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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00004732
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000480,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0001008,UBERON:0001062,UBERON:0002100,UBERON:0002113,UBERON:0002417,UBERON:0003103,UBERON:0005095,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005423,UBERON:0006554,UBERON:0007687
|accession_numbers=CAGE;DRX007871;DRR008743;DRZ000168;DRZ001553;DRZ011518;DRZ012903
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100067,FF:0102733,FF:0100669,FF:0100007
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chrX:84498989..84499003,+!p1@ZNF711!2.45!377.84!ZNF711;;chr7:27205136..27205164,-!p1@HOXA9!1.92!81.91!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.54!33.80!HOXA10;;chr17:46703687..46703740,-!p1@HOXB9!1.54!33.59!HOXB9;;chr8:80679993..80680011,-!p1@HEY1!1.48!41.89!HEY1;;chr12:54393880..54393962,+!p1@HOXC9!1.47!28.31!HOXC9;;chr7:27224842..27224872,-!p1@HOXA11!1.43!25.82!HOXA11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.38!22.92!HOXC5;;chr6:10412600..10412637,-!p1@TFAP2A!1.37!36.91!TFAP2A;;chr2:172967621..172967637,-!p1@DLX2!1.36!57.86!DLX2;;chr7:27192185..27192209,-!p1@HOXA3!1.36!21.88!HOXA3;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.18!HOXD11;;chr7:27205106..27205134,-!p2@HOXA9!1.26!17.32!HOXA9;;chr7:27179814..27179840,-!p4@HOXA3!1.26!17.11!HOXA3;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.89!PITX1;;chr6:1389789..1389821,+!p1@FOXF2!1.24!22.19!FOXF2;;chr18:19749541..19749557,+!p1@GATA6!1.23!50.08!GATA6;;chr17:46667594..46667619,-!p1@HOXB3!1.22!15.76!HOXB3;;chr6:10415276..10415341,-!p2@TFAP2A!1.21!18.66!TFAP2A;;chr7:27224795..27224840,-!p2@HOXA11!1.21!15.14!HOXA11;;chr6:19837592..19837621,+!p1@ID4!1.20!89.17!ID4;;chr14:38064429..38064486,-!p1@FOXA1!1.20!14.83!FOXA1;;chr8:25902876..25902936,-!p1@EBF2!1.19!14.62!EBF2;;chr20:42295713..42295738,+!p2@MYBL2!1.18!82.02!MYBL2;;chr2:176969179..176969226,+!p2@HOXD11!1.18!14.10!HOXD11;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.00!HOXB6;;chr5:172662197..172662216,-!p1@NKX2-5!1.17!13.79!NKX2-5;;chr6:21597765..21597779,+!p2@SOX4!1.16!108.56!SOX4;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.45!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.58!GATA4;;chr7:27183263..27183284,-!p2@HOXA5!1.14!12.86!HOXA5;;chr20:42295745..42295765,+!p1@MYBL2!1.10!190.16!MYBL2;;chr15:76629123..76629151,+!p1@ISL2!1.09!12.44!ISL2;;chr6:20402102..20402152,+!p1@E2F3!1.08!45.62!E2F3;;chr14:37131058..37131139,+!p1@PAX9!1.08!11.09!PAX9;;chr17:46622070..46622109,-!p1@HOXB2!1.07!24.37!HOXB2;;chr6:1610293..1610310,+!p1@FOXC1!1.07!18.25!FOXC1;;chr2:176972000..176972025,+!p4@HOXD11!1.07!10.68!HOXD11;;chr13:72441315..72441454,-!p1@DACH1!1.06!21.05!DACH1;;chr21:38071430..38071456,+!p1@SIM2!1.05!10.16!SIM2;;chr16:29818160..29818188,+!p6@MAZ!1.04!47.18!MAZ;;chr6:126070769..126070801,+!p1@HEY2!1.04!11.41!HEY2;;chr5:72744594..72744609,-!p1@FOXD1!1.02!44.38!FOXD1;;chr2:200322654..200322707,-!p2@SATB2!1.02!13.79!SATB2;;chr7:27183291..27183324,-!p1@HOXA5!1.02!9.44!HOXA5;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.33!ALX1;;chr2:223163706..223163730,-!p1@PAX3!1.01!9.23!PAX3;;chr1:3569072..3569093,+!p1@TP73!1.01!9.12!TP73;;chr7:27239703..27239715,-!p1@HOXA13!1.01!9.12!HOXA13;;chr16:29818199..29818216,+!p11@MAZ!0.99!14.52!MAZ;;chr1:935467..935484,-!p1@HES4!0.98!39.19!HES4;;chr14:61116183..61116208,-!p1@SIX1!0.97!32.25!SIX1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.97!8.40!EN2;;chr17:46675558..46675577,-!p2@HOXB6!0.97!8.30!HOXB6;;chr6:21593973..21593988,+!p1@SOX4!0.96!299.87!SOX4;;chr2:172949484..172949522,+!p1@DLX1!0.93!7.57!DLX1;;chr22:19748231..19748317,+!p1@TBX1!0.92!7.36!TBX1;;chr14:29235961..29236008,+!p1@FOXG1!0.92!7.36!FOXG1;;chr10:102891048..102891078,+!p1@TLX1!0.92!7.26!TLX1;;chr19:23433144..23433204,-!p1@ZNF724P!0.91!33.59!ZNF724P;;chr2:176969097..176969109,+!p3@HOXD11!0.91!7.05!HOXD11;;chr12:54332608..54332636,+!p1@HOXC13!0.91!7.05!HOXC13;;chr7:35293685..35293718,-!p1@TBX20!0.90!6.95!TBX20;;chr19:21264991..21265026,+!p1@ZNF714!0.89!46.87!ZNF714;;chr1:935496..935509,-!p3@HES4!0.89!10.47!HES4;;chr2:172950227..172950249,+!p2@DLX1!0.89!6.84!DLX1;;chr13:100623375..100623425,-!p1@ZIC5!0.89!6.74!ZIC5;;chr16:29819403..29819442,+!p5@MAZ!0.88!56.72!MAZ;;chr16:54320101..54320125,-!p4@IRX3!0.88!9.54!IRX3;;chr21:38071403..38071428,+!p2@SIM2!0.88!6.64!SIM2;;chr16:51185172..51185197,-!p1@SALL1!0.88!6.53!SALL1;;chr1:23857698..23857733,-!p1@E2F2!0.86!11.72!E2F2;;chr13:100638100..100638115,+!p4@ZIC2!0.86!6.32!ZIC2;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.22!HOXA3;;chr7:28448965..28448994,+!p2@CREB5!0.85!22.60!CREB5;;chr19:24097675..24097699,+!p1@ZNF726!0.85!21.46!ZNF726;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.57!TBX18;;chr6:1612300..1612324,+!p3@FOXC1!0.85!6.12!FOXC1;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.12!PAX6;;chr9:129376201..129376225,+!p1@LMX1B!0.84!5.91!LMX1B;;chr6:85474299..85474324,-!p1@TBX18!0.83!10.68!TBX18;;chr18:19749517..19749531,+!p3@GATA6!0.83!10.68!GATA6;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.81!PITX1;;chr7:27239740..27239759,-!p2@HOXA13!0.83!5.81!HOXA13;;chr1:40105299..40105326,-!p1@HEYL!0.83!5.70!HEYL;;chr11:129245736..129245758,+!p2@BARX2!0.83!5.70!BARX2;;chr2:60780607..60780624,-!p2@BCL11A!0.82!18.25!BCL11A;;chr5:174151553..174151610,+!p1@MSX2!0.82!9.64!MSX2;;chr17:46622205..46622218,-!p3@HOXB2!0.82!6.64!HOXB2;;chr17:35294075..35294102,+!p1@ENST00000559335!0.82!5.60!LHX1;;chr18:55102598..55102623,+!p1@ONECUT2!0.82!5.60!ONECUT2;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.60!ZIC2;;chr19:22034809..22034878,-!p2@ZNF43!0.81!20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|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
|fonse_cell_line=FF:0100067,FF:0100669
|fonse_cell_line=FF:0100067,FF:0100669
|fonse_cell_line_closure=FF:0100067,FF:0100669
|fonse_cell_line_closure=FF:0100067,FF:0100669
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg38.nobarcode.ctss.bed.gz
|id=FF:10450-106F9
|id=FF:10450-106F9
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100007
|is_a=EFO:0002091;;FF:0000210;;FF:0100007
|is_obsolete=
|library_id=CNhs11046
|library_id_phase_based=2:CNhs11046
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10450
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10450
|name=embryonic kidney cell line: HEK293/SLAM untreated
|name=embryonic kidney cell line: HEK293/SLAM untreated
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11046,LSID722,release008,COMPLETED
|profile_hcage=CNhs11046,LSID722,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_box=106
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 78:
|rna_weight_ug=16.39665
|rna_weight_ug=16.39665
|sample_age=
|sample_age=
|sample_category=cell lines
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=HEK293/SLAM
|sample_cell_line=HEK293/SLAM
Line 69: Line 91:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0044424;intracellular part;0!GO:0005622;intracellular;0!GO:0043231;intracellular membrane-bound organelle;2.20150241536737e-289!GO:0043227;membrane-bound organelle;3.26375695785533e-289!GO:0043226;organelle;3.26375695785533e-289!GO:0043229;intracellular organelle;1.73825842765762e-288!GO:0044422;organelle part;6.15497385056638e-190!GO:0044446;intracellular organelle part;1.58653913323676e-188!GO:0005737;cytoplasm;3.09419786484052e-177!GO:0005634;nucleus;5.48084367895052e-152!GO:0044237;cellular metabolic process;2.40228512530341e-134!GO:0032991;macromolecular complex;8.83003313429037e-133!GO:0044238;primary metabolic process;1.23332713751448e-131!GO:0044444;cytoplasmic part;2.98125788702291e-130!GO:0043170;macromolecule metabolic process;4.35832334943018e-126!GO:0044428;nuclear part;3.77281351923812e-110!GO:0030529;ribonucleoprotein complex;4.81069983999305e-110!GO:0043233;organelle lumen;3.90991942784994e-104!GO:0031974;membrane-enclosed lumen;3.90991942784994e-104!GO:0003723;RNA binding;2.56649810590363e-90!GO:0043283;biopolymer metabolic process;7.01720858522528e-90!