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(Created page with "{{f5samples |id=FF:12641-134G4 |name=Melanocyte, donor1 (MC+1) |sample_id=12641 |rna_tube_id= |rna_box=134 |rna_position=G4 |sample_cell_lot= |sample_cell_catalog= |s...")
 
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{{f5samples
{{f5samples
|id=FF:12641-134G4
|DRA_sample_Accession=CAGE@SAMD00005797
|name=Melanocyte, donor1 (MC+1)
|accession_numbers=CAGE;DRX008594;DRR009466;DRZ000891;DRZ002276;DRZ012241;DRZ013626
|sample_id=12641
|rna_tube_id=
|rna_box=134
|rna_position=G4
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=skin
|sample_donor(cell lot)=rep1
|sample_sex=male
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=melanocyte
|sample_cell_line=
|sample_collaboration=Susan Zabierowski (Wistar Institute)
|sample_experimental_condition=Human ES cell differentiation to melanocyte
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=7.00000
|rna_concentration=0.83800
|sample_note=
|profile_hcage=CNhs12816,LSID972,release012,MAPPING
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000055,CL:0000063,CL:0000066,CL:0000075,CL:0000133,CL:0000144,CL:0000147,CL:0000148,CL:0000219,CL:0000220,CL:0000221,CL:0000255,CL:0000325,CL:0000333,CL:0000541,CL:0000548,CL:0000710,CL:0002077,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0000730
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=FF:0000343,FF:0000730,FF:12641-134G4
|fonse_treatment=FF:0000343,FF:0000730,FF:12641-134G4
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12641-134G4
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12641-134G4
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor1%2520%2528MC%252b1%2529.CNhs12816.12641-134G4.hg38.nobarcode.ctss.bed.gz
|id=FF:12641-134G4
|is_a=EFO:0002091;;FF:0000730
|is_obsolete=
|library_id=CNhs12816
|library_id_phase_based=2:CNhs12816
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12641
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12641
|name=Melanocyte, donor1 (MC+1)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12816,LSID972,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=134
|rna_catalog_number=
|rna_concentration=0.84
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=G4
|rna_rin=
|rna_sample_type=
|rna_tube_id=134G4
|rna_weight_ug=7
|sample_age=
|sample_category=time courses
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=melanocyte
|sample_collaboration=Susan Zabierowski (Wistar Institute)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=rep1
|sample_ethnicity=
|sample_experimental_condition=Human ES cell differentiation to melanocyte
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.27964153963952e-264!GO:0043231;intracellular membrane-bound organelle;1.23766933857932e-224!GO:0043227;membrane-bound organelle;1.42797339480612e-224!GO:0043226;organelle;3.04337555956e-219!GO:0043229;intracellular organelle;7.78612443813852e-219!GO:0005737;cytoplasm;2.11931865600691e-204!GO:0044422;organelle part;1.88058375977293e-164!GO:0044446;intracellular organelle part;7.44126041333819e-163!GO:0044444;cytoplasmic part;1.47692604170209e-154!GO:0032991;macromolecular complex;5.37671167247125e-105!GO:0044237;cellular metabolic process;1.85823274065301e-98!GO:0044238;primary metabolic process;4.30216654366012e-97!GO:0030529;ribonucleoprotein complex;2.24211380331382e-92!GO:0043170;macromolecule metabolic process;2.77170430037233e-86!GO:0005634;nucleus;7.07716012685942e-84!GO:0044428;nuclear part;7.62263776522381e-79!GO:0005739;mitochondrion;2.89817430588423e-78!GO:0043233;organelle lumen;4.93282203117257e-78!GO:0031974;membrane-enclosed lumen;4.93282203117257e-78!GO:0003723;RNA binding;5.09644004379551e-71!GO:0005515;protein binding;3.25075170255374e-68!GO:0031090;organelle membrane;9.82892408503373e-63!GO:0005840;ribosome;1.91179067023629e-55!GO:0006396;RNA processing;1.79347698257856e-53!GO:0044429;mitochondrial part;1.16462837891508e-52!GO:0043234;protein complex;2.58823082884926e-52!GO:0006412;translation;4.24210883395943e-51!GO:0043283;biopolymer metabolic process;1.58928009736932e-50!GO:0016043;cellular component organization and biogenesis;1.77069566296101e-49!GO:0009058;biosynthetic process;7.72665116034735e-49!GO:0031967;organelle envelope;1.98983403706879e-48!GO:0031975;envelope;5.67924607073958e-48!GO:0003735;structural constituent of ribosome;7.9171472447001e-48!GO:0033036;macromolecule localization;2.09790038182654e-47!GO:0015031;protein transport;2.69572915624145e-47!GO:0019538;protein metabolic process;1.16499634936919e-45!GO:0031981;nuclear lumen;7.39244361040585e-45!GO:0008104;protein localization;6.07942792322133e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.28429101926254e-44!GO:0045184;establishment of protein localization;2.69516280993197e-43!GO:0044249;cellular biosynthetic process;2.76285228543149e-43!GO:0009059;macromolecule biosynthetic process;7.09729407550851e-43!GO:0033279;ribosomal subunit;2.76461740505144e-41!GO:0044260;cellular macromolecule metabolic process;3.45149879601842e-41!GO:0044267;cellular protein metabolic process;1.55554910509641e-40!GO:0010467;gene expression;4.91676884482545e-40!GO:0006259;DNA metabolic process;8.45508754790642e-39!GO:0006996;organelle organization and biogenesis;9.25565785052239e-39!GO:0016071;mRNA metabolic process;4.15244497126685e-38!GO:0005829;cytosol;4.16091651386862e-38!GO:0008380;RNA splicing;4.23933552967037e-37!GO:0046907;intracellular transport;1.48517401476767e-36!GO:0048770;pigment granule;1.49703485477075e-35!GO:0042470;melanosome;1.49703485477075e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.84718031720709e-35!GO:0043228;non-membrane-bound organelle;6.21163362567689e-35!GO:0043232;intracellular non-membrane-bound organelle;6.21163362567689e-35!GO:0005740;mitochondrial envelope;1.49191522872357e-34!GO:0006397;mRNA processing;2.25672922051555e-33!GO:0065003;macromolecular complex assembly;2.89864748022404e-33!GO:0031966;mitochondrial membrane;3.72357417004986e-32!GO:0019866;organelle inner membrane;1.18504016547772e-31!GO:0006886;intracellular protein transport;2.02646578286512e-31!GO:0022607;cellular component assembly;1.30150079212995e-29!GO:0005743;mitochondrial inner membrane;3.80700840032365e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.99973020684468e-29!GO:0007049;cell cycle;2.67419073532317e-28!GO:0012505;endomembrane system;4.43383335554943e-27!GO:0005681;spliceosome;2.43219642781765e-26!GO:0005654;nucleoplasm;7.31263385575412e-26!GO:0003676;nucleic acid binding;1.39618778424227e-25!GO:0016462;pyrophosphatase activity;2.10103891961109e-25!GO:0000166;nucleotide binding;2.75791902906619e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.91521400771136e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;4.10472314520879e-25!GO:0006119;oxidative phosphorylation;1.97867372267227e-24!GO:0017111;nucleoside-triphosphatase activity;3.11014138633987e-24!GO:0044445;cytosolic part;3.71610684776785e-24!GO:0051649;establishment of cellular localization;4.17790560266368e-24!GO:0051641;cellular localization;4.52080009192171e-24!GO:0006974;response to DNA damage stimulus;3.85752220180156e-22!GO:0031980;mitochondrial lumen;6.52213814981803e-22!GO:0005759;mitochondrial