FF:11663-122F7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005001 | |||
|accession_numbers=CAGE;DRX008337;DRR009209;DRZ000634;DRZ002019;DRZ011984;DRZ013369 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002566 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000089 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520dark%252c%2520donor3.CNhs12570.11663-122F7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520dark%252c%2520donor3.CNhs12570.11663-122F7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520dark%252c%2520donor3.CNhs12570.11663-122F7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520dark%252c%2520donor3.CNhs12570.11663-122F7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520dark%252c%2520donor3.CNhs12570.11663-122F7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11663-122F7 | |id=FF:11663-122F7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000089 | ||
|is_obsolete= | |||
|library_id=CNhs12570 | |||
|library_id_phase_based=2:CNhs12570 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11663 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11663 | |||
|name=Melanocyte - dark, donor3 | |name=Melanocyte - dark, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12570,LSID917,release011,COMPLETED | |profile_hcage=CNhs12570,LSID917,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.000604915552900515,0,-0.199106202958391,-0.269035243405005,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.077595915100728,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.0757270952476996,0,-0.238171921456212,0,0,0,0,0,0,0,0,-0.0108467039408967,0,0,0,0.0267366343438753,0,0.0215307649462602,0.0519222931552455,-0.0969923612426051,0,0,-0.0216165319653973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0519222931552455,0,0,0,-0.00903714809620298,0.0133683171719376,0,0,0,0,0,-0.0915077155005357,0,0,0,0.122457426045107,-0.0730848125814275,0,0.0267366343438753,0,0,-0.0223082559900068,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691336509319065,0.0267366343438753,0,0,-0.167716906896504,-0.584767027188105,0,0,0,0,0,0 | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC2205-3 | |rna_catalog_number=SC2205-3 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.05528543447261e-282!GO:0043226;organelle;5.27184787274432e-234!GO:0043229;intracellular organelle;1.40396120586747e-233!GO:0043231;intracellular membrane-bound organelle;1.31234410769252e-232!GO:0043227;membrane-bound organelle;1.61366172073335e-232!GO:0005737;cytoplasm;2.59657990177243e-212!GO:0044422;organelle part;7.9025159092028e-178!GO:0044446;intracellular organelle part;2.61429540255303e-176!GO:0044444;cytoplasmic part;7.10537768896996e-158!GO:0032991;macromolecular complex;2.96115391933148e-107!GO:0044237;cellular metabolic process;1.14125910963433e-102!GO:0044238;primary metabolic process;2.16350099892753e-99!GO:0043170;macromolecule metabolic process;7.77996372915951e-89!GO:0005634;nucleus;2.13064634309506e-88!GO:0030529;ribonucleoprotein complex;3.18431358133171e-85!GO:0044428;nuclear part;4.72020754656052e-79!GO:0005739;mitochondrion;9.55240988325584e-78!GO:0043233;organelle lumen;5.26273521446452e-77!GO:0031974;membrane-enclosed lumen;5.26273521446452e-77!GO:0003723;RNA binding;3.43611129418218e-67!GO:0031090;organelle membrane;1.00808247294106e-64!GO:0005515;protein binding;1.73603939633763e-64!GO:0043234;protein complex;1.26385021493798e-56!GO:0044429;mitochondrial part;1.06284619819122e-53!GO:0043283;biopolymer metabolic process;2.31197416484009e-53!GO:0016043;cellular component organization and biogenesis;1.82398027170524e-51!GO:0015031;protein transport;1.01681196393547e-50!GO:0033036;macromolecule localization;1.48927402926796e-50!GO:0005840;ribosome;2.99235998588395e-50!GO:0031967;organelle envelope;3.89199537008697e-50!GO:0031975;envelope;8.83857951197383e-50!GO:0006412;translation;5.23757201354117e-48!GO:0006396;RNA processing;5.70791628834537e-48!GO:0019538;protein metabolic process;8.74988438259156e-48!GO:0008104;protein localization;9.07623693678588e-47!GO:0045184;establishment of protein localization;1.66019506940658e-46!GO:0009058;biosynthetic