein;0.0010980319951123!GO:0003746;translation elongation factor activity;0.00111201160241029!GO:0006401;RNA catabolic process;0.00111201160241029!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00112441899112815!GO:0007059;chromosome segregation;0.00115846812880668!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00117189597608405!GO:0048500;signal recognition particle;0.00120146022625507!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00120146022625507!GO:0006595;polyamine metabolic process;0.00127316138965142!GO:0046467;membrane lipid biosynthetic process;0.00128728298490734!GO:0005875;microtubule associated complex;0.00132332678514079!GO:0012506;vesicle membrane;0.00132826961894074!GO:0006352;transcription initiation;0.00135142796066813!GO:0000776;kinetochore;0.00138313517794986!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0014838434478132!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0014838434478132!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0014838434478132!GO:0045454;cell redox homeostasis;0.00158052953502871!GO:0006383;transcription from RNA polymerase III promoter;0.00168559772007899!GO:0003684;damaged DNA binding;0.00171309942063621!GO:0008219;cell death;0.00192282942223213!GO:0016265;death;0.00192282942223213!GO:0007010;cytoskeleton organization and biogenesis;0.00198654356705139!GO:0030133;transport vesicle;0.00204991714204093!GO:0046489;phosphoinositide biosynthetic process;0.00205213890090997!GO:0051252;regulation of RNA metabolic process;0.0020858500091503!GO:0006405;RNA export from nucleus;0.00210509278166484!GO:0006695;cholesterol biosynthetic process;0.0021282513866044!GO:0044433;cytoplasmic vesicle part;0.00214973195785236!GO:0008610;lipid biosynthetic process;0.00215948659820996!GO:0046474;glycerophospholipid biosynthetic process;0.00219330962786638!GO:0006414;translational elongation;0.00224477406109066!GO:0030660;Golgi-associated vesicle membrane;0.0022780213836834!GO:0032259;methylation;0.00234601483538!GO:0030135;coated vesicle;0.00238070520971951!GO:0051287;NAD binding;0.00260451327656679!GO:0031497;chromatin assembly;0.00263035017575048!GO:0006302;double-strand break repair;0.00267694397239445!GO:0030176;integral to endoplasmic reticulum membrane;0.00277624786224697!GO:0006650;glycerophospholipid metabolic process;0.00279553902350006!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00279567776624077!GO:0008312;7S RNA binding;0.00286932325383233!GO:0008017;microtubule binding;0.00297303070355984!GO:0043492;ATPase activity, coupled to movement of substances;0.00306173856751776!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00308386628787049!GO:0045047;protein targeting to ER;0.00308386628787049!GO:0032508;DNA duplex unwinding;0.00309672948794269!GO:0032392;DNA geometric change;0.00309672948794269!GO:0030880;RNA polymerase complex;0.00316857631182788!GO:0033116;ER-Golgi intermediate compartment membrane;0.00334728739728777!GO:0008033;tRNA processing;0.00351036880175824!GO:0005741;mitochondrial outer membrane;0.00366122201651203!GO:0000096;sulfur amino acid metabolic process;0.00368966205326096!GO:0004674;protein serine/threonine kinase activity;0.00370070491667438!GO:0005791;rough endoplasmic reticulum;0.00373012934799087!GO:0031968;organelle outer membrane;0.00374056723610481!GO:0032561;guanyl ribonucleotide binding;0.00374620516164283!GO:0019001;guanyl nucleotide binding;0.00374620516164283!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00381343935566327!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00383202531417192!GO:0007093;mitotic cell cycle checkpoint;0.00411193923769145!GO:0019867;outer membrane;0.00412070545449815!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00412818801948508!