matrix;6.52213814981803e-22!GO:0044455;mitochondrial membrane part;1.63204033477475e-21!GO:0005783;endoplasmic reticulum;1.69397854050178e-21!GO:0022402;cell cycle process;1.75516322385255e-21!GO:0015935;small ribosomal subunit;3.39594249882013e-21!GO:0015934;large ribosomal subunit;3.39594249882013e-21!GO:0005694;chromosome;9.9110287476223e-21!GO:0006457;protein folding;1.06673979091983e-20!GO:0044451;nucleoplasm part;1.82818733747079e-20!GO:0005730;nucleolus;5.32258240387711e-20!GO:0000278;mitotic cell cycle;1.01356591231183e-19!GO:0006281;DNA repair;2.24111067903386e-19!GO:0044427;chromosomal part;3.53123237869661e-19!GO:0022618;protein-RNA complex assembly;6.51349506576477e-19!GO:0032553;ribonucleotide binding;8.7606639056864e-19!GO:0032555;purine ribonucleotide binding;8.7606639056864e-19!GO:0017076;purine nucleotide binding;3.36657952502371e-18!GO:0016874;ligase activity;4.00503599177819e-18!GO:0006260;DNA replication;4.97066136321567e-18!GO:0005746;mitochondrial respiratory chain;5.81432072691481e-18!GO:0051186;cofactor metabolic process;7.76154661489719e-18!GO:0044432;endoplasmic reticulum part;1.20512676072009e-17!GO:0042254;ribosome biogenesis and assembly;2.31855533945786e-17!GO:0016070;RNA metabolic process;3.57454625422781e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.18242457522615e-17!GO:0022403;cell cycle phase;1.06845216236833e-16!GO:0005761;mitochondrial ribosome;1.25530211151837e-16!GO:0000313;organellar ribosome;1.25530211151837e-16!GO:0043285;biopolymer catabolic process;2.18184967319549e-16!GO:0005524;ATP binding;2.8670197590141e-16!GO:0006512;ubiquitin cycle;3.2177739263769e-16!GO:0005794;Golgi apparatus;3.51591536845389e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.6645946867263e-16!GO:0003954;NADH dehydrogenase activity;3.6645946867263e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.6645946867263e-16!GO:0044265;cellular macromolecule catabolic process;3.86855410907111e-16!GO:0051082;unfolded protein binding;5.79101681755985e-16!GO:0032559;adenyl ribonucleotide binding;9.12197445778494e-16!GO:0009057;macromolecule catabolic process;1.2312816417019e-15!GO:0051276;chromosome organization and biogenesis;1.23520968380853e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.26158881010654e-15!GO:0006605;protein targeting;1.90714651586598e-15!GO:0051301;cell division;3.86105667169748e-15!GO:0009719;response to endogenous stimulus;4.29160052783122e-15!GO:0008135;translation factor activity, nucleic acid binding;4.7301383125401e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.25871107889587e-15!GO:0030554;adenyl nucleotide binding;5.25871107889587e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;5.37456771386851e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.21934055472245e-15!GO:0044248;cellular catabolic process;8.12681080172303e-15!GO:0019941;modification-dependent protein catabolic process;8.43890933679479e-15!GO:0043632;modification-dependent macromolecule catabolic process;8.43890933679479e-15!GO:0005635;nuclear envelope;1.18982722285724e-14!GO:0044257;cellular protein catabolic process;1.30351709573258e-14!GO:0042623;ATPase activity, coupled;1.44311138044482e-14!GO:0000087;M phase of mitotic cell cycle;1.51536227370565e-14!GO:0016887;ATPase activity;1.61361537022151e-14!GO:0008134;transcription factor binding;1.70932525422893e-14!GO:0030163;protein catabolic process;1.73977029875512e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.79868428318188e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.17626653900066e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.46139930169261e-14!GO:0045271;respiratory chain complex I;2.46139930169261e-14!GO:0005747;mitochondrial respiratory chain complex I;2.46139930169261e-14!GO:0007067;mitosis;2.74661092706949e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.83494751348429e-14!GO:0042773;ATP synthesis coupled electron transport;2.83494751348429e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;5.08123518971961e-14!GO:0000375;RNA splicing, via transesterification reactions;5.08123518971961e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.08123518971961e-14!GO:0006732;coenzyme metabolic process;6.87270459950469e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.55302257531495e-14!GO:0031965;nuclear membrane;8.62223997259358e-14!GO:0000279;M phase;1.23193909186168e-13!GO:0044453;nuclear membrane part;1.80970186047299e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.71945367634445e-13!GO:0006399;tRNA metabolic process;3.99100048974252e-13!GO:0043412;biopolymer modification;6.42622892191633e-13!GO:0005789;endoplasmic reticulum membrane;6.77566647109341e-13!GO:0009259;ribonucleotide metabolic process;2.84157816252599e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;3.15263331851048e-12!GO:0006364;rRNA processing;4.09111475145634e-12!GO:0048193;Golgi vesicle transport;4.85725645888679e-12!GO:0006163;purine nucleotide metabolic process;5.7948211862105e-12!GO:0006413;translational initiation;5.96144683735816e-12!GO:0003743;translation initiation factor activity;6.2203553968619e-12!GO:0051726;regulation of cell cycle;9.36021433001852e-12!GO:0006323;DNA packaging;1.09208801254453e-11!GO:0016072;rRNA metabolic process;1.57479126454809e-11!GO:0000074;regulation of progression through cell cycle;2.20064986638087e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.34133867808935e-11!GO:0009150;purine ribonucleotide metabolic process;2.58902244599296e-11!GO:0006464;protein modification process;3.8255790276437e-11!GO:0008565;protein transporter activity;4.94799903071738e-11!GO:0016604;nuclear body;5.87605117905233e-11!GO:0000785;chromatin;8.7444261157453e-11!GO:0005643;nuclear pore;9.45159369791118e-11!GO:0006164;purine nucleotide biosynthetic process;1.10805881557461e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.12708415552666e-10!GO:0006446;regulation of translational initiation;1.18155832283175e-10!GO:0016192;vesicle-mediated transport;1.37908106164116e-10!GO:0009141;nucleoside triphosphate metabolic process;1.5828508236202e-10!GO:0009260;ribonucleotide biosynthetic process;1.77457536228861e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.16435437817156e-10!GO:0009144;purine nucleoside triphosphate metabolic process;2.16435437817156e-10!GO:0004386;helicase activity;2.41678335143245e-10!GO:0065002;intracellular protein transport across a membrane;2.4980363815467e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.08571972230291e-10!GO:0005768;endosome;4.48247675106497e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.88833567995329e-10!GO:0051188;cofactor biosynthetic process;4.92570917326379e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.85414856781968e-10!GO:0031988;membrane-bound vesicle;6.62203645734005e-10!GO:0006333;chromatin assembly or disassembly;6.75465414009174e-10!GO:0065004;protein-DNA complex assembly;7.0468343705447e-10!GO:0009055;electron carrier activity;7.0468343705447e-10!GO:0016023;cytoplasmic membrane-bound vesicle;9.3562678121878e-10!GO:0015986;ATP synthesis coupled proton transport;1.72531468613626e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.72531468613626e-09!GO:0009056;catabolic