process;4.03304853579535e-45!GO:0031981;nuclear lumen;1.45796332865853e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.0188441350432e-44!GO:0006996;organelle organization and biogenesis;7.04765684807308e-44!GO:0003735;structural constituent of ribosome;7.39787016842321e-44!GO:0006259;DNA metabolic process;9.78378417230914e-44!GO:0044260;cellular macromolecule metabolic process;1.6080766931605e-43!GO:0044267;cellular protein metabolic process;5.03624364237071e-43!GO:0043228;non-membrane-bound organelle;1.36160536256864e-41!GO:0043232;intracellular non-membrane-bound organelle;1.36160536256864e-41!GO:0009059;macromolecule biosynthetic process;2.2844007770772e-39!GO:0044249;cellular biosynthetic process;2.668665379423e-39!GO:0046907;intracellular transport;3.65774484605667e-38!GO:0005829;cytosol;3.78892153669877e-38!GO:0016071;mRNA metabolic process;5.35747952379321e-38!GO:0033279;ribosomal subunit;5.52030155440364e-38!GO:0010467;gene expression;1.52139233832065e-37!GO:0065003;macromolecular complex assembly;7.12041010101553e-36!GO:0048770;pigment granule;7.30419566973135e-36!GO:0042470;melanosome;7.30419566973135e-36!GO:0008380;RNA splicing;1.58973044800043e-35!GO:0005740;mitochondrial envelope;1.58973044800043e-35!GO:0031966;mitochondrial membrane;3.69385694219833e-33!GO:0006397;mRNA processing;7.51613609329506e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.10998999294338e-33!GO:0019866;organelle inner membrane;1.5497455836115e-32!GO:0007049;cell cycle;2.01508314499342e-32!GO:0022607;cellular component assembly;6.87283327486209e-32!GO:0006886;intracellular protein transport;2.36617882134059e-31!GO:0005743;mitochondrial inner membrane;2.29062768315176e-30!GO:0000166;nucleotide binding;2.38199697517763e-28!GO:0012505;endomembrane system;2.0255095495083e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.25855920769451e-27!GO:0016462;pyrophosphatase activity;3.80054588063365e-27!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.39529189290987e-27!GO:0016817;hydrolase activity, acting on acid anhydrides;4.90102317164895e-27!GO:0005654;nucleoplasm;8.36656818025752e-27!GO:0051649;establishment of cellular localization;1.23969940789529e-26!GO:0003676;nucleic acid binding;1.73062539482977e-26!GO:0005694;chromosome;2.25923887031761e-26!GO:0051641;cellular localization;2.7063888379974e-26!GO:0006974;response to DNA damage stimulus;3.49072204939295e-26!GO:0017111;nucleoside-triphosphatase activity;7.24198249125808e-26!GO:0006119;oxidative phosphorylation;1.78553851587858e-25!GO:0005681;spliceosome;1.78553851587858e-25!GO:0044427;chromosomal part;3.38274051236091e-24!GO:0022402;cell cycle process;1.00328728854273e-23!GO:0044445;cytosolic part;3.68746482369697e-23!GO:0000278;mitotic cell cycle;1.16397277334502e-22!GO:0031980;mitochondrial lumen;1.47957883575934e-22!GO:0005759;mitochondrial matrix;1.47957883575934e-22!GO:0006281;DNA repair;1.47957883575934e-22!GO:0044455;mitochondrial membrane part;7.22886917737535e-22!GO:0032553;ribonucleotide binding;1.39754587321598e-21!GO:0032555;purine ribonucleotide binding;1.39754587321598e-21!GO:0044451;nucleoplasm part;2.99406052055366e-21!GO:0017076;purine nucleotide binding;3.41729360076881e-21!GO:0006457;protein folding;3.75285247844883e-20!GO:0051276;chromosome organization and biogenesis;3.82869037620666e-20!GO:0022618;protein-RNA complex assembly;4.33769876914612e-20!GO:0015935;small ribosomal subunit;4.64419275321571e-20!GO:0022403;cell cycle phase;1.04879266143221e-19!GO:0051301;cell division;1.90391662390255e-19!GO:0016874;ligase activity;1.98993312376313e-19!GO:0005783;endoplasmic reticulum;5.30448682462005e-19!GO:0015934;large ribosomal subunit;6.57799798976053e-19!GO:0006260;DNA replication;1.00584355962469e-18!GO:0006512;ubiquitin cycle;2.29525288093934e-18!GO:0000087;M phase of mitotic cell cycle;2.29525288093934e-18!GO:0005524;ATP binding;3.41245006219247e-18!GO:0051186;cofactor metabolic process;3.44048672720304e-18!GO:0007067;mitosis;5.02125697436867e-18!GO:0005746;mitochondrial respiratory chain;5.86236146509149e-18!GO:0009719;response to endogenous stimulus;1.04636572659241e-17!GO:0032559;adenyl