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.71584056136469e-87!GO:0010467;gene expression;1.62923470583388e-85!GO:0005739;mitochondrion;4.16341494266853e-84!GO:0006396;RNA processing;1.48697894434154e-70!GO:0031981;nuclear lumen;1.13238047437811e-68!GO:0043234;protein complex;4.95076174634933e-67!GO:0005515;protein binding;5.25395267838527e-65!GO:0005840;ribosome;1.67700800710526e-63!GO:0003676;nucleic acid binding;8.37800877894053e-63!GO:0006412;translation;2.84177902403977e-55!GO:0031090;organelle membrane;4.55646980154509e-54!GO:0016043;cellular component organization and biogenesis;1.12622362900381e-53!GO:0044429;mitochondrial part;1.50066035435321e-53!GO:0003735;structural constituent of ribosome;2.00592218504651e-53!GO:0016070;RNA metabolic process;1.37414996589028e-50!GO:0016071;mRNA metabolic process;1.28467800988902e-48!GO:0031967;organelle envelope;1.45314844270361e-48!GO:0031975;envelope;1.89268912458015e-48!GO:0043228;non-membrane-bound organelle;9.13405788861047e-48!GO:0043232;intracellular non-membrane-bound organelle;9.13405788861047e-48!GO:0008380;RNA splicing;9.24269747763884e-47!GO:0006259;DNA metabolic process;1.2463294091385e-46!GO:0033279;ribosomal subunit;1.43078531005383e-46!GO:0015031;protein transport;1.43078531005383e-46!GO:0033036;macromolecule localization;3.69464730981463e-46!GO:0019538;protein metabolic process;2.3914722868541e-45!GO:0009058;biosynthetic process;4.17088731612632e-45!GO:0044249;cellular biosynthetic process;9.88200741736516e-45!GO:0006397;mRNA processing;1.54155536399361e-44!GO:0005654;nucleoplasm;8.6986885514593e-43!GO:0006996;organelle organization and biogenesis;7.99112621420774e-42!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.18833466355473e-41!GO:0008104;protein localization;1.36124062221426e-41!GO:0045184;establishment of protein localization;5.071037860861e-41!GO:0009059;macromolecule biosynthetic process;1.21974234955431e-40!GO:0044267;cellular protein metabolic process;3.92384858151072e-40!GO:0044260;cellular macromolecule metabolic process;6.17972424000508e-40!GO:0046907;intracellular transport;1.27661258798327e-38!GO:0007049;cell cycle;4.14698674899884e-38!GO:0065003;macromolecular complex assembly;6.03257163951223e-38!GO:0044451;nucleoplasm part;9.66782083142452e-35!GO:0005681;spliceosome;3.20144037062034e-34!GO:0005829;cytosol;3.60675890136091e-34!GO:0022607;cellular component assembly;1.92968625166078e-33!GO:0000166;nucleotide binding;2.07506466177326e-33!GO:0005740;mitochondrial envelope;1.77545899769978e-32!GO:0006886;intracellular protein transport;2.02813707485459e-32!GO:0019866;organelle inner membrane;3.51016294739423e-32!GO:0006974;response to DNA damage stimulus;1.00396663518204e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.25792708909779e-31!GO:0031966;mitochondrial membrane;4.45477883709051e-30!GO:0000278;mitotic cell cycle;5.99232639831861e-30!GO:0005743;mitochondrial inner membrane;1.97690930065505e-29!GO:0022402;cell cycle process;2.53501042472406e-29!GO:0005730;nucleolus;1.50154897269328e-27!GO:0006281;DNA repair;2.49264295541982e-27!GO:0005694;chromosome;7.02883054913488e-27!GO:0051649;establishment of cellular localization;9.18421366104681e-26!GO:0031980;mitochondrial lumen;3.35379469333472e-25!GO:0005759;mitochondrial matrix;3.35379469333472e-25!GO:0051641;cellular localization;4.62034379263515e-25!GO:0015934;large ribosomal subunit;5.06559317170623e-25!GO:0000087;M phase of mitotic cell cycle;1.3053482644064e-24!GO:0044445;cytosolic part;2.57811272338435e-24!GO:0016874;ligase activity;3.41423754113172e-24!GO:0007067;mitosis;4.00005092019562e-24!GO:0006119;oxidative phosphorylation;5.49079327695535e-24!GO:0022403;cell cycle phase;1.08407583746491e-23!GO:0044427;chromosomal part;2.86260882508132e-23!GO:0006457;protein folding;4.04565825848388e-23!GO:0044455;mitochondrial membrane part;7.76092958368026e-23!GO:0016462;pyrophosphatase activity;9.73103378421535e-23!GO:0015935;small ribosomal subunit;1.1027965963839e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.18200002672198e-22!GO:0032553;ribonucleotide binding;1.44743414273642e-22!GO:0032555;purine ribonucleotide binding;1.44743414273642e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.71086368087336e-22!GO:0051301;cell division;1.84323365319116e-22!GO:0006260;DNA replication;1.88759358570927e-22!GO:0017076;purine nucleotide binding;7.41322012696757e-22!GO:0017111;nucleoside-triphosphatase activity;7.49148531345564e-22!GO:0012505;endomembrane system;9.17253484774619e-22!GO:0022618;protein-RNA complex assembly;1.28772217017265e-21!GO:0006512;ubiquitin cycle;1.98463053683193e-21!GO:0009719;response to endogenous stimulus;3.55008072174829e-21!GO:0051276;chromosome organization and biogenesis;4.48790910990514e-21!GO:0005524;ATP binding;1.24146833486248e-20!GO:0032559;adenyl ribonucleotide binding;1.76349830148076e-20!GO:0000279;M phase;2.2773438161536e-20!GO:0042254;ribosome biogenesis and assembly;2.58013877925962e-20!GO:0005761;mitochondrial ribosome;1.34977908438737e-19!GO:0000313;organellar ribosome;1.34977908438737e-19!GO:0030554;adenyl nucleotide binding;1.55813460957373e-19!GO:0031965;nuclear membrane;4.5566598648862e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;1.3564257976413e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.39418613791643e-18!GO:0044453;nuclear membrane part;2.40217476548329e-18!GO:0019941;modification-dependent protein catabolic process;2.50944219268143e-18!GO:0043632;modification-dependent macromolecule catabolic process;2.50944219268143e-18!GO:0000398;nuclear mRNA splicing, via spliceosome;2.63774886424876e-18!GO:0000375;RNA splicing, via transesterification reactions;2.63774886424876e-18!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.63774886424876e-18!GO:0044265;cellular macromolecule catabolic process;2.87984628314554e-18!GO:0044257;cellular protein catabolic process;4.80854545076755e-18!GO:0005746;mitochondrial respiratory chain;5.74367852036282e-18!GO:0008135;translation factor activity, nucleic acid binding;6.01281264583917e-18!GO:0008134;transcription factor binding;1.87482348804634e-17!GO:0006399;tRNA metabolic process;5.0185802167489e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.07030446782784e-17!GO:0043285;biopolymer catabolic process;7.16392026383372e-17!GO:0006605;protein targeting;7.63940022975666e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.18589653186952e-16!GO:0003954;NADH dehydrogenase activity;1.18589653186952e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.18589653186952e-16!GO:0005635;nuclear envelope;1.47060063015226e-16!GO:0005643;nuclear pore;1.67118159597876e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.67438069496974e-16!GO:0051186;cofactor metabolic process;2.81900880767532e-16!GO:0016887;ATPase activity;3.77262074234986e-16!GO:0019222;regulation of metabolic process;5.11752574997027e-16!GO:0042623;ATPase activity, coupled;6.95260150221967e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;8.78482877734637e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.13020945520691e-15!GO:0009057;macromolecule catabolic process;2.33669134125547e-15!GO:0043412;biopolymer modification;2.73561708278207e-15!GO:0016604;nuclear body;3.24825575708363e-15!GO:0004386;helicase activity;3.45428400729075e-15!GO:0006323;DNA packaging;3.7107478659392e-15!GO:0006366;transcription from RNA polymerase II promoter;3.98603884678469e-15!GO:0030163;protein catabolic process;5.41434945201905e-15!GO:0051082;unfolded protein binding;5.41670573531678e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.8059764414357e-15!GO:0042773;ATP synthesis coupled electron transport;8.8059764414357e-15!GO:0044432;endoplasmic reticulum part;1.04993305096536e-14!GO:0005783;endoplasmic reticulum;1.1713206389256e-14!GO:0044248;cellular catabolic process;1.36705412304627e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.480792184507e-14!GO:0006350;transcription;1.49140721434694e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.7382774557591e-14!GO:0045271;respiratory chain complex I;1.7382774557591e-14!GO:0005747;mitochondrial respiratory chain complex I;1.7382774557591e-14!GO:0050794;regulation of cellular process;2.48808668362693e-14!GO:0065002;intracellular protein transport across a membrane;3.18880941484137e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.86194867615173e-14!GO:0006364;rRNA processing;6.45092369769445e-14!GO:0051726;regulation of cell cycle;9.40137506407084e-14!GO:0050657;nucleic acid transport;9.47476402953324e-14!GO:0051236;establishment of RNA localization;9.47476402953324e-14!GO:0050658;RNA transport;9.47476402953324e-14!GO:0006403;RNA localization;1.03949035040294e-13!GO:0006732;coenzyme metabolic process;1.10296927567871e-13!GO:0003743;translation initiation factor activity;1.14215052851689e-13!GO:0031323;regulation of cellular metabolic process;1.30730651397351e-13!GO:0000074;regulation of progression through cell cycle;1.32283802557697e-13!GO:0006913;nucleocytoplasmic transport;1.55355428047025e-13!GO:0015630;microtubule cytoskeleton;1.69171124700651e-13!GO:0016072;rRNA metabolic process;1.70249053812639e-13!GO:0046930;pore complex;3.27945545857128e-13!GO:0048770;pigment granule;3.37348637303148e-13!GO:0042470;melanosome;3.37348637303148e-13!GO:0008026;ATP-dependent helicase activity;3.58187270367984e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.22619029276925e-13!GO:0051169;nuclear transport;4.76330951292198e-13!GO:0048193;Golgi vesicle transport;7.23059751597468e-13!GO:0006464;protein modification process;8.57755737060138e-13!GO:0006413;translational initiation;9.97314695130064e-13!GO:0008565;protein transporter activity;1.27393038392341e-12!GO:0010468;regulation of gene expression;3.3570586151537e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.69291780612907e-12!GO:0032774;RNA biosynthetic process;3.78542071548467e-12!GO:0016607;nuclear speck;3.96316310474273e-12!GO:0006351;transcription, DNA-dependent;5.93977467035309e-12!