process;1.75380511419328e-09!GO:0046034;ATP metabolic process;1.93390810930647e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.35968662887025e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.35968662887025e-09!GO:0005793;ER-Golgi intermediate compartment;2.4452939550556e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.7004549749743e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.7004549749743e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.7004549749743e-09!GO:0003712;transcription cofactor activity;2.83083274636569e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.94287934608694e-09!GO:0008639;small protein conjugating enzyme activity;3.22759097304678e-09!GO:0006461;protein complex assembly;3.3542573538498e-09!GO:0008026;ATP-dependent helicase activity;3.53165494838192e-09!GO:0003697;single-stranded DNA binding;4.42822348470358e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.46601539770649e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.46601539770649e-09!GO:0006913;nucleocytoplasmic transport;4.50472417624027e-09!GO:0043038;amino acid activation;4.90016007996576e-09!GO:0006418;tRNA aminoacylation for protein translation;4.90016007996576e-09!GO:0043039;tRNA aminoacylation;4.90016007996576e-09!GO:0019787;small conjugating protein ligase activity;5.053770845849e-09!GO:0046930;pore complex;6.33409412653635e-09!GO:0031982;vesicle;6.36609349781888e-09!GO:0050657;nucleic acid transport;6.40516022396114e-09!GO:0051236;establishment of RNA localization;6.40516022396114e-09!GO:0050658;RNA transport;6.40516022396114e-09!GO:0006403;RNA localization;6.40516022396114e-09!GO:0006261;DNA-dependent DNA replication;6.62565729444477e-09!GO:0005773;vacuole;6.63917828313374e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.94527074123573e-09!GO:0016607;nuclear speck;7.14325602979472e-09!GO:0009060;aerobic respiration;7.28497410254063e-09!GO:0015630;microtubule cytoskeleton;8.62596067357815e-09!GO:0051169;nuclear transport;9.08030499012397e-09!GO:0004842;ubiquitin-protein ligase activity;9.12097542658212e-09!GO:0016740;transferase activity;9.80572101060898e-09!GO:0009117;nucleotide metabolic process;9.89259180316664e-09!GO:0043566;structure-specific DNA binding;1.06847268735069e-08!GO:0031410;cytoplasmic vesicle;1.09252034081468e-08!GO:0016787;hydrolase activity;1.14314436835319e-08!GO:0016469;proton-transporting two-sector ATPase complex;1.29670801026776e-08!GO:0019829;cation-transporting ATPase activity;1.35710748858774e-08!GO:0008654;phospholipid biosynthetic process;1.56291862672253e-08!GO:0007005;mitochondrion organization and biogenesis;1.71744363956933e-08!GO:0045333;cellular respiration;1.77866848052759e-08!GO:0044431;Golgi apparatus part;2.61483820949624e-08!GO:0016881;acid-amino acid ligase activity;2.75138315205946e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.77992619063309e-08!GO:0043687;post-translational protein modification;3.04202905915994e-08!GO:0006754;ATP biosynthetic process;3.62801819319818e-08!GO:0006753;nucleoside phosphate metabolic process;3.62801819319818e-08!GO:0006334;nucleosome assembly;4.82618397614181e-08!GO:0009108;coenzyme biosynthetic process;6.42564671555099e-08!GO:0031497;chromatin assembly;7.14057726193143e-08!GO:0016779;nucleotidyltransferase activity;8.2715606793075e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.6101061830032e-08!GO:0000323;lytic vacuole;1.09341065351372e-07!GO:0005764;lysosome;1.09341065351372e-07!GO:0012501;programmed cell death;1.22557368390821e-07!GO:0006099;tricarboxylic acid cycle;1.29939080520349e-07!GO:0046356;acetyl-CoA catabolic process;1.29939080520349e-07!GO:0006915;apoptosis;1.43763862386857e-07!GO:0016853;isomerase activity;2.01875557767621e-07!GO:0006084;acetyl-CoA metabolic process;2.35063880215938e-07!GO:0005770;late endosome;2.58657076818198e-07!GO:0051028;mRNA transport;3.0022098259439e-07!GO:0003924;GTPase activity;3.44905022232393e-07!GO:0017038;protein import;3.5939608029247e-07!GO:0048475;coated membrane;3.93477727396901e-07!GO:0030117;membrane coat;3.93477727396901e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.97160948328267e-07!GO:0008094;DNA-dependent ATPase activity;4.85933197225814e-07!GO:0030120;vesicle coat;6.03342290376553e-07!GO:0030662;coated vesicle membrane;6.03342290376553e-07!GO:0005657;replication fork;7.29406175917417e-07!GO:0016568;chromatin modification;8.26779325358157e-07!GO:0000245;spliceosome assembly;8.29231341942264e-07!GO:0005819;spindle;8.90955575377961e-07!GO:0006752;group transfer coenzyme metabolic process;1.02783105980158e-06!GO:0005788;endoplasmic reticulum lumen;1.07091368497886e-06!GO:0046467;membrane lipid biosynthetic process;1.10078042579078e-06!GO:0043623;cellular protein complex assembly;1.23166353186263e-06!GO:0009109;coenzyme catabolic process;1.34056385759358e-06!GO:0051187;cofactor catabolic process;1.36488582818149e-06!GO:0045259;proton-transporting ATP synthase complex;1.37896073906094e-06!GO:0006366;transcription from RNA polymerase II promoter;1.48482308956696e-06!GO:0051329;interphase of mitotic cell cycle;1.58126528077965e-06!GO:0005762;mitochondrial large ribosomal subunit;1.62449639380515e-06!GO:0000315;organellar large ribosomal subunit;1.62449639380515e-06!GO:0005798;Golgi-associated vesicle;1.66485618263292e-06!GO:0008219;cell death;1.76595055224953e-06!GO:0016265;death;1.76595055224953e-06!GO:0044440;endosomal part;1.80365133474707e-06!GO:0010008;endosome membrane;1.80365133474707e-06!GO:0032446;protein modification by small protein conjugation;1.80365133474707e-06!GO:0046474;glycerophospholipid biosynthetic process;1.8906172445581e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.16478105501894e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.36709622107634e-06!GO:0016567;protein ubiquitination;2.39532376168846e-06!GO:0051325;interphase;2.5864263452991e-06!GO:0016491;oxidoreductase activity;3.20824027147707e-06!GO:0000775;chromosome, pericentric region;3.20824027147707e-06!GO:0000139;Golgi membrane;3.78448178677777e-06!GO:0042440;pigment metabolic process;4.51978668294558e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.92614791789083e-06!GO:0046148;pigment biosynthetic process;5.35429181989113e-06!GO:0051246;regulation of protein metabolic process;6.01968201487324e-06!GO:0048523;negative regulation of cellular process;6.45034171158897e-06!GO:0006916;anti-apoptosis;6.61087003145541e-06!GO:0003899;DNA-directed RNA polymerase activity;7.40002529270178e-06!GO:0005667;transcription factor complex;7.62836946726181e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.85335180465749e-06!GO:0004298;threonine endopeptidase activity;1.08691345181672e-05!GO:0005525;GTP binding;1.15356502135021e-05!GO:0030659;cytoplasmic vesicle membrane;1.22377466614487e-05!GO:0006613;cotranslational protein targeting to membrane;1.43289541338505e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.70928633030216e-05!GO:0050794;regulation of cellular process;1.75677158038105e-05!GO:0019843;rRNA binding;1.80817746360608e-05!GO:0000151;ubiquitin ligase complex;1.91391776254672e-05!GO:0003724;RNA helicase activity;1.93178018156006e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.09000291591557e-05!GO:0000075;cell cycle