ribonucleotide binding;1.10026530810371e-17!GO:0044265;cellular macromolecule catabolic process;1.59115038418703e-17!GO:0005730;nucleolus;2.18706384206257e-17!GO:0043285;biopolymer catabolic process;2.23101573960038e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.92227983343507e-17!GO:0030554;adenyl nucleotide binding;4.04949120083816e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.87878997338565e-17!GO:0000279;M phase;4.88930037500741e-17!GO:0006511;ubiquitin-dependent protein catabolic process;9.30331324705934e-17!GO:0019941;modification-dependent protein catabolic process;9.57041877677201e-17!GO:0043632;modification-dependent macromolecule catabolic process;9.57041877677201e-17!GO:0016070;RNA metabolic process;1.03159495655393e-16!GO:0009057;macromolecule catabolic process;1.43719765430578e-16!GO:0044432;endoplasmic reticulum part;1.48361390003843e-16!GO:0044257;cellular protein catabolic process;1.49958578017308e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.05141292975243e-16!GO:0005794;Golgi apparatus;3.86492328764614e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.91451812914012e-16!GO:0003954;NADH dehydrogenase activity;4.91451812914012e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.91451812914012e-16!GO:0030163;protein catabolic process;6.22093325321044e-16!GO:0044248;cellular catabolic process;1.0013659054491e-15!GO:0008135;translation factor activity, nucleic acid binding;1.3152367632808e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;1.34301043069717e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.98088718680132e-15!GO:0005635;nuclear envelope;2.20825871734444e-15!GO:0008134;transcription factor binding;3.73452550931502e-15!GO:0042623;ATPase activity, coupled;5.05885215241926e-15!GO:0006323;DNA packaging;6.19394244703342e-15!GO:0005761;mitochondrial ribosome;8.04809672920551e-15!GO:0000313;organellar ribosome;8.04809672920551e-15!GO:0016887;ATPase activity;8.13786871747629e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.17781625478426e-15!GO:0043412;biopolymer modification;1.66880253103736e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.67863186351348e-14!GO:0042773;ATP synthesis coupled electron transport;1.67863186351348e-14!GO:0006732;coenzyme metabolic process;2.79256171149961e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.37349275293971e-14!GO:0045271;respiratory chain complex I;3.37349275293971e-14!GO:0005747;mitochondrial respiratory chain complex I;3.37349275293971e-14!GO:0006605;protein targeting;3.44705566065629e-14!GO:0031965;nuclear membrane;3.77508740798249e-14!GO:0051082;unfolded protein binding;4.60573945979673e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.79087993433777e-14!GO:0042254;ribosome biogenesis and assembly;1.17402804280483e-13!GO:0006333;chromatin assembly or disassembly;1.50921765729374e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.70371271544023e-13!GO:0006413;translational initiation;2.23498492146605e-13!GO:0044453;nuclear membrane part;3.2977500078466e-13!GO:0000785;chromatin;3.84818340871313e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.72049538449052e-13!GO:0000375;RNA splicing, via transesterification reactions;4.72049538449052e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.72049538449052e-13!GO:0006464;protein modification process;8.08920564010769e-13!GO:0065004;protein-DNA complex assembly;1.07716020441396e-12!GO:0003743;translation initiation factor activity;1.3100239701998e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.45580120355317e-12!GO:0031988;membrane-bound vesicle;1.68736607689344e-12!GO:0009259;ribonucleotide metabolic process;1.90438700018869e-12!GO:0005789;endoplasmic reticulum membrane;2.3389730776932e-12!GO:0015630;microtubule cytoskeleton;2.5223340219403e-12!GO:0016023;cytoplasmic membrane-bound vesicle;2.7945775380358e-12!