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.19408849265477e-12!GO:0009259;ribonucleotide metabolic process;7.72880802067177e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.371455544553e-12!GO:0043687;post-translational protein modification;1.06230669833573e-11!GO:0005794;Golgi apparatus;1.09840437201422e-11!GO:0051028;mRNA transport;1.14397047325543e-11!GO:0000785;chromatin;1.44228126320546e-11!GO:0065004;protein-DNA complex assembly;1.6328756443309e-11!GO:0006163;purine nucleotide metabolic process;1.87945157692526e-11!GO:0006446;regulation of translational initiation;2.12288155711704e-11!GO:0003712;transcription cofactor activity;2.30800028586998e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.3396353792081e-11!GO:0008639;small protein conjugating enzyme activity;3.34061033353261e-11!GO:0000775;chromosome, pericentric region;4.08798500010577e-11!GO:0005789;endoplasmic reticulum membrane;5.28456836772984e-11!GO:0005667;transcription factor complex;5.99457976242094e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.00507880433401e-11!GO:0004812;aminoacyl-tRNA ligase activity;6.00507880433401e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.00507880433401e-11!GO:0019787;small conjugating protein ligase activity;7.33547339643344e-11!GO:0003677;DNA binding;7.51780302848021e-11!GO:0004842;ubiquitin-protein ligase activity;8.59709961437689e-11!GO:0009055;electron carrier activity;9.95680669235849e-11!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.11281202191596e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.13855609494392e-10!GO:0017038;protein import;1.39911686232394e-10!GO:0043038;amino acid activation;1.70031313542684e-10!GO:0006418;tRNA aminoacylation for protein translation;1.70031313542684e-10!GO:0043039;tRNA aminoacylation;1.70031313542684e-10!GO:0016568;chromatin modification;1.76829924546208e-10!GO:0006461;protein complex assembly;1.77449714009179e-10!GO:0006261;DNA-dependent DNA replication;1.97852473873499e-10!GO:0009150;purine ribonucleotide metabolic process;2.08401208962612e-10!GO:0006164;purine nucleotide biosynthetic process;2.27406343988937e-10!GO:0009260;ribonucleotide biosynthetic process;3.01378213029979e-10!GO:0006333;chromatin assembly or disassembly;3.68517118869165e-10!GO:0045449;regulation of transcription;4.21538358990328e-10!GO:0005819;spindle;4.99691827678643e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.03920752652079e-10!GO:0016881;acid-amino acid ligase activity;1.06471059028449e-09!GO:0043566;structure-specific DNA binding;1.27962609151382e-09!GO:0051188;cofactor biosynthetic process;1.35679066435619e-09!GO:0050789;regulation of biological process;1.5786701470425e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.64974107234202e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.72081131445677e-09!GO:0016192;vesicle-mediated transport;1.86116280122581e-09!GO:0016779;nucleotidyltransferase activity;1.88321477472993e-09!GO:0009141;nucleoside triphosphate metabolic process;2.32361915077498e-09!GO:0016740;transferase activity;2.57971249640876e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.60744279213989e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.1579960804964e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.1579960804964e-09!GO:0006355;regulation of transcription, DNA-dependent;5.37454309511828e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.91107350506416e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.91107350506416e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.03928471383491e-09!GO:0051329;interphase of mitotic cell cycle;6.14381239801166e-09!GO:0003899;DNA-directed RNA polymerase activity;7.14349313631378e-09!GO:0007005;mitochondrion organization and biogenesis;1.08981292808584e-08!GO:0015986;ATP synthesis coupled proton transport;1.2838719932614e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.2838719932614e-08!GO:0009117;nucleotide metabolic process;1.31258809405284e-08!GO:0009060;aerobic respiration;1.55236996111445e-08!GO:0003697;single-stranded DNA binding;1.55376226155257e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.5603214518104e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.5603214518104e-08!GO:0005813;centrosome;1.88417085930791e-08!GO:0000245;spliceosome assembly;2.67763194496924e-08!GO:0051325;interphase;2.77576881486282e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.80701248790118e-08!GO:0007051;spindle organization and biogenesis;2.82901139134425e-08!GO:0032446;protein modification by small protein conjugation;3.12479537703775e-08!GO:0009108;coenzyme biosynthetic process;3.42412002287482e-08!GO:0005793;ER-Golgi intermediate compartment;3.55951857574597e-08!GO:0019829;cation-transporting ATPase activity;4.43752391663759e-08!GO:0009056;catabolic process;4.45437712518799e-08!GO:0005815;microtubule organizing center;4.54571679334058e-08!GO:0045333;cellular respiration;4.72065193648087e-08!GO:0016567;protein ubiquitination;5.55483512681519e-08!GO:0005768;endosome;6.58026087057273e-08!GO:0043623;cellular protein complex assembly;7.41553946536676e-08!GO:0046034;ATP metabolic process;8.42088448547208e-08!GO:0008654;phospholipid biosynthetic process;1.00142191504769e-07!GO:0031324;negative regulation of cellular metabolic process;1.04240548663691e-07!GO:0000075;cell cycle checkpoint;1.04712871038787e-07!GO:0006099;tricarboxylic acid cycle;1.04712871038787e-07!GO:0046356;acetyl-CoA catabolic process;1.04712871038787e-07!GO:0008033;tRNA processing;1.08196070756315e-07!GO:0008094;DNA-dependent ATPase activity;1.12759525938399e-07!GO:0005657;replication fork;1.15326218801276e-07!GO:0006084;acetyl-CoA metabolic process;1.59187954108888e-07!GO:0016563;transcription activator activity;1.60342068648537e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.07813913902045e-07!GO:0012501;programmed cell death;2.42907595433906e-07!GO:0006754;ATP biosynthetic process;2.77681736889934e-07!GO:0006753;nucleoside phosphate metabolic process;2.77681736889934e-07!GO:0005762;mitochondrial large ribosomal subunit;2.98869730726551e-07!GO:0000315;organellar large ribosomal subunit;2.98869730726551e-07!GO:0006915;apoptosis;3.73376089332214e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.77879158020183e-07!GO:0000151;ubiquitin ligase complex;4.90709301655674e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.10445489673167e-07!GO:0031497;chromatin assembly;5.1226722022488e-07!GO:0006334;nucleosome assembly;5.13478313161983e-07!GO:0003724;RNA helicase activity;5.65009657505583e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.68418991408686e-07!GO:0048475;coated membrane;5.9017813790774e-07!GO:0030117;membrane coat;5.9017813790774e-07!GO:0006752;group transfer coenzyme metabolic process;6.15248315626114e-07!GO:0016853;isomerase activity;6.39047645837325e-07!GO:0051170;nuclear import;7.61925599545255e-07!GO:0045259;proton-transporting ATP synthase complex;8.00570147919207e-07!GO:0003682;chromatin binding;8.09026688256671e-07!GO:0051427;hormone receptor binding;8.72420601818551e-07!GO:0044452;nucleolar part;9.5271954023901e-07!GO:0009892;negative regulation of metabolic process;9.76316438082667e-07!GO:0006606;protein import into nucleus;1.33843941127984e-06!GO:0003713;transcription coactivator activity;1.52668325576338e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.54427882687356e-06!GO:0009109;coenzyme catabolic process;1.54530641355767e-06!GO:0016363;nuclear matrix;1.56988610591945e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.17447118248792e-06!GO:0035257;nuclear hormone receptor binding;2.19548422994553e-06!GO:0006302;double-strand break