checkpoint;2.19561474356e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.28349908652467e-05!GO:0000314;organellar small ribosomal subunit;2.395046584016e-05!GO:0005763;mitochondrial small ribosomal subunit;2.395046584016e-05!GO:0008033;tRNA processing;2.52592469599507e-05!GO:0031252;leading edge;2.64176400581659e-05!GO:0006650;glycerophospholipid metabolic process;3.05403734548603e-05!GO:0016859;cis-trans isomerase activity;3.2714334765127e-05!GO:0045786;negative regulation of progression through cell cycle;3.39951286524884e-05!GO:0006643;membrane lipid metabolic process;3.51122862684701e-05!GO:0005813;centrosome;3.61182959716636e-05!GO:0043021;ribonucleoprotein binding;3.73849816688378e-05!GO:0008610;lipid biosynthetic process;4.07144435946632e-05!GO:0031968;organelle outer membrane;4.31201493096251e-05!GO:0006612;protein targeting to membrane;4.33290352075521e-05!GO:0046489;phosphoinositide biosynthetic process;4.49379076540092e-05!GO:0005769;early endosome;4.76587339030397e-05!GO:0005815;microtubule organizing center;5.07525286294316e-05!GO:0044433;cytoplasmic vesicle part;5.27024795543777e-05!GO:0006793;phosphorus metabolic process;5.33813886591487e-05!GO:0006796;phosphate metabolic process;5.33813886591487e-05!GO:0006626;protein targeting to mitochondrion;5.54784619129519e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.61341393037057e-05!GO:0012506;vesicle membrane;5.75063452428553e-05!GO:0019867;outer membrane;5.76010565642749e-05!GO:0030867;rough endoplasmic reticulum membrane;6.83582278617696e-05!GO:0042802;identical protein binding;7.13802130310587e-05!GO:0044452;nucleolar part;7.13802130310587e-05!GO:0006302;double-strand break repair;7.79866297903505e-05!GO:0006091;generation of precursor metabolites and energy;8.05827875380761e-05!GO:0048066;pigmentation during development;8.61617784881013e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.66457500626144e-05!GO:0045454;cell redox homeostasis;8.69465696568758e-05!GO:0030133;transport vesicle;9.53613167530756e-05!GO:0051427;hormone receptor binding;9.64672551265882e-05!GO:0009165;nucleotide biosynthetic process;0.000104469787268731!GO:0015631;tubulin binding;0.000104662955937624!GO:0042981;regulation of apoptosis;0.000106395853528579!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000110434663927758!GO:0015399;primary active transmembrane transporter activity;0.000110434663927758!GO:0043069;negative regulation of programmed cell death;0.000112324065408217!GO:0032561;guanyl ribonucleotide binding;0.000115022251658174!GO:0019001;guanyl nucleotide binding;0.000115022251658174!GO:0016563;transcription activator activity;0.000116971355069945!GO:0003714;transcription corepressor activity;0.000122454161364946!GO:0003713;transcription coactivator activity;0.000125940937765435!GO:0003684;damaged DNA binding;0.000125956100570423!GO:0005741;mitochondrial outer membrane;0.000125956100570423!GO:0043067;regulation of programmed cell death;0.000126651992122457!GO:0048471;perinuclear region of cytoplasm;0.000128450993428297!GO:0048519;negative regulation of biological process;0.000128634540094211!GO:0006839;mitochondrial transport;0.000135608424818913!GO:0007051;spindle organization and biogenesis;0.000136600981340023!GO:0043066;negative regulation of apoptosis;0.000136948799203913!GO:0006310;DNA recombination;0.000136948799203913!GO:0051170;nuclear import;0.000158818577449773!GO:0006383;transcription from RNA polymerase III promoter;0.00016123580873589!GO:0016363;nuclear matrix;0.000178937275369466!GO:0016564;transcription repressor activity;0.000184240994738295!GO:0000786;nucleosome;0.000192079639393949!GO:0051168;nuclear export;0.00019366266836483!GO:0035257;nuclear hormone receptor binding;0.000196993849668854!GO:0043681;protein import into mitochondrion;0.000202484218604524!GO:0019899;enzyme binding;0.000206223213423727!GO:0003690;double-stranded DNA binding;0.000206596776264242!GO:0044262;cellular carbohydrate metabolic process;0.000212977429887794!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000225660350474341!GO:0003682;chromatin binding;0.000227904200621394!GO:0019748;secondary metabolic process;0.000258715041842813!GO:0000059;protein import into nucleus, docking;0.000284383608344703!GO:0006606;protein import into nucleus;0.000284383608344703!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000307947049741567!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000312217702769337!GO:0051789;response to protein stimulus;0.000318355697982295!GO:0006986;response to unfolded protein;0.000318355697982295!GO:0005905;coated pit;0.000320305765457721!GO:0016310;phosphorylation;0.000323418206009769!GO:0005885;Arp2/3 protein complex;0.000332516816879245!GO:0031324;negative regulation of cellular metabolic process;0.000347123367830248!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000357351097706112!GO:0004527;exonuclease activity;0.0003910847951509!GO:0031072;heat shock protein binding;0.000406697604977361!GO:0004576;oligosaccharyl transferase activity;0.000412289769612411!GO:0003678;DNA helicase activity;0.000416867635539529!GO:0008186;RNA-dependent ATPase activity;0.00045623035611254!GO:0033116;ER-Golgi intermediate compartment membrane;0.000470465163193879!GO:0007034;vacuolar transport;0.0004865433454077!GO:0007059;chromosome segregation;0.000492389187023363!GO:0008250;oligosaccharyl transferase complex;0.000501816293440855!GO:0005874;microtubule;0.000539351242681152!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000570827708930821!GO:0033162;melanosome membrane;0.000570827708930821!GO:0045009;chitosome;0.000570827708930821!GO:0030880;RNA polymerase complex;0.0005760943706768!GO:0043284;biopolymer biosynthetic process;0.000585582534784546!GO:0016126;sterol biosynthetic process;0.000602554684636929!GO:0007006;mitochondrial membrane organization and biogenesis;0.0006177043196896!GO:0000776;kinetochore;0.000644265888447218!GO:0005791;rough endoplasmic reticulum;0.000694515465210927!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000735807042396319!GO:0005048;signal sequence binding;0.000746560207040314!GO:0006818;hydrogen transport;0.000766173981468956!GO:0030384;phosphoinositide metabolic process;0.000779819683626853!GO:0006506;GPI anchor biosynthetic process;0.000791898177304321!GO:0051920;peroxiredoxin activity;0.00080457050108869!GO:0046519;sphingoid metabolic process;0.000806735098122907!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000817548874515901!GO:0007040;lysosome organization and biogenesis;0.000848631922491642!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000868720712301457!GO:0051052;regulation of DNA metabolic process;0.000872471093899396!GO:0007010;cytoskeleton organization and biogenesis;0.000878933143955827!GO:0006672;ceramide metabolic process;0.000904587728914641!GO:0030118;clathrin coat;0.000918291431197892!GO:0004518;nuclease activity;0.000960814945287449!GO:0042158;lipoprotein biosynthetic process;0.000990788961891264!GO:0031902;late endosome membrane;0.000991936519281674!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103540447707516!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103540447707516!