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.07215434560751e-12!GO:0006163;purine nucleotide metabolic process;3.07215434560751e-12!GO:0031982;vesicle;4.2332271043813e-12!GO:0048193;Golgi vesicle transport;4.48837968351259e-12!GO:0008565;protein transporter activity;5.64655859407569e-12!GO:0031410;cytoplasmic vesicle;8.07492150075672e-12!GO:0051726;regulation of cell cycle;9.12928612322444e-12!GO:0016192;vesicle-mediated transport;1.17112661294519e-11!GO:0016604;nuclear body;1.37399376907587e-11!GO:0009150;purine ribonucleotide metabolic process;1.63629781725868e-11!GO:0004386;helicase activity;2.12135510042834e-11!GO:0000074;regulation of progression through cell cycle;2.26939874689256e-11!GO:0006334;nucleosome assembly;2.27312909335402e-11!GO:0031497;chromatin assembly;5.068127624468e-11!GO:0005643;nuclear pore;5.08310123758768e-11!GO:0006164;purine nucleotide biosynthetic process;5.32190061875827e-11!GO:0009199;ribonucleoside triphosphate metabolic process;5.50135306997406e-11!GO:0006446;regulation of translational initiation;5.75784612937409e-11!GO:0009141;nucleoside triphosphate metabolic process;5.86918921822519e-11!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.3697464126837e-11!GO:0005768;endosome;9.76444075314583e-11!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.08496892401082e-10!GO:0009144;purine nucleoside triphosphate metabolic process;1.08496892401082e-10!GO:0009260;ribonucleotide biosynthetic process;1.14759981043007e-10!GO:0006399;tRNA metabolic process;1.19869592219889e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.79293904103199e-10!GO:0008639;small protein conjugating enzyme activity;2.17365240630644e-10!GO:0005773;vacuole;2.71623100032119e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.80057156105948e-10!GO:0043687;post-translational protein modification;3.09249392404967e-10!GO:0015986;ATP synthesis coupled proton transport;3.22112267764522e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.22112267764522e-10!GO:0019787;small conjugating protein ligase activity;3.89829047864164e-10!GO:0046034;ATP metabolic process;4.00957008065876e-10!GO:0016787;hydrolase activity;4.03060194472486e-10!GO:0004842;ubiquitin-protein ligase activity;5.25984775220415e-10!GO:0065002;intracellular protein transport across a membrane;6.30099722563001e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.80402074340558e-10!GO:0050657;nucleic acid transport;6.85504423463469e-10!GO:0051236;establishment of RNA localization;6.85504423463469e-10!GO:0050658;RNA transport;6.85504423463469e-10!GO:0009056;catabolic process;7.32458282776493e-10!GO:0051188;cofactor biosynthetic process;7.32458282776493e-10!GO:0045333;cellular respiration;8.10941203970086e-10!GO:0009060;aerobic respiration;8.29700895534967e-10!GO:0006403;RNA localization;8.49461271397004e-10!GO:0016881;acid-amino acid ligase activity;1.28846034934892e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.42210654640385e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.42210654640385e-09!GO:0009055;electron carrier activity;2.05481004656947e-09!GO:0006364;rRNA processing;2.17208018252665e-09!GO:0016469;proton-transporting two-sector ATPase complex;2.33929091953277e-09!GO:0003697;single-stranded DNA binding;2.37199284803728e-09!GO:0006261;DNA-dependent DNA replication;2.70204678492946e-09!GO:0003712;transcription cofactor activity;2.72540661009849e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.7999646403307e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.7999646403307e-09!GO:0008026;ATP-dependent helicase activity;3.08648734888191e-09!GO:0043566;structure-specific DNA binding;3.23316724520382e-09!GO:0000775;chromosome, pericentric region;3.7038390218111e-09!GO:0016607;nuclear speck;4.13009780633468e-09!GO:0019829;cation-transporting ATPase activity;4.13135812366701e-09!GO:0006461;protein complex assembly;5.03692573579093e-09!GO:0046930;pore complex;5.49101045066592e-09!GO:0006913;nucleocytoplasmic transport;5.5442658232526e-09!GO:0000323;lytic vacuole;5.63666972375863e-09!GO:0005764;lysosome;5.63666972375863e-09!GO:0015078;hydrogen ion transmembrane transporter activity;5.94071706759794e-09!GO:0016740;transferase activity;6.28629232285793e-09!GO:0009117;nucleotide metabolic process;6.41209775343375e-09!GO:0016072;rRNA metabolic process;6.78286791240096e-09!GO:0006754;ATP biosynthetic process;9.20196773179612e-09!GO:0006753;nucleoside phosphate