repair;2.49175996188165e-06!GO:0051187;cofactor catabolic process;2.60628198323474e-06!GO:0016564;transcription repressor activity;2.61790956672119e-06!GO:0030120;vesicle coat;2.68053649357034e-06!GO:0030662;coated vesicle membrane;2.68053649357034e-06!GO:0044440;endosomal part;3.29421717448592e-06!GO:0010008;endosome membrane;3.29421717448592e-06!GO:0006793;phosphorus metabolic process;3.90900287944765e-06!GO:0006796;phosphate metabolic process;3.90900287944765e-06!GO:0051168;nuclear export;4.95833787490055e-06!GO:0008219;cell death;4.99667882358928e-06!GO:0016265;death;4.99667882358928e-06!GO:0000314;organellar small ribosomal subunit;4.99667882358928e-06!GO:0005763;mitochondrial small ribosomal subunit;4.99667882358928e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.99667882358928e-06!GO:0016859;cis-trans isomerase activity;5.07714475220249e-06!GO:0005874;microtubule;5.36402845887701e-06!GO:0006613;cotranslational protein targeting to membrane;6.03342991738553e-06!GO:0045786;negative regulation of progression through cell cycle;7.76166293276978e-06!GO:0006383;transcription from RNA polymerase III promoter;8.65118418466798e-06!GO:0000776;kinetochore;9.36266335762187e-06!GO:0003690;double-stranded DNA binding;9.94276148619507e-06!GO:0043021;ribonucleoprotein binding;1.10428711180293e-05!GO:0007017;microtubule-based process;1.1176021610847e-05!GO:0016481;negative regulation of transcription;1.12519990117659e-05!GO:0003702;RNA polymerase II transcription factor activity;1.17678193238769e-05!GO:0044431;Golgi apparatus part;1.44181369902539e-05!GO:0005770;late endosome;1.70758098219168e-05!GO:0046474;glycerophospholipid biosynthetic process;1.8112101662876e-05!GO:0030880;RNA polymerase complex;1.90552206730599e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.96957423416868e-05!GO:0003714;transcription corepressor activity;1.97275545653922e-05!GO:0003678;DNA helicase activity;1.99375953557785e-05!GO:0016741;transferase activity, transferring one-carbon groups;2.11307415356531e-05!GO:0046489;phosphoinositide biosynthetic process;2.31808437823515e-05!GO:0008168;methyltransferase activity;2.37098848669372e-05!GO:0005798;Golgi-associated vesicle;2.38197548496959e-05!GO:0007059;chromosome segregation;2.44887055169511e-05!GO:0003684;damaged DNA binding;2.47646798279658e-05!GO:0000059;protein import into nucleus, docking;2.5418566448626e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.63249295233366e-05!GO:0016310;phosphorylation;2.72667574895565e-05!GO:0008186;RNA-dependent ATPase activity;3.05886804625646e-05!GO:0009165;nucleotide biosynthetic process;3.11030376609501e-05!GO:0048523;negative regulation of cellular process;3.13257224435275e-05!GO:0005788;endoplasmic reticulum lumen;3.18815029475562e-05!GO:0048471;perinuclear region of cytoplasm;3.37858136958066e-05!GO:0006352;transcription initiation;3.39503735149708e-05!GO:0051052;regulation of DNA metabolic process;3.4803265518202e-05!GO:0007088;regulation of mitosis;3.66171982084271e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.68667482588476e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;4.33537105573222e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.87526195654389e-05!GO:0046467;membrane lipid biosynthetic process;5.47414022729675e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;5.5146353342724e-05!GO:0000428;DNA-directed RNA polymerase complex;5.5146353342724e-05!GO:0043681;protein import into mitochondrion;6.07011679308622e-05!GO:0005769;early endosome;6.88150910099701e-05!GO:0045454;cell redox homeostasis;7.82467666170599e-05!GO:0016787;hydrolase activity;8.04636115423471e-05!GO:0007093;mitotic cell cycle checkpoint;9.58280416553142e-05!GO:0006916;anti-apoptosis;9.60861495923914e-05!GO:0065007;biological regulation;9.95085681173671e-05!GO:0004004;ATP-dependent RNA helicase activity;0.000101669403900679!GO:0007052;mitotic spindle organization and biogenesis;0.000108354115258829!GO:0006310;DNA recombination;0.000113226081219914!GO:0006626;protein targeting to mitochondrion;0.000119095316470002!GO:0004527;exonuclease activity;0.000127609529016423!GO:0051246;regulation of protein metabolic process;0.000130559742923702!GO:0032508;DNA duplex unwinding;0.000133291191198131!GO:0032392;DNA geometric change;0.000133291191198131!GO:0006414;translational elongation;0.000151180350044227!GO:0006612;protein targeting to membrane;0.000169370306417222!GO:0004298;threonine endopeptidase activity;0.000186514830719926!GO:0030867;rough endoplasmic reticulum membrane;0.00019118652195367!GO:0006839;mitochondrial transport;0.000192466924599124!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000209572333409141!GO:0016251;general RNA polymerase II transcription factor activity;0.000230844103572208!GO:0004518;nuclease activity;0.000233963724055762!GO:0000139;Golgi membrane;0.000244911275096052!GO:0005048;signal sequence binding;0.000296215649634362!GO:0005684;U2-dependent spliceosome;0.000302909295507593!GO:0005525;GTP binding;0.000310483496968808!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000330741837272071!GO:0003924;GTPase activity;0.000362318390922356!GO:0043069;negative regulation of programmed cell death;0.000382069685081276!GO:0008250;oligosaccharyl transferase complex;0.000385116946578727!GO:0042981;regulation of apoptosis;0.000390928346128813!GO:0031988;membrane-bound vesicle;0.000391903814950865!GO:0031982;vesicle;0.000392641359217242!GO:0016023;cytoplasmic membrane-bound vesicle;0.000406155062646723!GO:0000082;G1/S transition of mitotic cell cycle;0.000409434046947973!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000412822180210664!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000417606517333194!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000420006585220505!GO:0003711;transcription elongation regulator activity;0.00042422320045162!GO:0015980;energy derivation by oxidation of organic compounds;0.000428634136781865!GO:0006268;DNA unwinding during replication;0.000439039807158306!GO:0008022;protein C-terminus binding;0.000444689504871149!GO:0043066;negative regulation of apoptosis;0.000466534896032402!GO:0008610;lipid biosynthetic process;0.000470435032206428!GO:0043067;regulation of programmed cell death;0.000477867753367363!GO:0051087;chaperone binding;0.000510967605726735!GO:0045892;negative regulation of transcription, DNA-dependent;0.000537537101614872!GO:0051920;peroxiredoxin activity;0.000538232771466153!GO:0031410;cytoplasmic vesicle;0.000560272259646867!GO:0031252;leading edge;0.000567446808978138!GO:0003729;mRNA binding;0.000570484759220208!GO:0006284;base-excision repair;0.00061167961277342!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000615243202488637!GO:0015399;primary active transmembrane transporter activity;0.000615243202488637!GO:0032259;methylation;0.000635160183528502!GO:0006506;GPI anchor biosynthetic process;0.000651237443989663!GO:0035258;steroid hormone receptor binding;0.000651237443989663!GO:0005637;nuclear inner membrane;0.000651237443989663!GO:0016491;oxidoreductase activity;0.000654346158439899!GO:0006497;protein amino acid lipidation;0.000654346158439899!GO:0016126;sterol biosynthetic process;0.000654346158439899!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000663330869926632!GO:0030118;clathrin coat;0.000663330869926632!GO:0009451;RNA modification;0.000674916561062508!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000712361233946751!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000712361233946751!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000712361233946751!GO:0006091;generation of precursor metabolites and energy;0.000732598907998715!GO:0000792;heterochromatin;0.00074181780618272!GO:0015631;tubulin binding;0.0007951390106674!GO:0009116;nucleoside metabolic process;0.000814683824557844!GO:0007010;cytoskeleton organization and biogenesis;0.000817017065729357!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000822184360221103!GO:0006730;one-carbon compound metabolic process;0.000848382260047071!GO:0030521;androgen receptor signaling pathway;0.000848382260047071!GO:0048500;signal recognition particle;0.00085227456609945!GO:0007006;mitochondrial membrane organization and biogenesis;0.000881640635142715!GO:0000228;nuclear chromosome;0.000890847460006178!GO:0048519;negative regulation of biological process;0.000893607464586954!GO:0004576;oligosaccharyl transferase activity;0.000931102928535524!GO:0006505;GPI anchor metabolic process;0.000941447748843824!GO:0006402;mRNA catabolic process;0.00102667796149863!GO:0000922;spindle pole;0.00105446967271251!GO:0043596;nuclear replication fork;0.00107381845468588!GO:0006405;RNA export from nucleus;0.00109759258519939!GO:0045893;positive regulation of transcription, DNA-dependent;0.00113366976649162!GO:0000049;tRNA binding;0.00118349715867043!GO:0018196;peptidyl-asparagine modification;0.00119073933143508!