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00412818801948508!GO:0006334;nucleosome assembly;0.0041583039995936!GO:0042393;histone binding;0.00422661013394188!GO:0031124;mRNA 3'-end processing;0.00422661013394188!GO:0045892;negative regulation of transcription, DNA-dependent;0.00436247197508727!GO:0051087;chaperone binding;0.00449456981682934!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00471017999673078!GO:0000228;nuclear chromosome;0.00471239780408298!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00471239780408298!GO:0030137;COPI-coated vesicle;0.00482507767736639!GO:0032940;secretion by cell;0.00484494648170046!GO:0007050;cell cycle arrest;0.00484494648170046!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00486958586383339!GO:0007088;regulation of mitosis;0.0048892840966228!GO:0051539;4 iron, 4 sulfur cluster binding;0.0049432461681521!GO:0043488;regulation of mRNA stability;0.0049432461681521!GO:0043487;regulation of RNA stability;0.0049432461681521!GO:0030659;cytoplasmic vesicle membrane;0.00506824254633812!GO:0035258;steroid hormone receptor binding;0.00514298477669448!GO:0005684;U2-dependent spliceosome;0.00520565233315847!GO:0044262;cellular carbohydrate metabolic process;0.00528484820443377!GO:0046483;heterocycle metabolic process;0.00529933936381404!GO:0030521;androgen receptor signaling pathway;0.00543531052938136!GO:0006310;DNA recombination;0.00552369526972595!GO:0030134;ER to Golgi transport vesicle;0.00556900475808365!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0056102388420314!GO:0006275;regulation of DNA replication;0.00578245712587862!GO:0016251;general RNA polymerase II transcription factor activity;0.00579497865278339!GO:0009112;nucleobase metabolic process;0.00588649782228464!GO:0008139;nuclear localization sequence binding;0.00605019402997256!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00610182733102196!GO:0000428;DNA-directed RNA polymerase complex;0.00610182733102196!GO:0003711;transcription elongation regulator activity;0.00610182733102196!GO:0006626;protein targeting to mitochondrion;0.00610182733102196!GO:0003678;DNA helicase activity;0.00610182733102196!GO:0006497;protein amino acid lipidation;0.00624851858634263!GO:0044452;nucleolar part;0.00642296122036553!GO:0016491;oxidoreductase activity;0.00648025673958617!GO:0007264;small GTPase mediated signal transduction;0.0065052683085693!GO:0042158;lipoprotein biosynthetic process;0.00656914891896139!GO:0000792;heterochromatin;0.00660990346699411!GO:0009070;serine family amino acid biosynthetic process;0.00669431147935692!GO:0046914;transition metal ion binding;0.00671457907638727!GO:0007052;mitotic spindle organization and biogenesis;0.00671457907638727!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00679673927106343!GO:0030663;COPI coated vesicle membrane;0.00686767615521316!GO:0030126;COPI vesicle coat;0.00686767615521316!GO:0040029;regulation of gene expression, epigenetic;0.00694887600426589!GO:0048519;negative regulation of biological process;0.00702876693686604!GO:0006268;DNA unwinding during replication;0.00715585998420898!GO:0009081;branched chain family amino acid metabolic process;0.00762311872146377!GO:0000097;sulfur amino acid biosynthetic process;0.00765941888948306!