metabolic process;9.20196773179612e-09!GO:0006099;tricarboxylic acid cycle;1.02498767037486e-08!GO:0046356;acetyl-CoA catabolic process;1.02498767037486e-08!GO:0051169;nuclear transport;1.10326603393269e-08!GO:0008654;phospholipid biosynthetic process;1.2936791952588e-08!GO:0006084;acetyl-CoA metabolic process;1.97303764015175e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.20832728857402e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.20832728857402e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.20832728857402e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.57863070186951e-08!GO:0003924;GTPase activity;2.6291082836751e-08!GO:0043038;amino acid activation;3.01618696353572e-08!GO:0006418;tRNA aminoacylation for protein translation;3.01618696353572e-08!GO:0043039;tRNA aminoacylation;3.01618696353572e-08!GO:0005819;spindle;3.17934386428313e-08!GO:0044431;Golgi apparatus part;4.0230479978425e-08!GO:0007005;mitochondrion organization and biogenesis;4.13537391585922e-08!GO:0016568;chromatin modification;4.14274932912747e-08!GO:0051028;mRNA transport;4.34344251554955e-08!GO:0009109;coenzyme catabolic process;6.25861717528311e-08!GO:0005793;ER-Golgi intermediate compartment;7.50344991776615e-08!GO:0009108;coenzyme biosynthetic process;8.06772222051516e-08!GO:0006752;group transfer coenzyme metabolic process;8.07929097869226e-08!GO:0005770;late endosome;1.03304491871304e-07!GO:0051187;cofactor catabolic process;1.11433266598533e-07!GO:0016779;nucleotidyltransferase activity;1.1611477736325e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.6883469743579e-07!GO:0005657;replication fork;1.78074115074561e-07!GO:0044440;endosomal part;1.86984280772833e-07!GO:0010008;endosome membrane;1.86984280772833e-07!GO:0048475;coated membrane;3.21647011407902e-07!GO:0030117;membrane coat;3.21647011407902e-07!GO:0005813;centrosome;3.55046079458393e-07!GO:0005815;microtubule organizing center;3.77586455233237e-07!GO:0012501;programmed cell death;4.15928158514338e-07!GO:0006915;apoptosis;4.53205021809813e-07!GO:0032446;protein modification by small protein conjugation;4.55231942501947e-07!GO:0005798;Golgi-associated vesicle;4.63132059713174e-07!GO:0030120;vesicle coat;5.19467651323085e-07!GO:0030662;coated vesicle membrane;5.19467651323085e-07!GO:0008094;DNA-dependent ATPase activity;5.64474504228408e-07!GO:0046474;glycerophospholipid biosynthetic process;5.68987940371105e-07!GO:0000786;nucleosome;5.81695906372839e-07!GO:0016567;protein ubiquitination;7.03064945034836e-07!GO:0045259;proton-transporting ATP synthase complex;8.52758191004248e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.88542753809692e-07!GO:0006888;ER to Golgi vesicle-mediated transport;9.88542753809692e-07!GO:0005525;GTP binding;1.04326462007288e-06!GO:0000245;spliceosome assembly;1.05038237184869e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.41375191460499e-06!GO:0016853;isomerase activity;1.46689428269345e-06!GO:0017038;protein import;1.70951751658583e-06!GO:0007051;spindle organization and biogenesis;1.72594458702401e-06!GO:0000075;cell cycle checkpoint;1.87766213331243e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.91487129216567e-06!GO:0006366;transcription from RNA polymerase II promoter;2.06293929078136e-06!GO:0043623;cellular protein complex assembly;2.10620616669714e-06!GO:0051329;interphase of mitotic cell cycle;2.26447805259899e-06!GO:0046467;membrane lipid biosynthetic process;2.93025139290605e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.48111220009907e-06!GO:0051325;interphase;3.52014937525842e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.60731038875149e-06!GO:0051246;regulation of protein metabolic process;3.82945001428436e-06!GO:0016491;oxidoreductase activity;4.28752667016881e-06!GO:0008219;cell death;4.48722693224868e-06!GO:0016265;death;4.48722693224868e-06!GO:0006650;glycerophospholipid metabolic process;4.59098426873986e-06!GO:0006302;double-strand break repair;4.86317531632021e-06!GO:0000151;ubiquitin ligase complex;6.12713866879167e-06!GO:0005667;transcription factor complex;6.8366633620945e-06!GO:0004298;threonine endopeptidase