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00119073933143508!GO:0008312;7S RNA binding;0.00123418416025174!GO:0004674;protein serine/threonine kinase activity;0.00125103901005148!GO:0006270;DNA replication initiation;0.00125123418625202!GO:0005905;coated pit;0.00125273890212009!GO:0006144;purine base metabolic process;0.00129085728480488!GO:0008180;signalosome;0.00136224622909825!GO:0033116;ER-Golgi intermediate compartment membrane;0.00137419525323683!GO:0032561;guanyl ribonucleotide binding;0.00139028104260654!GO:0019001;guanyl nucleotide binding;0.00139028104260654!GO:0006401;RNA catabolic process;0.00139591969697336!GO:0006275;regulation of DNA replication;0.00141093916701577!GO:0005669;transcription factor TFIID complex;0.00142113267191827!GO:0030384;phosphoinositide metabolic process;0.00142840065828214!GO:0006289;nucleotide-excision repair;0.00144890046369185!GO:0005876;spindle microtubule;0.00153553810300966!GO:0006695;cholesterol biosynthetic process;0.0016691487382619!GO:0000819;sister chromatid segregation;0.0016691487382619!GO:0006650;glycerophospholipid metabolic process;0.001716763828798!GO:0000086;G2/M transition of mitotic cell cycle;0.00176278922085028!GO:0000096;sulfur amino acid metabolic process;0.00194514367110674!GO:0000786;nucleosome;0.00197466589515192!GO:0000070;mitotic sister chromatid segregation;0.00204433088184018!GO:0043414;biopolymer methylation;0.00210414148746869!GO:0045941;positive regulation of transcription;0.00219766254661998!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00219766254661998!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00219766254661998!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00228347940171846!GO:0019783;small conjugating protein-specific protease activity;0.00228575635031513!GO:0006400;tRNA modification;0.00239001329248698!GO:0006611;protein export from nucleus;0.002390532794088!GO:0031072;heat shock protein binding;0.00239121879469343!GO:0019899;enzyme binding;0.00247750198060274!GO:0004003;ATP-dependent DNA helicase activity;0.00251413320768356!GO:0043284;biopolymer biosynthetic process;0.00251684990489846!GO:0042158;lipoprotein biosynthetic process;0.00259285864176424!GO:0009112;nucleobase metabolic process;0.00262661131085156!GO:0032200;telomere organization and biogenesis;0.00263459477188562!GO:0000723;telomere maintenance;0.00263459477188562!GO:0006338;chromatin remodeling;0.0026417454930926!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0026417454930926!GO:0045047;protein targeting to ER;0.0026417454930926!GO:0005758;mitochondrial intermembrane space;0.00265085735515078!GO:0006891;intra-Golgi vesicle-mediated transport;0.00266707272558116!GO:0004843;ubiquitin-specific protease activity;0.00271124384875239!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00278284433696508!GO:0042393;histone binding;0.00288634198697798!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00290059279839239!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00308115616054797!GO:0016272;prefoldin complex;0.00323651372185105!GO:0051540;metal cluster binding;0.00323651372185105!GO:0051536;iron-sulfur cluster binding;0.00323651372185105!GO:0051053;negative regulation of DNA metabolic process;0.00337414822957231!GO:0042770;DNA damage response, signal transduction;0.00337683086191587!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00364093740994158!GO:0043601;nuclear replisome;0.00366336246854182!GO:0030894;replisome;0.00366336246854182!GO:0046483;heterocycle metabolic process;0.00370892743604691!GO:0030658;transport vesicle membrane;0.00371741820922615!GO:0030176;integral to endoplasmic reticulum membrane;0.00374365574155184!GO:0003746;translation elongation factor activity;0.00386065393675574!GO:0016790;thiolester hydrolase activity;0.0039765743577094!GO:0031968;organelle outer membrane;0.00404712578372684!GO:0019867;outer membrane;0.00412244520207308!GO:0007021;tubulin folding;0.00415223840075883!GO:0030133;transport vesicle;0.00418024085840742!GO:0015992;proton transport;0.00432567137087019!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00433450543859181!GO:0006818;hydrogen transport;0.00434332320648832!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00443494171564569!GO:0048487;beta-tubulin binding;0.00443619042727397!GO:0019843;rRNA binding;0.00452213552218225!GO:0050662;coenzyme binding;0.00456103481392142!GO:0004221;ubiquitin thiolesterase activity;0.00477525320637009!GO:0000725;recombinational repair;0.00477525320637009!GO:0000724;double-strand break repair via homologous recombination;0.00477525320637009!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00477525320637009!GO:0006595;polyamine metabolic process;0.00480236635404318!GO:0030027;lamellipodium;0.00494896031230306!GO:0046966;thyroid hormone receptor binding;0.00494896031230306!GO:0000178;exosome (RNase complex);0.00499462920308339!GO:0045045;secretory pathway;0.00503659176956841!GO:0000152;nuclear ubiquitin ligase complex;0.00503934076691515!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00521074866344374!GO:0051539;4 iron, 4 sulfur cluster binding;0.00530425406630587!GO:0008139;nuclear localization sequence binding;0.00539007841023945!GO:0005885;Arp2/3 protein complex;0.00550142149050011!GO:0030119;AP-type membrane coat adaptor complex;0.0055485009571913!GO:0022884;macromolecule transmembrane transporter activity;0.00569614983148615!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.00569614983148615!GO:0051789;response to protein stimulus;0.00572298340052282!GO:0006986;response to unfolded protein;0.00572298340052282!GO:0031970;organelle envelope lumen;0.00574911392418208!GO:0016407;acetyltransferase activity;0.00591051877117168!GO:0006220;pyrimidine nucleotide metabolic process;0.00591051877117168!GO:0031570;DNA integrity checkpoint;0.00596284352135943!GO:0005741;mitochondrial outer membrane;0.00598550947872296!GO:0005832;chaperonin-containing T-complex;0.00603375017124253!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00603375017124253!GO:0006520;amino acid metabolic process;0.00604764131338607!GO:0009303;rRNA transcription;0.00630621139414495!GO:0000209;protein polyubiquitination;0.00642967199037707!GO:0000287;magnesium ion binding;0.00668021268760011!GO:0000339;RNA cap binding;0.00693378563401327!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00713890853780294!GO:0030660;Golgi-associated vesicle membrane;0.00715247680907928!GO:0000910;cytokinesis;0.00717893948155008!GO:0008287;protein serine/threonine phosphatase complex;0.00742623180934347!GO:0030518;steroid hormone receptor signaling pathway;0.00743915010934605!GO:0008320;protein transmembrane transporter activity;0.00743915010934605!GO:0030131;clathrin adaptor complex;0.00749122774606298!GO:0051287;NAD binding;0.00758297175432962!GO:0040029;regulation of gene expression, epigenetic;0.00760321444826873!GO:0043022;ribosome binding;0.00776997635330585!GO:0005869;dynactin complex;0.00802858802807241!GO:0005791;rough endoplasmic reticulum;0.00805842883651287!GO:0006541;glutamine metabolic process;0.00809777666104492!GO:0000097;sulfur amino acid biosynthetic process;0.00809777666104492!GO:0008017;microtubule binding;0.00812786893507023!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00818798616849717!GO:0015002;heme-copper terminal oxidase activity;0.00818798616849717!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00818798616849717!GO:0004129;cytochrome-c oxidase activity;0.00818798616849717!GO:0030663;COPI coated vesicle membrane;0.00838324089956082!GO:0030126;COPI vesicle coat;0.00838324089956082!GO:0006376;mRNA splice site selection;0.00840204256299055!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00840204256299055!GO:0007050;cell cycle arrest;0.00848715049797338!GO:0030132;clathrin coat of coated pit;0.00869231096853719!GO:0031124;mRNA 3'-end processing;0.00940121652776719!GO:0000781;chromosome, telomeric region;0.00947329625215936!GO:0008408;3'-5' exonuclease activity;0.00959462459676086!GO:0004532;exoribonuclease activity;0.00962332272108745!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00962332272108745!