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00771207110178937!GO:0006091;generation of precursor metabolites and energy;0.00780672626072871!GO:0005773;vacuole;0.0078876618093885!GO:0031970;organelle envelope lumen;0.00818172558026308!GO:0031252;leading edge;0.00821253476371602!GO:0030384;phosphoinositide metabolic process;0.00855559448803234!GO:0008022;protein C-terminus binding;0.00873773961754331!GO:0006891;intra-Golgi vesicle-mediated transport;0.00883428981583597!GO:0008287;protein serine/threonine phosphatase complex;0.0089529214372995!GO:0006378;mRNA polyadenylation;0.00898488726322481!GO:0050662;coenzyme binding;0.00909027198233315!GO:0005876;spindle microtubule;0.00951485364603867!GO:0043022;ribosome binding;0.00952548911746401!GO:0016272;prefoldin complex;0.00957384696406011!GO:0005869;dynactin complex;0.00963859218327789!GO:0009067;aspartate family amino acid biosynthetic process;0.00996757449205618!GO:0022890;inorganic cation transmembrane transporter activity;0.00999790648145181!GO:0030127;COPII vesicle coat;0.0106328916427783!GO:0012507;ER to Golgi transport vesicle membrane;0.0106328916427783!GO:0043069;negative regulation of programmed cell death;0.0106543655465065!GO:0008276;protein methyltransferase activity;0.010683988479225!GO:0006270;DNA replication initiation;0.010683988479225!GO:0043284;biopolymer biosynthetic process;0.0108261727016838!GO:0006839;mitochondrial transport;0.0109200747939074!GO:0050178;phenylpyruvate tautomerase activity;0.0113769815911782!GO:0016791;phosphoric monoester hydrolase activity;0.0115823961399702!GO:0051059;NF-kappaB binding;0.0117035414447131!GO:0043066;negative regulation of apoptosis;0.0120316761534265!GO:0006376;mRNA splice site selection;0.0125249854183436!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0125249854183436!GO:0006596;polyamine biosynthetic process;0.0137758434502646!GO:0006144;purine base metabolic process;0.0137758434502646!GO:0006672;ceramide metabolic process;0.0142083643502153!GO:0005832;chaperonin-containing T-complex;0.0142773528834947!GO:0009116;nucleoside metabolic process;0.0146026719817066!GO:0008213;protein amino acid alkylation;0.0146026719817066!GO:0006479;protein amino acid methylation;0.0146026719817066!GO:0046983;protein dimerization activity;0.0147281698672131!GO:0019783;small conjugating protein-specific protease activity;0.0147281698672131!GO:0050749;apolipoprotein E receptor binding;0.0147432900860605!GO:0022406;membrane docking;0.0149791313489251!GO:0048278;vesicle docking;0.0149791313489251!GO:0042981;regulation of apoptosis;0.0155835105910743!GO:0042802;identical protein binding;0.0158426507081033!GO:0007021;tubulin folding;0.0159929600067335!GO:0006611;protein export from nucleus;0.0160264378476784!GO:0048037;cofactor binding;0.0161889632521207!GO:0016197;endosome transport;0.016350251529896!GO:0000339;RNA cap binding;0.0164049506580148!GO:0006607;NLS-bearing substrate import into nucleus;0.0164717026094179!GO:0048487;beta-tubulin binding;0.0165313293141932!GO:0003756;protein disulfide isomerase activity;0.0167193850718083!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0167193850718083!GO:0005669;transcription factor TFIID complex;0.0168214769448403!GO:0005758;mitochondrial intermembrane space;0.0168214769448403!GO:0006740;NADPH regeneration;0.0173101743985628!GO:0006098;pentose-phosphate shunt;0.0173101743985628!GO:0043067;regulation of programmed cell death;0.017485506274737!GO:0031123;RNA 3'-end processing;0.0175833833650824!GO:0005769;early endosome;0.0176178844098034!GO:0030518;steroid hormone receptor signaling pathway;0.017715542990159!GO:0005885;Arp2/3 protein complex;0.0178040323531535!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0182293883066651!GO:0006505;GPI anchor metabolic process;0.0185561801676838!GO:0004722;protein serine/threonine phosphatase activity;0.0190382938894568!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0191480260885798!GO:0004843;ubiquitin-specific protease activity;0.0193872800280717!GO:0006904;vesicle docking during exocytosis;0.020041453959569!