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103540447707516!GO:0032508;DNA duplex unwinding;0.00104372299750995!GO:0032392;DNA geometric change;0.00104372299750995!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00107962903486364!GO:0006414;translational elongation;0.00114763830894168!GO:0009892;negative regulation of metabolic process;0.00116594259067668!GO:0030658;transport vesicle membrane;0.00116594259067668!GO:0043492;ATPase activity, coupled to movement of substances;0.00116594259067668!GO:0006505;GPI anchor metabolic process;0.00119158367829582!GO:0015992;proton transport;0.00119375562785371!GO:0006497;protein amino acid lipidation;0.00119375562785371!GO:0004004;ATP-dependent RNA helicase activity;0.00122856295698711!GO:0007033;vacuole organization and biogenesis;0.00125915685147808!GO:0005774;vacuolar membrane;0.00131548523737344!GO:0003729;mRNA binding;0.00132128898234117!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00133925758874782!GO:0000428;DNA-directed RNA polymerase complex;0.00133925758874782!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00136711069309903!GO:0006644;phospholipid metabolic process;0.00139646083304683!GO:0005637;nuclear inner membrane;0.00140646787422271!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00141685786412879!GO:0005684;U2-dependent spliceosome;0.00153504133632372!GO:0007088;regulation of mitosis;0.00154325586853063!GO:0006268;DNA unwinding during replication;0.00156297990264493!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00163902836563004!GO:0006270;DNA replication initiation;0.00169116756136897!GO:0016197;endosome transport;0.0017327548783635!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00178055745042373!GO:0019752;carboxylic acid metabolic process;0.00185487853162205!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00188604858415688!GO:0031970;organelle envelope lumen;0.00191513269519861!GO:0051252;regulation of RNA metabolic process;0.00197425237988265!GO:0006082;organic acid metabolic process;0.00202619652401649!GO:0016741;transferase activity, transferring one-carbon groups;0.00218691520857831!GO:0000228;nuclear chromosome;0.0022013163877665!GO:0018196;peptidyl-asparagine modification;0.00229521800754843!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00229521800754843!GO:0008168;methyltransferase activity;0.00253897752140221!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00280524251259701!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00280524251259701!GO:0035258;steroid hormone receptor binding;0.00284414181664202!GO:0006402;mRNA catabolic process;0.00287903731159397!GO:0048487;beta-tubulin binding;0.00297190082363995!GO:0043596;nuclear replication fork;0.00302488819704742!GO:0006509;membrane protein ectodomain proteolysis;0.0030350963764538!GO:0033619;membrane protein proteolysis;0.0030350963764538!GO:0008092;cytoskeletal protein binding;0.00311835285165722!GO:0006695;cholesterol biosynthetic process;0.00336978109296195!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00340474790744909!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00341348766281034!GO:0048500;signal recognition particle;0.00342764843007705!GO:0006284;base-excision repair;0.00350977209065307!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00353825877197441!GO:0030176;integral to endoplasmic reticulum membrane;0.00357384297497053!GO:0007041;lysosomal transport;0.00368287236430276!GO:0006352;transcription initiation;0.00372617367267803!GO:0006611;protein export from nucleus;0.00372931999921827!GO:0030660;Golgi-associated vesicle membrane;0.00379016140818082!GO:0008312;7S RNA binding;0.00381249651652565!GO:0007093;mitotic cell cycle checkpoint;0.00386387970808979!GO:0044437;vacuolar part;0.00396331380434842!GO:0042393;histone binding;0.00409421431578975!GO:0006401;RNA catabolic process;0.00416883165688766!GO:0022890;inorganic cation transmembrane transporter activity;0.00416999060433279!GO:0008022;protein C-terminus binding;0.00427022983869568!GO:0043488;regulation of mRNA stability;0.004309125662479!GO:0043487;regulation of RNA stability;0.004309125662479!GO:0008361;regulation of cell size;0.00440302467903294!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00447095207880969!GO:0005876;spindle microtubule;0.00450604937330432!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00456794003532399!GO:0030036;actin cytoskeleton organization and biogenesis;0.00469820097480695!GO:0050662;coenzyme binding;0.00469880145552244!GO:0005758;mitochondrial intermembrane space;0.00473886003302154!GO:0006289;nucleotide-excision repair;0.00477242694398458!GO:0008180;signalosome;0.00478951526457326!GO:0050789;regulation of biological process;0.00480593252637324!GO:0000178;exosome (RNase complex);0.00487652724573469!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00502037478097613!GO:0065009;regulation of a molecular function;0.00504416171057318!GO:0000049;tRNA binding;0.0051077257531503!GO:0030663;COPI coated vesicle membrane;0.00523818290368031!GO:0030126;COPI vesicle coat;0.00523818290368031!GO:0030119;AP-type membrane coat adaptor complex;0.00532624250246971!GO:0016860;intramolecular oxidoreductase activity;0.00543134699103331!GO:0005765;lysosomal membrane;0.00545555575608223!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00551513850595731!GO:0051287;NAD binding;0.0055651632593205!GO:0019222;regulation of metabolic process;0.00564102081663492!GO:0006275;regulation of DNA replication;0.00574781141792018!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00596459578742695!GO:0045047;protein targeting to ER;0.00596459578742695!GO:0000922;spindle pole;0.00597893336358501!GO:0001726;ruffle;0.00614249280779119!GO:0006891;intra-Golgi vesicle-mediated transport;0.00615022087016553!GO:0006520;amino acid metabolic process;0.00618290973464401!GO:0004003;ATP-dependent DNA helicase activity;0.00620492749197618!GO:0006338;chromatin remodeling;0.00620492749197618!GO:0007052;mitotic spindle organization and biogenesis;0.00620965361610376!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00628389751454892!GO:0016049;cell growth;0.00644260621942908!GO:0051539;4 iron, 4 sulfur cluster binding;0.00682713523136664!GO:0000287;magnesium ion binding;0.00685787343539572!GO:0000082;G1/S transition of mitotic cell cycle;0.00696508393994432!GO:0005869;dynactin complex;0.00715853760951986!GO:0048069;eye pigmentation;0.0072753381131767!GO:0051087;chaperone binding;0.00741958454688324!GO:0006582;melanin metabolic process;0.00752795862308106!GO:0006583;melanin biosynthetic process from tyrosine;0.00752795862308106!GO:0042438;melanin biosynthetic process;0.00752795862308106!GO:0046483;heterocycle metabolic process;0.00754110101954552!GO:0030131;clathrin adaptor complex;0.00754476226430466!GO:0009116;nucleoside metabolic process;0.0075940915737582!GO:0030521;androgen receptor signaling pathway;0.00788164011697789!GO:0043022;ribosome binding;0.00790209028530385!GO:0001558;regulation of cell growth;0.00812014543379279!GO:0048154;S100 beta binding;0.0081571308404334!GO:0031301;integral to organelle membrane;0.00821528845159318!GO:0006778;porphyrin metabolic process;0.00834633415500538!GO:0033013;tetrapyrrole metabolic process;0.00834633415500538!