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00965372180633448!GO:0006378;mRNA polyadenylation;0.00976648588257834!GO:0016408;C-acyltransferase activity;0.0099576053306753!GO:0016584;nucleosome positioning;0.0101202998978513!GO:0031577;spindle checkpoint;0.0101202998978513!GO:0031902;late endosome membrane;0.0102674363678819!GO:0000726;non-recombinational repair;0.010540022614931!GO:0008652;amino acid biosynthetic process;0.0106676088504587!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0107624973330077!GO:0051252;regulation of RNA metabolic process;0.0108490922294831!GO:0043492;ATPase activity, coupled to movement of substances;0.0110920006897485!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0114237426988029!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0114237426988029!GO:0008632;apoptotic program;0.0114237426988029!GO:0035267;NuA4 histone acetyltransferase complex;0.0115908623420486!GO:0006892;post-Golgi vesicle-mediated transport;0.0119226262133002!GO:0044454;nuclear chromosome part;0.0119426881514465!GO:0005773;vacuole;0.0120168250855476!GO:0050681;androgen receptor binding;0.0121567729744252!GO:0001824;blastocyst development;0.0121567729744252!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0121914661303518!GO:0046982;protein heterodimerization activity;0.0124175763672448!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0125693104826055!GO:0042802;identical protein binding;0.0129367800634173!GO:0043130;ubiquitin binding;0.0132567588305189!GO:0032182;small conjugating protein binding;0.0132567588305189!GO:0000790;nuclear chromatin;0.0132753473482606!GO:0009124;nucleoside monophosphate biosynthetic process;0.0132753473482606!GO:0009123;nucleoside monophosphate metabolic process;0.0132753473482606!GO:0031901;early endosome membrane;0.013493663415205!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0135153952027324!GO:0044450;microtubule organizing center part;0.0136092340789085!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0136357309823058!GO:0007004;telomere maintenance via telomerase;0.0138247525314797!GO:0030137;COPI-coated vesicle;0.0139816624996211!GO:0019752;carboxylic acid metabolic process;0.0140026213236769!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0141798592167876!GO:0055083;monovalent inorganic anion homeostasis;0.0141798592167876!GO:0055064;chloride ion homeostasis;0.0141798592167876!GO:0030644;cellular chloride ion homeostasis;0.0141798592167876!GO:0006082;organic acid metabolic process;0.0147828129041164!GO:0005875;microtubule associated complex;0.0148006701649336!GO:0008156;negative regulation of DNA replication;0.0149092961033298!GO:0030125;clathrin vesicle coat;0.0150193364113463!GO:0030665;clathrin coated vesicle membrane;0.0150193364113463!GO:0006672;ceramide metabolic process;0.0155332498038838!GO:0003923;GPI-anchor transamidase activity;0.0157186416746179!GO:0016255;attachment of GPI anchor to protein;0.0157186416746179!GO:0042765;GPI-anchor transamidase complex;0.0157186416746179!GO:0004523;ribonuclease H activity;0.0159741631423292!GO:0005732;small nucleolar ribonucleoprotein complex;0.0161312069192976!GO:0005663;DNA replication factor C complex;0.0163871609127767!GO:0043189;H4/H2A histone acetyltransferase complex;0.01641612668389!GO:0000123;histone acetyltransferase complex;0.0164276796907545!GO:0005680;anaphase-promoting complex;0.0164776525999524!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0166626802035926!GO:0008097;5S rRNA binding;0.0169664856140922!GO:0030433;ER-associated protein catabolic process;0.0169664856140922!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0169664856140922!GO:0030134;ER to Golgi transport vesicle;0.0170969264227468!GO:0047485;protein N-terminus binding;0.0171107098658839!GO:0030145;manganese ion binding;0.017149151176342!GO:0043624;cellular protein complex disassembly;0.0178071924641591!GO:0005666;DNA-directed RNA polymerase III complex;0.0179777375467591!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0180700728577017!GO:0044262;cellular carbohydrate metabolic process;0.018177564311961!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0185131133427628!GO:0006740;NADPH regeneration;0.0185652417325855!GO:0006098;pentose-phosphate shunt;0.0185652417325855!GO:0008270;zinc ion binding;0.0188635405287255!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0194156910121281!GO:0046519;sphingoid metabolic process;0.0199279452585326!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0200685093467144!GO:0006643;membrane lipid metabolic process;0.0202762129194218!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.020364591694874!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0206068360508543!GO:0045039;protein import into mitochondrial inner membrane;0.0206068360508543!GO:0051656;establishment of organelle localization;0.0209098102218266!GO:0008213;protein amino acid alkylation;0.0209829283078621!GO:0006479;protein amino acid methylation;0.0209829283078621!GO:0006607;NLS-bearing substrate import into nucleus;0.0213184766700837!GO:0015036;disulfide oxidoreductase activity;0.0213184766700837!GO:0042026;protein refolding;0.0214004620446373!GO:0005658;alpha DNA polymerase:primase complex;0.021568537516788!GO:0001522;pseudouridine synthesis;0.0218408173735044!GO:0048037;cofactor binding;0.0221881085614597!GO:0007034;vacuolar transport;0.023241705646771!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0233515257167655!GO:0010257;NADH dehydrogenase complex assembly;0.0233515257167655!GO:0033108;mitochondrial respiratory chain complex assembly;0.0233515257167655!GO:0031371;ubiquitin conjugating enzyme complex;0.0234265766511038!GO:0006007;glucose catabolic process;0.0235507392619053!GO:0030496;midbody;0.0238759705638954!GO:0000387;spliceosomal snRNP biogenesis;0.0247622612133389!GO:0042769;DNA damage response, detection of DNA damage;0.0248515179106575!GO:0007346;regulation of progression through mitotic cell cycle;0.0249790670290651!GO:0017056;structural constituent of nuclear pore;0.0251856917500283!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0254359702018101!GO:0050178;phenylpyruvate tautomerase activity;0.0257484396141423!GO:0043433;negative regulation of transcription factor activity;0.02586579467715!GO:0000077;DNA damage checkpoint;0.0262481849724559!GO:0030508;thiol-disulfide exchange intermediate activity;0.0266360998903731!GO:0009066;aspartate family amino acid metabolic process;0.0269217773590279!GO:0022890;inorganic cation transmembrane transporter activity;0.0270235068732055!GO:0005652;nuclear lamina;0.0271655704784939!GO:0008637;apoptotic mitochondrial changes;0.0277829762824221!GO:0008536;Ran GTPase binding;0.0284039938287371!GO:0032984;macromolecular complex disassembly;0.0288460407555616!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0289689851483955!GO:0009161;ribonucleoside monophosphate metabolic process;0.0289689851483955!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0289689851483955!GO:0008538;proteasome activator activity;0.0289689851483955!GO:0000119;mediator complex;0.0292979794915584!GO:0030911;TPR domain binding;0.0298092721308267!GO:0046128;purine ribonucleoside metabolic process;0.0298360802429501!GO:0042278;purine nucleoside metabolic process;0.0298360802429501!GO:0031625;ubiquitin protein ligase binding;0.0300698746728648!GO:0003887;DNA-directed DNA polymerase activity;0.0300732013564098!GO:0009067;aspartate family amino acid biosynthetic process;0.0302514475218922!GO:0000323;lytic vacuole;0.0303450724533346!GO:0005764;lysosome;0.0303450724533346!GO:0030659;cytoplasmic vesicle membrane;0.030657558453722!GO:0008276;protein methyltransferase activity;0.0311775133489616!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0312482629722376!GO:0046914;transition metal ion binding;0.0312482629722376!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0313569879143353!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0315977459599175!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0315977459599175!GO:0006278;RNA-dependent DNA replication;0.0316243608522623!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0316243608522623!GO:0031123;RNA 3'-end processing;0.03261627247628!GO:0030140;trans-Golgi network transport vesicle;0.0341996022970383!GO:0009396;folic acid and derivative biosynthetic process;0.0348180550694916!GO:0005784;translocon complex;0.0351425583919711!