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0205202106389329!GO:0006506;GPI anchor biosynthetic process;0.0208641559199345!GO:0046519;sphingoid metabolic process;0.0212320604691228!GO:0004221;ubiquitin thiolesterase activity;0.0214177624775329!GO:0019887;protein kinase regulator activity;0.0214281742667143!GO:0030119;AP-type membrane coat adaptor complex;0.0214983689046225!GO:0032200;telomere organization and biogenesis;0.0221252631128028!GO:0000723;telomere maintenance;0.0221252631128028!GO:0050681;androgen receptor binding;0.0227444760973508!GO:0045603;positive regulation of endothelial cell differentiation;0.0228317182600222!GO:0031625;ubiquitin protein ligase binding;0.022876531239916!GO:0007040;lysosome organization and biogenesis;0.0232006086915934!GO:0008047;enzyme activator activity;0.0232744704542812!GO:0007006;mitochondrial membrane organization and biogenesis;0.0239139423600203!GO:0000118;histone deacetylase complex;0.024081066164952!GO:0030125;clathrin vesicle coat;0.024476396101261!GO:0030665;clathrin coated vesicle membrane;0.024476396101261!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.024476396101261!GO:0006354;RNA elongation;0.024490279746145!GO:0004527;exonuclease activity;0.0245166023593335!GO:0016311;dephosphorylation;0.0248094567440111!GO:0006643;membrane lipid metabolic process;0.0250314400877994!GO:0004177;aminopeptidase activity;0.0252602920827636!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.025454775955993!GO:0044454;nuclear chromosome part;0.025454775955993!GO:0008097;5S rRNA binding;0.0255655161043143!GO:0008242;omega peptidase activity;0.0262176591199414!GO:0045893;positive regulation of transcription, DNA-dependent;0.0263194026966198!GO:0046112;nucleobase biosynthetic process;0.0263425756411674!GO:0048245;eosinophil chemotaxis;0.0265515891152301!GO:0019752;carboxylic acid metabolic process;0.0265515891152301!GO:0006284;base-excision repair;0.0271232458493601!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0276811528386978!GO:0000082;G1/S transition of mitotic cell cycle;0.0282537682388976!GO:0030132;clathrin coat of coated pit;0.0283199753353096!GO:0004860;protein kinase inhibitor activity;0.0291300431420051!GO:0030131;clathrin adaptor complex;0.0303537177382901!GO:0016790;thiolester hydrolase activity;0.0303537177382901!GO:0009309;amine biosynthetic process;0.0308432604461492!GO:0006301;postreplication repair;0.0313555374033479!GO:0006082;organic acid metabolic process;0.0316967536712363!GO:0043596;nuclear replication fork;0.0322181575595734!GO:0045941;positive regulation of transcription;0.0323942089778014!GO:0043433;negative regulation of transcription factor activity;0.0326621300538095!GO:0051053;negative regulation of DNA metabolic process;0.0326648018169903!GO:0000209;protein polyubiquitination;0.0330033313468289!GO:0046128;purine ribonucleoside metabolic process;0.0334227688605803!GO:0042278;purine nucleoside metabolic process;0.0334227688605803!GO:0005996;monosaccharide metabolic process;0.0335271838413619!GO:0031570;DNA integrity checkpoint;0.0335271838413619!GO:0006220;pyrimidine nucleotide metabolic process;0.0338273312070679!GO:0046966;thyroid hormone receptor binding;0.0342716763328245!GO:0016407;acetyltransferase activity;0.0342716763328245!GO:0004721;phosphoprotein phosphatase activity;0.0349751783042697!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.035136567080939!GO:0006730;one-carbon compound metabolic process;0.0354269975652833!GO:0000323;lytic vacuole;0.0354269975652833!GO:0005764;lysosome;0.0354269975652833!GO:0030145;manganese ion binding;0.0354314170368234!GO:0000790;nuclear chromatin;0.0356424563865686!