activity;6.8366633620945e-06!GO:0006613;cotranslational protein targeting to membrane;6.8366633620945e-06!GO:0000139;Golgi membrane;6.8366633620945e-06!GO:0006793;phosphorus metabolic process;6.9973019611916e-06!GO:0006796;phosphate metabolic process;6.9973019611916e-06!GO:0005769;early endosome;7.08300823365444e-06!GO:0030659;cytoplasmic vesicle membrane;7.21185752975974e-06!GO:0005788;endoplasmic reticulum lumen;8.92542486785073e-06!GO:0031252;leading edge;9.30436196842068e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.61337513656316e-06!GO:0003899;DNA-directed RNA polymerase activity;1.06178873635637e-05!GO:0046148;pigment biosynthetic process;1.16024813314907e-05!GO:0046489;phosphoinositide biosynthetic process;1.17833387341648e-05!GO:0042440;pigment metabolic process;1.21692765818509e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.24355376375838e-05!GO:0015631;tubulin binding;1.2504733860395e-05!GO:0016859;cis-trans isomerase activity;1.25902455770462e-05!GO:0006310;DNA recombination;1.39765832207179e-05!GO:0006916;anti-apoptosis;1.54426599203806e-05!GO:0032561;guanyl ribonucleotide binding;1.56545791953767e-05!GO:0019001;guanyl nucleotide binding;1.56545791953767e-05!GO:0007059;chromosome segregation;1.92018877227043e-05!GO:0006643;membrane lipid metabolic process;2.08609057804596e-05!GO:0048471;perinuclear region of cytoplasm;2.22881245288923e-05!GO:0012506;vesicle membrane;2.31444120674228e-05!GO:0006612;protein targeting to membrane;2.41875515875019e-05!GO:0016363;nuclear matrix;2.5552823491217e-05!GO:0044433;cytoplasmic vesicle part;2.62646217477473e-05!GO:0000776;kinetochore;2.82878985739284e-05!GO:0005874;microtubule;2.89841383799332e-05!GO:0048066;pigmentation during development;3.33644744087113e-05!GO:0003690;double-stranded DNA binding;3.33644744087113e-05!GO:0005762;mitochondrial large ribosomal subunit;3.45118447115905e-05!GO:0000315;organellar large ribosomal subunit;3.45118447115905e-05!GO:0003713;transcription coactivator activity;3.83346654901193e-05!GO:0003724;RNA helicase activity;3.89324154540577e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.10237003520131e-05!GO:0015399;primary active transmembrane transporter activity;4.10237003520131e-05!GO:0003682;chromatin binding;4.93035415119104e-05!GO:0051427;hormone receptor binding;4.9488532562553e-05!GO:0016310;phosphorylation;5.1917979850871e-05!GO:0007010;cytoskeleton organization and biogenesis;5.41564242604207e-05!GO:0050794;regulation of cellular process;5.45996145553577e-05!GO:0006091;generation of precursor metabolites and energy;6.11063663007205e-05!GO:0051168;nuclear export;6.16590189493587e-05!GO:0006383;transcription from RNA polymerase III promoter;7.82077772219432e-05!GO:0048523;negative regulation of cellular process;8.03742493975731e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.75980367189922e-05!GO:0043021;ribonucleoprotein binding;9.00369917366986e-05!GO:0009165;nucleotide biosynthetic process;9.16671532145987e-05!GO:0006818;hydrogen transport;9.49174701414997e-05!GO:0000314;organellar small ribosomal subunit;9.5605017522078e-05!GO:0005763;mitochondrial small ribosomal subunit;9.5605017522078e-05!GO:0019899;enzyme binding;9.93793271171426e-05!GO:0030384;phosphoinositide metabolic process;9.99480609461126e-05!GO:0035257;nuclear hormone receptor binding;0.000103057851493207!GO:0045786;negative regulation of progression through cell cycle;0.000113831655188121!GO:0031968;organelle outer membrane;0.000114445133400792!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000117890105092499!GO:0008610;lipid biosynthetic process;0.000122139223432957!GO:0015992;proton transport;0.00012594324781943!GO:0019867;outer membrane;0.000144278858386986!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000150623939092503!GO:0019843;rRNA binding;0.000153293820557455!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000172374095099152!GO:0016126;sterol biosynthetic process;0.000172821103952305!