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0353156645393184!GO:0006509;membrane protein ectodomain proteolysis;0.035420148716309!GO:0033619;membrane protein proteolysis;0.035420148716309!GO:0006733;oxidoreduction coenzyme metabolic process;0.0354661127445851!GO:0006519;amino acid and derivative metabolic process;0.0356742511003494!GO:0030127;COPII vesicle coat;0.0360731344603698!GO:0012507;ER to Golgi transport vesicle membrane;0.0360731344603698!GO:0005881;cytoplasmic microtubule;0.0362075988072932!GO:0005938;cell cortex;0.0363206745264372!GO:0065009;regulation of a molecular function;0.0371822628287674!GO:0030522;intracellular receptor-mediated signaling pathway;0.0373585349828318!GO:0032039;integrator complex;0.0374776685673747!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0376022976069089!GO:0042809;vitamin D receptor binding;0.0380868664468002!GO:0032153;cell division site;0.0384244925714505!GO:0032155;cell division site part;0.0384244925714505!GO:0001832;blastocyst growth;0.0388915335319478!GO:0031503;protein complex localization;0.0392056939091701!GO:0008234;cysteine-type peptidase activity;0.0392056939091701!GO:0005844;polysome;0.0393311307398195!GO:0044438;microbody part;0.0394377308827689!GO:0044439;peroxisomal part;0.0394377308827689!GO:0042791;5S class rRNA transcription;0.0402047344407634!GO:0000127;transcription factor TFIIIC complex;0.0402047344407634!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0402047344407634!GO:0005720;nuclear heterochromatin;0.0411146924937968!GO:0048522;positive regulation of cellular process;0.0413647933935481!GO:0016417;S-acyltransferase activity;0.0414535554595048!GO:0000805;X chromosome;0.0414535554595048!GO:0001740;Barr body;0.0414535554595048!GO:0046983;protein dimerization activity;0.0418728555852136!GO:0009113;purine base biosynthetic process;0.0421362616157552!GO:0031529;ruffle organization and biogenesis;0.042338443056556!GO:0043631;RNA polyadenylation;0.042338443056556!GO:0022406;membrane docking;0.042338443056556!GO:0048278;vesicle docking;0.042338443056556!GO:0004448;isocitrate dehydrogenase activity;0.0424142026005756!GO:0006644;phospholipid metabolic process;0.0424904581229711!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0430407467030826!GO:0016569;covalent chromatin modification;0.0438698251195379!GO:0006301;postreplication repair;0.0439006965413774!GO:0051098;regulation of binding;0.0439285831266553!GO:0004185;serine carboxypeptidase activity;0.0440960971211038!GO:0051320;S phase;0.044252868877503!GO:0022411;cellular component disassembly;0.0444458244503357!GO:0006406;mRNA export from nucleus;0.0447377384819685!GO:0000930;gamma-tubulin complex;0.0447377384819685!GO:0043241;protein complex disassembly;0.0448551233417823!GO:0000175;3'-5'-exoribonuclease activity;0.044870421817047!GO:0006661;phosphatidylinositol biosynthetic process;0.0461708541134967!GO:0033673;negative regulation of kinase activity;0.046356256076964!GO:0006469;negative regulation of protein kinase activity;0.046356256076964!GO:0009304;tRNA transcription;0.0464813178639573!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0472158755275669!GO:0016301;kinase activity;0.047290022873256!GO:0043043;peptide biosynthetic process;0.0477742562384319!GO:0004680;casein kinase activity;0.048386438222651!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0484957523901466!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0485676805330247!GO:0006739;NADP metabolic process;0.0485804634138886!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.0485804634138886!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.0485804634138886!GO:0045267;proton-transporting ATP synthase, catalytic core;0.0485804634138886!GO:0030515;snoRNA binding;0.0485974725182329!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0490634771569888!GO:0008601;protein phosphatase type 2A regulator activity;0.0493988889957422!GO:0006984;ER-nuclear signaling pathway;0.0496180738030916
|sample_id=10450
|sample_id=10450
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=kidney
|sample_tissue=kidney
|top_motifs=NFY{A,B,C}:2.1422752617;ELK1,4_GABP{A,B1}:2.07548768772;PBX1:1.98441211122;ZNF143:1.89685421509;NRF1:1.7949280853;E2F1..5:1.79473676367;YY1:1.65408128404;STAT1,3:1.42955822231;TFDP1:1.34163519796;BREu{core}:1.32017998609;T:1.25495466155;HOX{A6,A7,B6,B7}:1.22943163287;POU1F1:1.21173581083;NKX2-1,4:1.1557700143;GFI1:1.14672320441;NANOG:1.13479338708;ONECUT1,2:1.11312766564;HOX{A5,B5}:1.07073223799;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02334985177;IKZF1:1.01629735213;RBPJ:1.00668628399;PRRX1,2:0.96820274344;EN1,2:0.949445147226;NKX2-3_NKX2-5:0.892374160939;PITX1..3:0.887306116012;FOX{I1,J2}:0.8481596504;HOXA9_MEIS1:0.840336991577;ATF4:0.78319181678;MYB:0.780695807354;TEF:0.71443346952;CDC5L:0.708047879547;CDX1,2,4:0.701537617144;ZEB1:0.677559507709;CRX:0.650051429422;bHLH_family:0.644731759113;SOX{8,9,10}:0.607695146438;STAT5{A,B}:0.606936304961;FOXQ1:0.590482366705;NFIX:0.587659814707;LHX3,4:0.564744177264;NR5A1,2:0.535090222853;GFI1B:0.534980202718;HOX{A4,D4}:0.519277518344;FOXP1:0.47764545225;PDX1:0.466983915074;GZF1:0.460527753046;EVI1:0.445885589912;LEF1_TCF7_TCF7L1,2:0.435124623378;SOX17:0.431012859752;ADNP_IRX_SIX_ZHX:0.423046646222;VSX1,2:0.417063847381;SNAI1..3:0.413356298706;POU6F1:0.411554623706;FOXM1:0.387778287199;RFX1:0.386350493546;FOXA2:0.382574921047;HBP1_HMGB_SSRP1_UBTF:0.375580673773;ZNF384:0.337978354959;FOXD3:0.312520429027;NKX6-1,2:0.302652451906;OCT4_SOX2{dimer}:0.241374676943;ZNF148:0.221307993658;XCPE1{core}:0.215316763891;FOX{F1,F2,J1}:0.208173373759;RORA:0.192086385185;PAX6:0.188930067558;RFX2..5_RFXANK_RFXAP:0.187682733161;PAX8:0.149698124727;LMO2:0.147968720044;CUX2:0.1381195863;NFE2L1:0.130336654627;AHR_ARNT_ARNT2:0.119681975643;DBP:0.1101448676;HIC1:0.105076133688;POU5F1:0.056293032914;AIRE:0.05348378341;HSF1,2:0.0494760043247;TP53:0.04943935151;HNF1A:0.0467188152955;HNF4A_NR2F1,2:0.043736786761;PAX4:0.0434819468517;ZFP161:0.0410109775281;SP1:0.0349953703024;MZF1:-0.00688494351797;ATF2:-0.0186985592431;POU3F1..4:-0.0228709955141;GATA6:-0.0311391210857;GTF2A1,2:-0.0521131964004;ALX1:-0.0643757601977;TFAP2B:-0.0750119090893;REST:-0.0832321755229;ATF5_CREB3:-0.0980918040683;NR6A1:-0.098384124837;ELF1,2,4:-0.101502698468;PAX5:-0.11978431154;SOX5:-0.125529308958;JUN:-0.151178856561;NKX2-2,8:-0.157242106053;MED-1{core}:-0.158281247199;SREBF1,2:-0.171380243071;MYBL2:-0.186675424652;SOX2:-0.196852093787;PAX1,9:-0.20298492059;PAX2:-0.209631555324;MEF2{A,B,C,D}:-0.210800260776;PPARG:-0.216065552001;HAND1,2:-0.228972560545;FOXL1:-0.250369378537;FOXO1,3,4:-0.252602890359;POU2F1..3:-0.255695409856;ZBTB16:-0.257875016313;TGIF1:-0.261368341225;NFE2L2:-0.267848125954;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.279091299895;MYOD1:-0.288808966252;IKZF2:-0.288856113062;EGR1..3:-0.29095224366;ARID5B:-0.320792939822;FOS_FOS{B,L1}_JUN{B,D}:-0.322338970544;TBX4,5:-0.326273980971;TBP:-0.329200327278;UFEwm:-0.338952628222;PAX3,7:-0.342677084907;GATA4:-0.342845698499;TOPORS:-0.344471004022;XBP1:-0.349637588293;BACH2:-0.367578918805;NHLH1,2:-0.373202097255;HIF1A:-0.403649579598;HES1:-0.407580877666;GTF2I:-0.407822189882;PATZ1:-0.411640053049;NFE2:-0.415407521715;NANOG{mouse}:-0.429297006309;ZIC1..3:-0.436929701588;FOXP3:-0.43783287425;TLX1..3_NFIC{dimer}:-0.445356813517;GCM1,2:-0.454940907705;HLF:-0.457350986221;ESR1:-0.466484233565;SPI1:-0.477379258114;NFKB1_REL_RELA:-0.479756917536;PRDM1:-0.494225305314;SPIB:-0.522686048488;NKX3-2:-0.533013114794;NR1H4:-0.53356085075;FOXN1:-0.539276853522;ZBTB6:-0.544206785817;AR:-0.544367740046;RXR{A,B,G}:-0.552763241877;ATF6:-0.55970953969;FOSL2:-0.565931806593;KLF4:-0.581236876045;CREB1:-0.583108240225;NR3C1:-0.590320820565;MYFfamily:-0.595325116285;BPTF:-0.60433489642;FOX{D1,D2}:-0.612434112039;DMAP1_NCOR{1,2}_SMARC:-0.656067810127;RUNX1..3:-0.65790719977;MAZ:-0.669738076228;MTE{core}:-0.686396950027;EBF1:-0.715796324586;NFIL3:-0.723623300353;TEAD1:-0.734159964138;NKX3-1:-0.755919363799;MTF1:-0.799645741431;RREB1:-0.813692053823;IRF7:-0.81565908615;ESRRA:-0.818515210875;ETS1,2:-0.863651484685;ZNF238:-0.903144815885;TFAP2{A,C}:-0.919264108121;CEBPA,B_DDIT3:-0.951371311393;EP300:-1.0097062061;ZNF423:-1.04690316977;MAFB:-1.06920503908;ALX4:-1.15549282829;SPZ1:-1.18959083403;TAL1_TCF{3,4,12}:-1.19783252451;SRF:-1.21819207021;TFCP2:-1.29792062678;IRF1,2:-1.32336345931;STAT2,4,6:-1.33790783467;NFATC1..3:-1.37026201996;GLI1..3:-1.39155921003;SMAD1..7,9:-1.39927413391;TFAP4:-1.41870886979;HMGA1,2:-1.62513959152;HMX1:-1.62660487255;TLX2:-1.66748177089;RXRA_VDR{dimer}:-1.9273946171