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0357278909985516!GO:0019207;kinase regulator activity;0.0358220111389878!GO:0006520;amino acid metabolic process;0.0366814391909968!GO:0030522;intracellular receptor-mediated signaling pathway;0.0371501100652122!GO:0060164;regulation of timing of neuron differentiation;0.0371501100652122!GO:0014017;neuroblast fate commitment;0.0371501100652122!GO:0007400;neuroblast fate determination;0.0371501100652122!GO:0014016;neuroblast differentiation;0.0371501100652122!GO:0060163;subpallium neuron fate commitment;0.0371501100652122!GO:0060165;regulation of timing of subpallium neuron differentiation;0.0371501100652122!GO:0008320;protein transmembrane transporter activity;0.0377716094036705!GO:0043631;RNA polyadenylation;0.0381476567314611!GO:0045815;positive regulation of gene expression, epigenetic;0.038286728854651!GO:0000123;histone acetyltransferase complex;0.038286728854651!GO:0000781;chromosome, telomeric region;0.0387044852290739!GO:0000922;spindle pole;0.0394118945508164!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.040173739568555!GO:0015002;heme-copper terminal oxidase activity;0.040173739568555!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.040173739568555!GO:0004129;cytochrome-c oxidase activity;0.040173739568555!GO:0007004;telomere maintenance via telomerase;0.040173739568555!GO:0032594;protein transport within lipid bilayer;0.0410644227887636!GO:0032907;transforming growth factor-beta3 production;0.0410644227887636!GO:0032596;protein transport into lipid raft;0.0410644227887636!GO:0032910;regulation of transforming growth factor-beta3 production;0.0410644227887636!GO:0032595;B cell receptor transport within lipid bilayer;0.0410644227887636!GO:0033606;chemokine receptor transport within lipid bilayer;0.0410644227887636!GO:0032600;chemokine receptor transport out of lipid raft;0.0410644227887636!GO:0032599;protein transport out of lipid raft;0.0410644227887636!GO:0032597;B cell receptor transport into lipid raft;0.0410644227887636!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0410644227887636!GO:0022884;macromolecule transmembrane transporter activity;0.04118523107879!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.04118523107879!GO:0051128;regulation of cellular component organization and biogenesis;0.041499729177801!GO:0004185;serine carboxypeptidase activity;0.0419446506610659!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0420377352501439!GO:0006406;mRNA export from nucleus;0.0420707242741419!GO:0009066;aspartate family amino acid metabolic process;0.0422167771833723!GO:0035267;NuA4 histone acetyltransferase complex;0.0422238060252875!GO:0006518;peptide metabolic process;0.0427029994807991!GO:0051540;metal cluster binding;0.0428917231176487!GO:0051536;iron-sulfur cluster binding;0.0428917231176487!GO:0044450;microtubule organizing center part;0.0428917231176487!GO:0031902;late endosome membrane;0.0430141239854207!GO:0043624;cellular protein complex disassembly;0.0432778742475613!GO:0016044;membrane organization and biogenesis;0.0433114479602761!GO:0006516;glycoprotein catabolic process;0.0440416887505111!GO:0005784;translocon complex;0.0442136488528659!GO:0009083;branched chain family amino acid catabolic process;0.0446147407251318!GO:0031371;ubiquitin conjugating enzyme complex;0.0449323888749415!GO:0007034;vacuolar transport;0.0450484389621105!GO:0019318;hexose metabolic process;0.0451681645896285!GO:0008143;poly(A) binding;0.0457821645327725!GO:0030433;ER-associated protein catabolic process;0.0459547815215124!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0459547815215124!GO:0006984;ER-nuclear signaling pathway;0.046558371188466!GO:0007019;microtubule depolymerization;0.0466629224787286!GO:0006564;L-serine biosynthetic process;0.0467603983586836!GO:0017166;vinculin binding;0.0467885635721215!GO:0030742;GTP-dependent protein binding;0.0468890441746816!GO:0051101;regulation of DNA binding;0.0471268070236694!GO:0000086;G2/M transition of mitotic cell cycle;0.047892394946326!