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00853278023554583!GO:0016481;negative regulation of transcription;0.00860605434772577!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00868654050997406!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00868654050997406!GO:0008017;microtubule binding;0.00891418068645853!GO:0005832;chaperonin-containing T-complex;0.00903167110661131!GO:0006405;RNA export from nucleus;0.00913680488612748!GO:0044454;nuclear chromosome part;0.00913680488612748!GO:0030125;clathrin vesicle coat;0.00928228904130265!GO:0030665;clathrin coated vesicle membrane;0.00928228904130265!GO:0006220;pyrimidine nucleotide metabolic process;0.009307392383534!GO:0006144;purine base metabolic process;0.00935137669019711!GO:0003711;transcription elongation regulator activity;0.00955164456470754!GO:0004177;aminopeptidase activity;0.00985303376323386!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0100287745137175!GO:0017166;vinculin binding;0.0100369398304315!GO:0007346;regulation of progression through mitotic cell cycle;0.0100615180814422!GO:0016251;general RNA polymerase II transcription factor activity;0.0101702446872!GO:0016272;prefoldin complex;0.0105446115531441!GO:0006726;eye pigment biosynthetic process;0.0105446115531441!GO:0042441;eye pigment metabolic process;0.0105446115531441!GO:0003746;translation elongation factor activity;0.0105446115531441!GO:0006007;glucose catabolic process;0.0105446115531441!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0110015688622908!GO:0015002;heme-copper terminal oxidase activity;0.0110015688622908!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0110015688622908!GO:0004129;cytochrome-c oxidase activity;0.0110015688622908!GO:0008408;3'-5' exonuclease activity;0.0110395844568704!GO:0051540;metal cluster binding;0.0110585842690342!GO:0051536;iron-sulfur cluster binding;0.0110585842690342!GO:0006779;porphyrin biosynthetic process;0.0121737460189915!GO:0033014;tetrapyrrole biosynthetic process;0.0121737460189915!GO:0031124;mRNA 3'-end processing;0.0121853287770263!GO:0004532;exoribonuclease activity;0.0122133724486633!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0122133724486633!GO:0007017;microtubule-based process;0.0122133724486633!GO:0043601;nuclear replisome;0.0123826828041696!GO:0030894;replisome;0.0123826828041696!GO:0030496;midbody;0.0124284454785765!GO:0008139;nuclear localization sequence binding;0.0127560335234203!GO:0030137;COPI-coated vesicle;0.0128453825378958!GO:0030132;clathrin coat of coated pit;0.0129318413162838!GO:0007050;cell cycle arrest;0.0129723020035952!GO:0007243;protein kinase cascade;0.0133431908064662!GO:0000725;recombinational repair;0.0134254895062166!GO:0000724;double-strand break repair via homologous recombination;0.0134254895062166!GO:0030145;manganese ion binding;0.0136183056164402!GO:0000339;RNA cap binding;0.0137413244667556!GO:0005663;DNA replication factor C complex;0.0142856440748284!GO:0006665;sphingolipid metabolic process;0.0143499857881335!GO:0000910;cytokinesis;0.0144010750353426!GO:0030140;trans-Golgi network transport vesicle;0.0146898351484593!GO:0008320;protein transmembrane transporter activity;0.0153768313747278!GO:0009112;nucleobase metabolic process;0.0154362274967857!GO:0030027;lamellipodium;0.0155292487526725!GO:0009451;RNA modification;0.0157608513120334!GO:0019206;nucleoside kinase activity;0.0161962278696368!GO:0031901;early endosome membrane;0.0161962278696368!GO:0030029;actin filament-based process;0.0168666878869569!GO:0006740;NADPH regeneration;0.0170664993779365!GO:0006098;pentose-phosphate shunt;0.0170664993779365!GO:0050681;androgen receptor binding;0.0170767987619209!GO:0016584;nucleosome positioning;0.0175901894826726!GO:0008234;cysteine-type peptidase activity;0.0181649880558508!GO:0031529;ruffle organization and biogenesis;0.0183400867631978!GO:0000030;mannosyltransferase activity;0.0183902037077368!GO:0009303;rRNA transcription;0.018715542887908!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0192387035661807!GO:0030149;sphingolipid catabolic process;0.019319765267391!GO:0005975;carbohydrate metabolic process;0.0194622156779759!GO:0007021;tubulin folding;0.0198095955170065!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0199706201424214!GO:0010257;NADH dehydrogenase complex assembly;0.0199706201424214!GO:0033108;mitochondrial respiratory chain complex assembly;0.0199706201424214!GO:0030134;ER to Golgi transport vesicle;0.0199706201424214!GO:0008047;enzyme activator activity;0.0199826426260047!GO:0008632;apoptotic program;0.0204379167944081!GO:0005665;DNA-directed RNA polymerase II, core complex;0.020612395743151!GO:0022406;membrane docking;0.0207000058597403!GO:0048278;vesicle docking;0.0207000058597403!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0210429584162329!GO:0051452;cellular pH reduction;0.02153474515912!GO:0051453;regulation of cellular pH;0.02153474515912!GO:0045851;pH reduction;0.02153474515912!GO:0004523;ribonuclease H activity;0.021634455154949!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0216384774388749!GO:0006376;mRNA splice site selection;0.0218674123338054!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0218674123338054!GO:0006595;polyamine metabolic process;0.0224427603548062!GO:0007264;small GTPase mediated signal transduction;0.0230588319165825!GO:0030508;thiol-disulfide exchange intermediate activity;0.0231241916690201!GO:0050811;GABA receptor binding;0.0231892103847992!GO:0051053;negative regulation of DNA metabolic process;0.0236130024799946!GO:0004674;protein serine/threonine kinase activity;0.0236450375051198!GO:0042026;protein refolding;0.0238058984649331!GO:0006914;autophagy;0.023823361242277!GO:0016408;C-acyltransferase activity;0.0238661039104929!GO:0005669;transcription factor TFIID complex;0.0242451820350304!GO:0050931;pigment cell differentiation;0.0246443906009045!GO:0030318;melanocyte differentiation;0.0246443906009045!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0247628451306457!GO:0030127;COPII vesicle coat;0.0247628451306457!GO:0012507;ER to Golgi transport vesicle membrane;0.0247628451306457!GO:0006733;oxidoreduction coenzyme metabolic process;0.0252401948411464!GO:0001573;ganglioside metabolic process;0.0257229093241967!GO:0044255;cellular lipid metabolic process;0.0263891634865432!GO:0016044;membrane organization and biogenesis;0.0264905208618121!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0264905208618121!GO:0046813;virion attachment, binding of host cell surface receptor;0.0264905208618121!