|top_motifs=NFY{A,B,C}:2.1422752617;ELK1,4_GABP{A,B1}:2.07548768772;PBX1:1.98441211122;ZNF143:1.89685421509;NRF1:1.7949280853;E2F1..5:1.79473676367;YY1:1.65408128404;STAT1,3:1.42955822231;TFDP1:1.34163519796;BREu{core}:1.32017998609;T:1.25495466155;HOX{A6,A7,B6,B7}:1.22943163287;POU1F1:1.21173581083;NKX2-1,4:1.1557700143;GFI1:1.14672320441;NANOG:1.13479338708;ONECUT1,2:1.11312766564;HOX{A5,B5}:1.07073223799;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02334985177;IKZF1:1.01629735213;RBPJ:1.00668628399;PRRX1,2:0.96820274344;EN1,2:0.949445147226;NKX2-3_NKX2-5:0.892374160939;PITX1..3:0.887306116012;FOX{I1,J2}:0.8481596504;HOXA9_MEIS1:0.840336991577;ATF4:0.78319181678;MYB:0.780695807354;TEF:0.71443346952;CDC5L:0.708047879547;CDX1,2,4:0.701537617144;ZEB1:0.677559507709;CRX:0.650051429422;bHLH_family:0.644731759113;SOX{8,9,10}:0.607695146438;STAT5{A,B}:0.606936304961;FOXQ1:0.590482366705;NFIX:0.587659814707;LHX3,4:0.564744177264;NR5A1,2:0.535090222853;GFI1B:0.534980202718;HOX{A4,D4}:0.519277518344;FOXP1:0.47764545225;PDX1:0.466983915074;GZF1:0.460527753046;EVI1:0.445885589912;LEF1_TCF7_TCF7L1,2:0.435124623378;SOX17:0.431012859752;ADNP_IRX_SIX_ZHX:0.423046646222;VSX1,2:0.417063847381;SNAI1..3:0.413356298706;POU6F1:0.411554623706;FOXM1:0.387778287199;RFX1:0.386350493546;FOXA2:0.382574921047;HBP1_HMGB_SSRP1_UBTF:0.375580673773;ZNF384:0.337978354959;FOXD3:0.312520429027;NKX6-1,2:0.302652451906;OCT4_SOX2{dimer}:0.241374676943;ZNF148:0.221307993658;XCPE1{core}:0.215316763891;FOX{F1,F2,J1}:0.208173373759;RORA:0.192086385185;PAX6:0.188930067558;RFX2..5_RFXANK_RFXAP:0.187682733161;PAX8:0.149698124727;LMO2:0.147968720044;CUX2:0.1381195863;NFE2L1:0.130336654627;AHR_ARNT_ARNT2:0.119681975643;DBP:0.1101448676;HIC1:0.105076133688;POU5F1:0.056293032914;AIRE:0.05348378341;HSF1,2:0.0494760043247;TP53:0.04943935151;HNF1A:0.0467188152955;HNF4A_NR2F1,2:0.043736786761;PAX4:0.0434819468517;ZFP161:0.0410109775281;SP1:0.0349953703024;MZF1:-0.00688494351797;ATF2:-0.0186985592431;POU3F1..4:-0.0228709955141;GATA6:-0.0311391210857;GTF2A1,2:-0.0521131964004;ALX1:-0.0643757601977;TFAP2B:-0.0750119090893;REST:-0.0832321755229;ATF5_CREB3:-0.0980918040683;NR6A1:-0.098384124837;ELF1,2,4:-0.101502698468;PAX5:-0.11978431154;SOX5:-0.125529308958;JUN:-0.151178856561;NKX2-2,8:-0.157242106053;MED-1{core}:-0.158281247199;SREBF1,2:-0.171380243071;MYBL2:-0.186675424652;SOX2:-0.196852093787;PAX1,9:-0.20298492059;PAX2:-0.209631555324;MEF2{A,B,C,D}:-0.210800260776;PPARG:-0.216065552001;HAND1,2:-0.228972560545;FOXL1:-0.250369378537;FOXO1,3,4:-0.252602890359;POU2F1..3:-0.255695409856;ZBTB16:-0.257875016313;TGIF1:-0.261368341225;NFE2L2:-0.267848125954;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.279091299895;MYOD1:-0.288808966252;IKZF2:-0.288856113062;EGR1..3:-0.29095224366;ARID5B:-0.320792939822;FOS_FOS{B,L1}_JUN{B,D}:-0.322338970544;TBX4,5:-0.326273980971;TBP:-0.329200327278;UFEwm:-0.338952628222;PAX3,7:-0.342677084907;GATA4:-0.342845698499;TOPORS:-0.344471004022;XBP1:-0.349637588293;BACH2:-0.367578918805;NHLH1,2:-0.373202097255;HIF1A:-0.403649579598;HES1:-0.407580877666;GTF2I:-0.407822189882;PATZ1:-0.411640053049;NFE2:-0.415407521715;NANOG{mouse}:-0.429297006309;ZIC1..3:-0.436929701588;FOXP3:-0.43783287425;TLX1..3_NFIC{dimer}:-0.445356813517;GCM1,2:-0.454940907705;HLF:-0.457350986221;ESR1:-0.466484233565;SPI1:-0.477379258114;NFKB1_REL_RELA:-0.479756917536;PRDM1:-0.494225305314;SPIB:-0.522686048488;NKX3-2:-0.533013114794;NR1H4:-0.53356085075;FOXN1:-0.539276853522;ZBTB6:-0.544206785817;AR:-0.544367740046;RXR{A,B,G}:-0.552763241877;ATF6:-0.55970953969;FOSL2:-0.565931806593;KLF4:-0.581236876045;CREB1:-0.583108240225;NR3C1:-0.590320820565;MYFfamily:-0.595325116285;BPTF:-0.60433489642;FOX{D1,D2}:-0.612434112039;DMAP1_NCOR{1,2}_SMARC:-0.656067810127;RUNX1..3:-0.65790719977;MAZ:-0.669738076228;MTE{core}:-0.686396950027;EBF1:-0.715796324586;NFIL3:-0.723623300353;TEAD1:-0.734159964138;NKX3-1:-0.755919363799;MTF1:-0.799645741431;RREB1:-0.813692053823;IRF7:-0.81565908615;ESRRA:-0.818515210875;ETS1,2:-0.863651484685;ZNF238:-0.903144815885;TFAP2{A,C}:-0.919264108121;CEBPA,B_DDIT3:-0.951371311393;EP300:-1.0097062061;ZNF423:-1.04690316977;MAFB:-1.06920503908;ALX4:-1.15549282829;SPZ1:-1.18959083403;TAL1_TCF{3,4,12}:-1.19783252451;SRF:-1.21819207021;TFCP2:-1.29792062678;IRF1,2:-1.32336345931;STAT2,4,6:-1.33790783467;NFATC1..3:-1.37026201996;GLI1..3:-1.39155921003;SMAD1..7,9:-1.39927413391;TFAP4:-1.41870886979;HMGA1,2:-1.62513959152;HMX1:-1.62660487255;TLX2:-1.66748177089;RXRA_VDR{dimer}:-1.9273946171
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10450-106F9;search_select_hide=table117:FF:10450-106F9
}}
}}

Latest revision as of 14:03, 3 June 2020

Name:embryonic kidney cell line: HEK293/SLAM untreated
Species:Human (Homo sapiens)
Library ID:CNhs11046
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeunclassifiable
cell lineHEK293/SLAM
companyNA
collaborationChieko Kai (University of Tokyo)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004732
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11046 CAGE DRX007871 DRR008743
Accession ID Hg19

Library idBAMCTSS
CNhs11046 DRZ000168 DRZ001553
Accession ID Hg38

Library idBAMCTSS
CNhs11046 DRZ011518 DRZ012903
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
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C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11046

Jaspar motifP-value
MA0002.28.80609e-4
MA0003.10.142
MA0004.10.511
MA0006.10.528
MA0007.10.547
MA0009.10.723
MA0014.10.519
MA0017.10.0289
MA0018.20.0948
MA0019.10.198
MA0024.19.30818e-7
MA0025.10.287
MA0027.10.683
MA0028.18.57692e-5
MA0029.10.0783
MA0030.10.663
MA0031.10.762
MA0035.20.0436
MA0038.10.00286
MA0039.20.429
MA0040.10.206
MA0041.10.471
MA0042.10.348
MA0043.10.0376
MA0046.10.759
MA0047.20.511
MA0048.10.367
MA0050.11.98326e-9
MA0051.12.79814e-4
MA0052.10.0272
MA0055.10.0739
MA0057.10.353
MA0058.10.357
MA0059.10.478
MA0060.12.08438e-26
MA0061.10.00829
MA0062.21.24569e-5
MA0065.20.0822
MA0066.10.119
MA0067.10.56
MA0068.10.0293
MA0069.10.44
MA0070.10.0242
MA0071.10.842
MA0072.10.0644
MA0073.10.54
MA0074.10.515
MA0076.11.92399e-6
MA0077.10.563
MA0078.10.297
MA0079.20.557
MA0080.21.89772e-9
MA0081.10.229
MA0083.10.0178
MA0084.10.211
MA0087.10.745
MA0088.10.0406
MA0090.10.0122
MA0091.10.00597
MA0092.10.0771
MA0093.10.357
MA0099.22.11164e-7
MA0100.10.307
MA0101.10.203
MA0102.20.00368
MA0103.10.576
MA0104.20.108
MA0105.10.00136
MA0106.10.701
MA0107.10.0378
MA0108.20.25
MA0111.10.625
MA0112.23.09033e-5
MA0113.10.159
MA0114.10.313
MA0115.10.645
MA0116.10.0127
MA0117.10.789
MA0119.10.112
MA0122.10.496
MA0124.10.53
MA0125.10.107
MA0131.10.282
MA0135.10.716
MA0136.10.00361
MA0137.20.801
MA0138.20.064
MA0139.10.819
MA0140.10.0616
MA0141.10.293
MA0142.10.464
MA0143.10.284
MA0144.10.0308
MA0145.10.0688
MA0146.10.128
MA0147.10.19
MA0148.10.32
MA0149.10.726
MA0150.10.00344
MA0152.10.393
MA0153.10.604
MA0154.10.0141
MA0155.10.124
MA0156.10.591
MA0157.10.917
MA0159.10.0496
MA0160.10.321
MA0162.10.159
MA0163.10.0125
MA0164.10.873
MA0258.10.00224
MA0259.10.268



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11046

Novel motifP-value
10.22
100.528
1000.41
1010.717
1020.818
1030.167
1040.688
1050.406
1062.11687e-4
1070.0294
1080.653
1090.211
110.156
1100.383
1110.747
1120.0173
1130.17
1140.0202
1150.972
1160.674
1170.567
1180.482
1190.0995
120.852
1200.953
1210.918
1220.506
1230.285
1240.478
1250.7
1260.56
1270.239
1280.0213
1290.611
130.854
1300.0541
1310.263
1320.52
1330.267
1340.628
1356.3029e-4
1360.159
1370.157
1380.237
1390.0415
140.577
1400.293
1410.529
1420.769
1430.339
1440.409
1450.344
1460.851
1470.191
1480.25
1490.0165
150.275
1500.472
1510.186
1520.0222
1530.379
1540.556
1550.957
1560.816
1570.444
1580.445
1590.637
160.291
1600.467
1610.779
1620.769
1630.313
1640.104
1650.787
1660.49
1670.322
1680.0605
1690.00668
170.107
180.0956
190.0769
20.171
200.381
210.456
220.102
230.00131
240.94
250.873
260.415
270.0789
280.981
290.648
30.175
300.523
310.544
320.00603
330.874
340.268
350.522
360.875
370.151
380.349
390.523
40.157
400.83
410.391
420.741
430.127
440.451
450.403
460.1
470.512
480.457
490.373
50.278
500.645
510.23
520.143
530.403
540.231
550.0637
560.659
570.362
580.274
590.077
60.89
600.0194
610.838
620.0936
630.173
640.601
650.0345
668.32558e-4
670.77
680.726
690.696
70.797
700.00719
710.302
720.198
730.081
740.811
750.417
760.854
770.142
780.823
790.0694
80.37
800.0528
810.414
820.0127
830.118
840.702
850.00188
860.442
870.469
880.56
890.0783
90.077
900.485
910.0399
920.0246
930.501
940.012
950.511
960.083
971
980.237
990.73



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11046


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0102733 (embryonic kidney cell line sample)
0100669 (embryonic cell line sample)
0100007 (HEK-293 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

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