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0481412465240337!GO:0000287;magnesium ion binding;0.0485628696307301!GO:0042769;DNA damage response, detection of DNA damage;0.0487231619676429!GO:0002018;renin-angiotensin regulation of aldosterone production;0.049034586298545!GO:0048143;astrocyte activation;0.049034586298545!GO:0046622;positive regulation of organ growth;0.049034586298545!GO:0031701;angiotensin receptor binding;0.049034586298545!GO:0031703;type 2 angiotensin receptor binding;0.049034586298545!GO:0045723;positive regulation of fatty acid biosynthetic process;0.049034586298545!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.049034586298545!GO:0042756;drinking behavior;0.049034586298545!GO:0002019;angiotensin mediated regulation of renal output;0.049034586298545!GO:0031702;type 1 angiotensin receptor binding;0.049034586298545!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.049034586298545!GO:0008216;spermidine metabolic process;0.0491324443994889!GO:0030027;lamellipodium;0.0493773690764742
|sample_id=10615
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=stomach
|top_motifs=ONECUT1,2:2.45397804939;AIRE:2.35171051439;DBP:2.12973818514;PAX4:2.08186354449;HNF1A:2.00930383943;AHR_ARNT_ARNT2:1.98987045103;ZBTB16:1.90293785848;PPARG:1.88858885071;NKX2-3_NKX2-5:1.82686264196;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.77295782841;YY1:1.76405541384;POU6F1:1.73757794133;BREu{core}:1.71810340457;FOXA2:1.56202218699;bHLH_family:1.51798175615;RFX1:1.4297733393;PBX1:1.41430272809;NRF1:1.36750187088;FOX{F1,F2,J1}:1.33491128286;PDX1:1.32860487439;RFX2..5_RFXANK_RFXAP:1.3061534801;ZNF143:1.29949089547;NKX6-1,2:1.29886188277;NFY{A,B,C}:1.2936979211;LMO2:1.28354096384;ARID5B:1.25524352167;PITX1..3:1.25275449372;POU1F1:1.24190956199;FOXQ1:1.17510721189;ZFP161:1.16406789674;FOXP1:1.14689882847;CUX2:1.14080978475;PAX3,7:1.13639522148;ALX1:1.11726472007;MED-1{core}:1.10228337989;TFDP1:1.09712841449;SREBF1,2:1.09617729645;NKX2-1,4:1.07461294836;RBPJ:1.00551751329;NKX3-1:0.990060373002;HNF4A_NR2F1,2:0.970505397874;EVI1:0.943809400613;ZIC1..3:0.928619665094;ELK1,4_GABP{A,B1}:0.910035502867;VSX1,2:0.87709295341;TGIF1:0.867723832523;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.828787134732;RREB1:0.825655945704;E2F1..5:0.825547144747;PATZ1:0.783571019506;CREB1:0.775905453021;GFI1:0.74158257682;MYFfamily:0.738719496872;NANOG:0.717049042513;TOPORS:0.700599541468;HOX{A6,A7,B6,B7}:0.699524005555;MYOD1:0.679703647859;SOX{8,9,10}:0.551587249398;RORA:0.5161833073;NHLH1,2:0.515637812101;SNAI1..3:0.513791672502;IKZF2:0.509062437457;REST:0.496407764057;NKX3-2:0.488124903452;CDX1,2,4:0.441807608536;ATF5_CREB3:0.437101536681;ADNP_IRX_SIX_ZHX:0.426110577049;ATF6:0.424688736683;EN1,2:0.412212528025;HIC1:0.403369389665;TFAP2B:0.35780881591;FOX{D1,D2}:0.324833965859;UFEwm:0.308546576095;MTE{core}:0.291782085928;FOXN1:0.28655955864;GATA6:0.283109869537;XCPE1{core}:0.269182256201;EGR1..3:0.237271696212;HIF1A:0.21254146811;BPTF:0.203203400008;MYB:0.191393079201;MZF1:0.177254243582;SP1:0.145887256334;STAT5{A,B}:0.135926153458;ATF4:0.135172674749;MAZ:0.131743105816;ATF2:0.13076946916;CRX:0.125394740871;GATA4:0.123385617166;ZNF384:0.113274143181;GCM1,2:0.109063300421;XBP1:0.102106092724;NR6A1:0.101533557022;FOXM1:0.101424229107;PAX5:0.0708610522377;RXR{A,B,G}:0.0540606407996;FOXD3:0.0431361290178;PRRX1,2:0.0315716374445;ZEB1:0.0240990962013;FOXP3:0.00541506268171;SOX17:-0.00283893351883;GZF1:-0.00613595826428;ZBTB6:-0.0347319857757;KLF4:-0.0399588531018;LHX3,4:-0.041140246079;HOX{A4,D4}:-0.0522199066301;HMGA1,2:-0.0753