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0264905208618121!GO:0042168;heme metabolic process;0.0265090513877677!GO:0030518;steroid hormone receptor signaling pathway;0.0269250599118685!GO:0006378;mRNA polyadenylation;0.0270663814055952!GO:0004503;monophenol monooxygenase activity;0.0274314933685659!GO:0016716;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen;0.0274314933685659!GO:0006730;one-carbon compound metabolic process;0.0275578157115615!GO:0000096;sulfur amino acid metabolic process;0.0279881701855355!GO:0000118;histone deacetylase complex;0.0281145303340892!GO:0032984;macromolecular complex disassembly;0.0281405531457944!GO:0050790;regulation of catalytic activity;0.0288103493205986!GO:0006904;vesicle docking during exocytosis;0.0289631566924561!GO:0004448;isocitrate dehydrogenase activity;0.0291353969838007!GO:0031371;ubiquitin conjugating enzyme complex;0.0298565413462875!GO:0031570;DNA integrity checkpoint;0.0299617120943834!GO:0000792;heterochromatin;0.0300055206958395!GO:0004722;protein serine/threonine phosphatase activity;0.0306587618044436!GO:0045045;secretory pathway;0.0306587618044436!GO:0008538;proteasome activator activity;0.0306686076494131!GO:0043414;biopolymer methylation;0.0310382270751811!GO:0000726;non-recombinational repair;0.0311025902338682!GO:0001725;stress fiber;0.0316445958251272!GO:0032432;actin filament bundle;0.0316445958251272!GO:0006360;transcription from RNA polymerase I promoter;0.0316877543619708!GO:0048522;positive regulation of cellular process;0.032551070620798!GO:0000084;S phase of mitotic cell cycle;0.0327477327899828!GO:0030911;TPR domain binding;0.0327584351211815!GO:0003923;GPI-anchor transamidase activity;0.0330392735684556!GO:0016255;attachment of GPI anchor to protein;0.0330392735684556!GO:0042765;GPI-anchor transamidase complex;0.0330392735684556!GO:0003887;DNA-directed DNA polymerase activity;0.0330701195970298!GO:0004549;tRNA-specific ribonuclease activity;0.0333727206636004!GO:0006767;water-soluble vitamin metabolic process;0.0341608547233168!GO:0005652;nuclear lamina;0.0346026324802249!GO:0043624;cellular protein complex disassembly;0.0346093825469778!GO:0006807;nitrogen compound metabolic process;0.0347701717677462!GO:0030503;regulation of cell redox homeostasis;0.0349753640888842!GO:0004526;ribonuclease P activity;0.0352619436182256!GO:0033673;negative regulation of kinase activity;0.0354493970392959!GO:0006469;negative regulation of protein kinase activity;0.0354493970392959!GO:0000209;protein polyubiquitination;0.0359930579131791!GO:0032259;methylation;0.0363126518239727!GO:0009262;deoxyribonucleotide metabolic process;0.0366499103677673!GO:0005996;monosaccharide metabolic process;0.0375590238374547!GO:0031123;RNA 3'-end processing;0.037605482350576!GO:0019318;hexose metabolic process;0.037605482350576!GO:0008287;protein serine/threonine phosphatase complex;0.0376697184300493!GO:0005784;translocon complex;0.037814764000127!GO:0035035;histone acetyltransferase binding;0.0380363519685018!GO:0009308;amine metabolic process;0.0382848414727194!GO:0032200;telomere organization and biogenesis;0.0385716011548466!GO:0000723;telomere maintenance;0.0385716011548466!GO:0006783;heme biosynthetic process;0.0392279676678457!GO:0008299;isoprenoid biosynthetic process;0.0403787596151012!GO:0006984;ER-nuclear signaling pathway;0.0404259839885714!GO:0040029;regulation of gene expression, epigenetic;0.0407125845346828!GO:0050178;phenylpyruvate tautomerase activity;0.0407983431842252!GO:0051348;negative regulation of transferase activity;0.0408276794854203!GO:0030433;ER-associated protein catabolic process;0.0408276794854203!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0408276794854203!GO:0016835;carbon-oxygen lyase activity;0.0415760383514968!GO:0051320;S phase;0.0417495411955646!GO:0000175;3'-5'-exoribonuclease activity;0.0420087157326621!GO:0009124;nucleoside monophosphate biosynthetic process;0.0436370508159572!GO:0009123;nucleoside monophosphate metabolic process;0.0436370508159572!GO:0040008;regulation of growth;0.0442344553579672!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0442470536312911!GO:0045947;negative regulation of translational initiation;0.0443369975586539!GO:0033559;unsaturated fatty acid metabolic process;0.0456655264143511!GO:0006636;unsaturated fatty acid biosynthetic process;0.0456655264143511!GO:0046983;protein dimerization activity;0.0461520626662316!GO:0006979;response to oxidative stress;0.0461833740742444!GO:0051318;G1 phase;0.0461833740742444!GO:0000781;chromosome, telomeric region;0.0461833740742444!GO:0046479;glycosphingolipid catabolic process;0.0470097433997877!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.047371154263776!GO:0048037;cofactor binding;0.048256841862748!GO:0043241;protein complex disassembly;0.0483697863247412!GO:0000793;condensed chromosome;0.0488173381581082!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0492333395037392!GO:0033170;DNA-protein loading ATPase activity;0.049256467582892!GO:0003689;DNA clamp loader activity;0.049256467582892!GO:0004540;ribonuclease activity;0.049256467582892!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0498258353266748
|sample_id=12641
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|timecourse=Melanocytic_differentiation
|top_motifs=HOX{A6,A7,B6,B7}:2.56578222217;PAX6:2.14961939183;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.05996203256;NR3C1:1.97457264012;ESRRA:1.72823459809;NFE2L1:1.3864946309;TFDP1:1.3535937005;E2F1..5:1.21144097647;SREBF1,2:1.19424407075;POU3F1..4:1.16867051608;XCPE1{core}:1.12254924234;bHLH_family:1.10903685463;PAX8:1.08180688991;EN1,2:1.0535688635;RXR{A,B,G}:1.04264537041;ALX4:1.0227188549;ZNF423:0.966676292599;GFI1:0.943526939435;NR5A1,2:0.859146001534;PBX1:0.83243908499;NFIX:0.735909590872;HOX{A4,D4}:0.735746884761;NKX2-3_NKX2-5:0.666415416403;ELK1,4_GABP{A,B1}:0.662938307732;HES1:0.647914893043;UFEwm:0.621909744415;ZNF143:0.614865585311;PAX1,9:0.551295873074;NKX2-2,8:0.512618737964;EVI1:0.500706436925;CDC5L:0.478498859762;FOXQ1:0.459795255241;NRF1:0.450020633646;NFY{A,B,C}:0.441535645015;PAX5:0.400479220903;SOX{8,9,10}:0.392924030953;TEF:0.364072484554;XBP1:0.289635007321;GTF2A1,2:0.278179542947;ZNF238:0.274319946187;HNF4A_NR2F1,2:0.256708345578;NANOG:0.240685548501;STAT1,3:0.217724273388;ARID5B:0.209056851208;HSF1,2:0.200296117759;PRRX1,2:0.199970485543;ZIC1..3:0.19910593498;TLX1..3_NFIC{dimer}:0.187118240606;YY1:0.175025043463;ONECUT1,2:0.113426898435;TP53:0.107896265457;JUN:0.107119892647;HBP1_HMGB_SSRP1_UBTF:0.102758196918;BREu{core}:0.10172025708;ESR1:0.0866567635895;OCT4_SOX2{dimer}:0.0766190190503;AR:0.0501170408738;SOX5:0.0484390944931;SP1:0.0471700490467;CREB1:0.0411039568688;REST:0.0363390529456;FOXL1:0.0346849543012;LEF1_TCF7_TCF7L1,2:0.0286664136535;LHX3,4:0.0275828095398;KLF4:0.0253877517929;TOPORS:0.0238455458432;NKX3-1:0.0225324228441;ZBTB6:0.0143432529175;MYB:-0.00827094699405;BACH2:-0.0125744848081;GTF2I:-0.0168148483411;STAT5{A,B}:-0.027521677885;TAL1_TCF{3,4,12}:-0.0317087664323;HIC1:-0.0404501521195;FOXM1:-0.0528874173498;VSX1,2:-0.0569197912228;PPARG:-0.071038882939;TEAD1:-0.0713210353698;FOX{F1,F2,J1}:-0.0733879379393;ZFP161:-0.0750807072917;HOX{A5,B5}:-0.0767997689985;PAX4:-0.0895999220667;RORA:-0.0966075572666;TFAP2B:-0.0976409097755;IKZF1:-0.097879065097;RFX2..5_RFXANK_RFXAP:-0.101149139988;EBF1:-0.104326605644;ZBTB16:-0.109661770257;TFCP2:-0.122878586349;EP300:-0.131327049465;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.149370051882;POU6F1:-0.152022261743;HNF1A:-0.162782752836;CUX2:-0.16607573637;ATF4:-0.170911472426;GFI1B:-0.171913063311;FOSL2:-0.173771030458;POU2F1..3:-0.180109497575;ELF1,2,4:-0.18936057347;SOX17:-0.194708022431;RUNX1..3:-0.195240324111;NHLH1,2:-0.198002870833;POU1F1:-0.202036115747;NKX3-2:-0.20707920102;FOS_FOS{B,L1}_JUN{B,D}:-0.207528255989;PAX2:-0.210685713838;SMAD1..7,9:-0.211417077761;ADNP_IRX_SIX_ZHX:-0.231395341525;FOXA2:-0.247535890869;AHR_ARNT_ARNT2:-0.250233967218;RFX1:-0.255623584671;NFIL3:-0.266101085728;MEF2{A,B,C,D}:-0.279414795339;MTF1:-0.279619987836;SOX2:-0.283867889073;CRX:-0.289367517137;DMAP1_NCOR{1,2}_SMARC:-0.292837677481;NR6A1:-0.295142977908;RXRA_VDR{dimer}:-0.300131921004;ZNF148:-0.308236345049;GCM1,2:-0.313434892153;HAND1,2:-0.314725617146;NFE2:-0.320343407002;SPZ1:-0.320872138547;ZNF384:-0.322253538245;SPIB:-0.324325915143;MYBL2:-0.327387283873;NFE2L2:-0.332880125418;LMO2:-0.333005326057;SPI1:-0.336559266803;PRDM1:-0.351208910513;ALX1:-0.357393146495;HMX1:-0.364311643506;FOXP3:-0.388183996867;IKZF2:-0.395493043537;NR1H4:-0.409182346121;RBPJ:-0.424151272064;ATF5_CREB3:-0.432684870532;FOXD3:-0.441110112743;GLI1..3:-0.443186069124;HMGA1,2:-0.445186781575;HLF:-0.483628309764;NKX2-1,4:-0.485184769753;NFKB1_REL_RELA:-0.504858805941;GATA6:-0.51722890684;GATA4:-0.517816303471;ETS1,2:-0.518073314732;GZF1:-0.522755616316;SNAI1..3:-0.539021391601;T:-0.565153847972;EGR1..3:-0.570167156561;HOXA9_MEIS1:-0.570449383508;IRF7:-0.586388184954;MYOD1:-0.586768647557;BPTF:-0.594069197015;HIF1A:-0.59877976764;CEBPA,B_DDIT3:-0.60187580973;TFAP2{A,C}:-0.604264594508;MAZ:-0.613912460743;NFATC1..3:-0.619537689179;MED-1{core}:-0.622411146246;FOX{I1,J2}:-0.625579654322;SRF:-0.631488695657;ZEB1:-0.644507383929;TBP:-0.654531170949;NANOG{mouse}:-0.658293957525;MAFB:-0.674378823665;IRF1,2:-0.680471760949;FOX{D1,D2}:-0.682229795368;TFAP4:-0.683351269704;PAX3,7:-0.687785035376;RREB1:-0.690249396809;AIRE:-0.704071414944;TBX4,5:-0.710008477594;NKX6-1,2:-0.719804906529;STAT2,4,6:-0.720855686955;MTE{core}:-0.724523489172;FOXO1,3,4:-0.729248771673;PITX1..3:-0.774305243968;ATF2:-0.776593167776;CDX1,2,4:-0.784571811923;DBP:-0.794525402908;TGIF1:-0.79568445866;FOXP1:-0.860382199467;ATF6:-0.914866306225;MYFfamily:-0.951991327759;MZF1:-0.996218623853;PDX1:-1.11701586261;PATZ1:-1.16035173883;TLX2:-1.3349499084;FOXN1:-1.35844366919;POU5F1:-1.46672703371
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12641-134G4;search_select_hide=table117:FF:12641-134G4
}}
}}

Latest revision as of 18:41, 4 June 2020

Name:Melanocyte, donor1 (MC+1)
Species:Human (Homo sapiens)
Library ID:CNhs12816
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexmale
ageNA
cell typemelanocyte
cell lineNA
companyNA
collaborationSusan Zabierowski (Wistar Institute)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005797
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12816 CAGE DRX008594 DRR009466
Accession ID Hg19

Library idBAMCTSS
CNhs12816 DRZ000891 DRZ002276
Accession ID Hg38

Library idBAMCTSS
CNhs12816 DRZ012241 DRZ013626
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis3.910772e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.37
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.117
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0266
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.155
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.209
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.132
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0834
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.238
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.41
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0812
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.00596
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.209
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.594
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0812
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0898
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.261
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.583
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12816

Jaspar motifP-value
MA0002.20.271
MA0003.10.958
MA0004.16.35896e-5
MA0006.10.174
MA0007.10.0359
MA0009.10.282
MA0014.10.302
MA0017.10.833
MA0018.20.708
MA0019.10.174
MA0024.11.87424e-10
MA0025.10.146
MA0027.10.883
MA0028.14.77374e-5
MA0029.10.982
MA0030.10.162
MA0031.10.247
MA0035.20.659
MA0038.10.0137
MA0039.20.0617
MA0040.10.973
MA0041.10.622
MA0042.10.628
MA0043.10.00333
MA0046.10.26
MA0047.20.484
MA0048.10.0269
MA0050.14.79486e-7
MA0051.10.00544
MA0052.10.377
MA0055.11.78543e-6
MA0057.10.0892
MA0058.18.05319e-8
MA0059.14.23202e-5
MA0060.11.22961e-6
MA0061.12.44718e-5
MA0062.22.14772e-4
MA0065.20.375
MA0066.10.225
MA0067.10.0109
MA0068.10.0498
MA0069.10.134
MA0070.10.00158
MA0071.10.633
MA0072.10.681
MA0073.10.613
MA0074.10.188
MA0076.10.001
MA0077.10.395
MA0078.10.591
MA0079.20.597
MA0080.25.08774e-5
MA0081.10.379
MA0083.10.0154
MA0084.10.417
MA0087.10.489
MA0088.10.00397
MA0090.10.553
MA0091.10.922
MA0092.10.72
MA0093.11.86456e-5
MA0099.28.86057e-4
MA0100.10.758
MA0101.10.00594
MA0102.22.75215e-6
MA0103.10.0773
MA0104.22.53429e-5
MA0105.10.00267
MA0106.10.119
MA0107.13.52916e-4
MA0108.20.00474
MA0111.10.869
MA0112.20.857
MA0113.10.861
MA0114.10.334
MA0115.10.856
MA0116.10.459
MA0117.10.178
MA0119.10.91
MA0122.10.721
MA0124.10.151
MA0125.10.0565
MA0131.10.861
MA0135.10.0774
MA0136.17.87767e-4
MA0137.20.115
MA0138.20.559
MA0139.10.85
MA0140.10.609
MA0141.10.0215
MA0142.10.599
MA0143.10.953
MA0144.10.282
MA0145.10.201
MA0146.10.32
MA0147.11.14017e-4
MA0148.10.626
MA0149.10.0426
MA0150.10.00118
MA0152.10.827
MA0153.10.652
MA0154.10.274
MA0155.10.99
MA0156.10.397
MA0157.10.392
MA0159.10.216
MA0160.10.613
MA0162.10.413
MA0163.10.884
MA0164.10.842
MA0258.10.924
MA0259.10.00252



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12816

Novel motifP-value
10.63
100.559
1000.105
1010.131
1020.188
1030.0407
1040.508
1050.0599
1060.00513
1070.0573
1080.775
1090.0387
110.872
1100.0428
1110.849
1120.851
1130.003
1140.233
1150.944
1160.687
1170.463
1180.172
1190.548
120.351
1200.215
1210.805
1220.821
1230.279
1240.711
1250.578
1260.598
1270.627
1280.316
1290.32
130.08
1300.364
1310.0262
1320.499
1330.555
1340.875
1350.736
1360.00259
1370.81
1380.948
1390.0068
140.456
1400.349
1410.4
1420.911
1430.578
1440.558
1450.597
1460.224
1470.428
1480.163
1490.228
150.881
1500.867
1510.568
1520.394
1530.137
1540.143
1550.828
1560.943
1570.68
1580.11
1590.371
160.462
1600.318
1610.934
1620.606
1630.478
1640.883
1650.263
1660.15
1670.946
1680.748
1690.825
170.82
180.403
190.613
20.465
200.259
210.558
220.541
230.133
240.919
250.438
260.582
270.368
280.412
290.0127
30.683
300.142
310.806
320.283
330.455
340.465
350.251
360.863
370.523
380.608
390.766
40.387
400.0909
410.989
420.147
430.693
440.0558
450.0753
460.706
470.778
480.497
490.45
50.45
500.804
510.876
520.149
530.0926
540.875
550.213
560.522
570.242
580.051
590.599
60.38
600.0975
610.775
620.033
630.936
640.751
650.865
660.037
670.228
680.384
690.936
70.634
700.341
710.971
720.251
730.398
740.556
750.614
760.0777
770.574
780.254
790.86
80.616
800.346
810.483
820.367
830.888
840.368
850.341
860.244
870.0127
880.668
890.425
90.519
900.224
910.255
920.012
930.0542
940.805
955.34884e-6
960.439
970.598
980.175
990.0804



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12816


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000730 (human melanocyte (MC) sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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