117549273;ZNF423:-0.0777599099158;OCT4_SOX2{dimer}:-0.0882761119278;ESR1:-0.093785267552;MEF2{A,B,C,D}:-0.118415441028;GFI1B:-0.187019764619;PAX8:-0.215384847764;TBX4,5:-0.244060265907;CDC5L:-0.259777274633;SOX5:-0.277676126951;RXRA_VDR{dimer}:-0.293631536323;PAX2:-0.310727370493;PAX1,9:-0.317717979499;POU2F1..3:-0.329469085502;GTF2I:-0.35692647951;CEBPA,B_DDIT3:-0.363811307749;HOXA9_MEIS1:-0.379871711936;HAND1,2:-0.395414495082;TBP:-0.417061555484;MTF1:-0.439920411234;JUN:-0.441601478527;NFE2:-0.443303643514;MAFB:-0.470456341721;FOX{I1,J2}:-0.498661494143;HBP1_HMGB_SSRP1_UBTF:-0.516800936188;ESRRA:-0.519708739595;TLX2:-0.550736351994;PAX6:-0.555213942726;POU5F1:-0.568247581398;STAT1,3:-0.570684676595;EBF1:-0.576525714886;TAL1_TCF{3,4,12}:-0.582356602639;FOSL2:-0.585087362583;NFKB1_REL_RELA:-0.594518137556;EP300:-0.600089518574;FOXL1:-0.604359142434;FOXO1,3,4:-0.605928581623;HLF:-0.608552347235;ELF1,2,4:-0.669032945551;NFE2L2:-0.673752892083;SPIB:-0.676116132791;T:-0.691298869456;SPI1:-0.69372908509;AR:-0.714034726101;BACH2:-0.726741309707;HES1:-0.736832988847;SOX2:-0.757695119867;POU3F1..4:-0.778094501086;IRF7:-0.79419822485;ALX4:-0.801341558928;RUNX1..3:-0.84497188654;FOS_FOS{B,L1}_JUN{B,D}:-0.882739876162;SPZ1:-0.883023061691;GTF2A1,2:-0.905493030445;HSF1,2:-0.922128114761;TLX1..3_NFIC{dimer}:-0.935487300596;TEF:-0.977234563645;TFAP2{A,C}:-0.994086650735;DMAP1_NCOR{1,2}_SMARC:-0.994744446737;NFIX:-1.01777468369;NFE2L1:-1.04381624908;SMAD1..7,9:-1.07216061977;NKX2-2,8:-1.13251059499;NR5A1,2:-1.13351640209;STAT2,4,6:-1.1450870745;IKZF1:-1.15992552839;ZNF238:-1.1637883135;ETS1,2:-1.18688617299;IRF1,2:-1.18773480752;HOX{A5,B5}:-1.19831394351;TFAP4:-1.20173029912;PRDM1:-1.21177665205;TP53:-1.21284230355;NFATC1..3:-1.23308603263;GLI1..3:-1.24857780147;NR3C1:-1.27072538226;TFCP2:-1.29494552997;MYBL2:-1.34473551511;LEF1_TCF7_TCF7L1,2:-1.38640011143;NANOG{mouse}:-1.39423988325;NR1H4:-1.43635089317;SRF:-1.4755086136;NFIL3:-1.51884470768;TEAD1:-1.54375501739;ZNF148:-1.76127788547;HMX1:-2.26938400324
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10615-108G3;search_select_hide=table117:FF:10615-108G3
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:gastrointestinal carcinoma cell line:ECC12
Species:Human (Homo sapiens)
Library ID:CNhs11738
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexmale
age63
cell typeunclassifiable
cell lineECC12
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005730
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11738 CAGE DRX007893 DRR008765
Accession ID Hg19

Library idBAMCTSS
CNhs11738 DRZ000190 DRZ001575
Accession ID Hg38

Library idBAMCTSS
CNhs11738 DRZ011540 DRZ012925
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005730
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10077 RNA-Seq DRX057134 DRR062893
Accession ID Hg19

Library idBAMCTSS
RDhi10077 DRZ007969


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.393
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.346
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.18
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0688
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain1.079
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0688
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.395
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.119
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.288
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.133
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.107
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.137
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.226
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.248
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0431
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0333
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0688
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.318
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.447
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0688
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11738

Jaspar motifP-value
MA0002.22.32116e-4
MA0003.10.158
MA0004.10.297
MA0006.10.328
MA0007.10.09
MA0009.10.789
MA0014.10.967
MA0017.10.392
MA0018.20.0547
MA0019.10.773
MA0024.10.00972
MA0025.10.921
MA0027.10.885
MA0028.10.124
MA0029.10.725
MA0030.10.122
MA0031.10.722
MA0035.20.784
MA0038.10.102
MA0039.20.253
MA0040.10.652
MA0041.10.396
MA0042.10.479
MA0043.10.0905
MA0046.12.162e-13
MA0047.20.0927
MA0048.10.549
MA0050.14.03136e-5
MA0051.19.9138e-4
MA0052.10.416
MA0055.10.797
MA0057.10.0536
MA0058.10.202
MA0059.10.775
MA0060.11.33967e-5
MA0061.10.00448
MA0062.20.192
MA0065.20.185
MA0066.10.198
MA0067.10.833
MA0068.10.479
MA0069.10.4
MA0070.10.0234
MA0071.10.958
MA0072.10.688
MA0073.10.282
MA0074.10.541
MA0076.10.0839
MA0077.10.285
MA0078.10.711
MA0079.20.902
MA0080.21.28481e-9
MA0081.10.0479
MA0083.10.018
MA0084.10.619
MA0087.10.211
MA0088.10.903
MA0090.13.70429e-4
MA0091.10.319
MA0092.10.101
MA0093.10.212
MA0099.22.05907e-14
MA0100.10.229
MA0101.10.0173
MA0102.20.16
MA0103.10.424
MA0104.20.277
MA0105.10.00265
MA0106.10.0677
MA0107.10.00473
MA0108.20.739
MA0111.10.906
MA0112.21.56234e-4
MA0113.10.135
MA0114.10.854
MA0115.10.0878
MA0116.10.0121
MA0117.10.756
MA0119.10.0359
MA0122.10.271
MA0124.10.431
MA0125.10.263
MA0131.10.303
MA0135.10.0563
MA0136.15.91473e-7
MA0137.20.0814
MA0138.20.97
MA0139.10.547
MA0140.10.438
MA0141.10.274
MA0142.10.325
MA0143.10.584
MA0144.10.0668
MA0145.10.0299
MA0146.10.188
MA0147.10.423
MA0148.10.335
MA0149.10.0703
MA0150.10.00508
MA0152.10.759
MA0153.14.33561e-8
MA0154.10.0147
MA0155.10.368
MA0156.10.00151
MA0157.10.791
MA0159.10.134
MA0160.10.334
MA0162.10.0651
MA0163.10.0213
MA0164.10.853
MA0258.10.0361
MA0259.10.247



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11738

Novel motifP-value
10.183
100.328
1000.533
1010.682
1020.905
1030.0955
1040.931
1050.192
1068.59514e-4
1070.0741
1080.801
1090.144
110.0447
1100.24
1110.212
1120.338
1130.0196
1140.0783
1150.349
1160.454
1170.426
1180.99
1190.209
120.66
1200.848
1210.914
1220.673
1230.611
1240.0619
1250.454
1260.945
1270.0397
1280.0114
1290.0914
130.709
1300.0613
1310.379
1320.866
1330.631
1340.624
1350.00529
1360.499
1370.0307
1380.471
1390.27
140.632
1400.16
1410.442
1420.687
1431.76259e-4
1440.411
1450.275
1460.474
1470.978
1480.0485
1490.0612
150.167
1500.344
1510.182
1520.0424
1530.718
1540.605
1550.303
1560.863
1570.607
1580.319
1590.218
160.206
1600.0949
1610.35
1620.658
1630.76
1640.921
1650.243
1660.796
1670.743
1680.194
1690.00816
170.127
180.182
190.247
20.284
200.225
210.558
220.115
230.00853
240.18
250.756
260.292
270.109
280.883
290.459
30.132
300.214
310.732
320.0248
330.36
340.223
350.728
360.931
370.0709
380.396
390.0883
40.744
400.422
410.16
420.272
430.214
440.931
450.178
460.102
470.229
480.229
490.331
50.228
500.669
510.138
520.127
530.276
540.142
550.182
560.377
570.426
580.595
590.0938
60.53
600.0306
610.744
620.25
630.0861
640.453
650.125
660.884
670.683
680.303
690.998
70.821
700.147
710.0269
720.0988
730.123
740.257
750.479
760.765
770.107
780.361
790.433
80.202
800.236
810.209
820.119
830.0866
840.421
850.00833
860.372
870.195
880.926
890.0186
90.113
900.218
910.129
920.196
930.984
940.0444
950.41
960.117
970.816
980.429
990.673



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11738


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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