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000179375370436614!GO:0031072;heat shock protein binding;0.000180279271851749!GO:0016563;transcription activator activity;0.000186592873793256!GO:0030133;transport vesicle;0.000202229186197074!GO:0003684;damaged DNA binding;0.000210009975150313!GO:0051052;regulation of DNA metabolic process;0.000215769876062695!GO:0030867;rough endoplasmic reticulum membrane;0.000215769876062695!GO:0031324;negative regulation of cellular metabolic process;0.000225178118193119!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000230940556603596!GO:0007088;regulation of mitosis;0.000234255097629539!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000234255097629539!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000245345590468275!GO:0000059;protein import into nucleus, docking;0.00025071485981605!GO:0005741;mitochondrial outer membrane;0.000281293699768042!GO:0016564;transcription repressor activity;0.000286299015699974!GO:0005885;Arp2/3 protein complex;0.00029072293266849!GO:0031902;late endosome membrane;0.0002973974648131!GO:0007017;microtubule-based process;0.00030270465656255!GO:0051170;nuclear import;0.000304465480296019!GO:0006626;protein targeting to mitochondrion;0.000324941834594098!GO:0005774;vacuolar membrane;0.000335386660118493!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000338371490965023!GO:0045454;cell redox homeostasis;0.000383082491199578!GO:0043069;negative regulation of programmed cell death;0.000389357550257204!GO:0042981;regulation of apoptosis;0.000417385824041674!GO:0003678;DNA helicase activity;0.000434802181946466!GO:0043681;protein import into mitochondrion;0.000439484016666381!GO:0043066;negative regulation of apoptosis;0.00045262091368897!GO:0006506;GPI anchor biosynthetic process;0.000478142427021954!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000480869309820904!GO:0006839;mitochondrial transport;0.000483139354717613!GO:0007052;mitotic spindle organization and biogenesis;0.000489851012351974!GO:0004527;exonuclease activity;0.000505626080046129!GO:0005905;coated pit;0.000508369334767425!GO:0008186;RNA-dependent ATPase activity;0.000511359051634929!GO:0043067;regulation of programmed cell death;0.000517124593405009!GO:0006644;phospholipid metabolic process;0.0005176896128333!GO:0003714;transcription corepressor activity;0.000539979030914345!GO:0044262;cellular carbohydrate metabolic process;0.000545928086878582!GO:0046519;sphingoid metabolic process;0.000545928086878582!GO:0051789;response to protein stimulus;0.000546126171257816!GO:0006986;response to unfolded protein;0.000546126171257816!GO:0042802;identical protein binding;0.000547868428212586!GO:0009892;negative regulation of metabolic process;0.00056392709166331!GO:0004576;oligosaccharyl transferase activity;0.000564890578017355!GO:0004518;nuclease activity;0.000616683178447088!GO:0043492;ATPase activity, coupled to movement of substances;0.000629187973247645!GO:0007093;mitotic cell cycle checkpoint;0.00063942515598055!GO:0006672;ceramide metabolic process;0.000642210723650149!GO:0006606;protein import into nucleus;0.000648683920305168!GO:0006505;GPI anchor metabolic process;0.000649390968183087!GO:0008250;oligosaccharyl transferase complex;0.000649634739988624!GO:0000910;cytokinesis;0.000683354058142393!GO:0042158;lipoprotein biosynthetic process;0.000683758361846107!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000696001118920529!GO:0033162;melanosome membrane;0.000696001118920529!GO:0045009;chitosome;0.000696001118920529!GO:0005791;rough endoplasmic reticulum;0.000733593557920721!GO:0048519;negative regulation of biological process;0.000735010113874539!GO:0044452;nucleolar part;0.000737899911222838!GO:0003729;mRNA binding;0.00076367921256013!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000774927862714108!GO:0008033;tRNA processing;0.000804584366750523!GO:0030880;RNA polymerase complex;0.000808428937265414!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000820117049103157!GO:0019748;secondary metabolic process;0.000841453467426563!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000846847034370201!GO:0006497;protein amino acid lipidation;0.000899141951151473!GO:0051920;peroxiredoxin activity;0.000908611296436029!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000935849877982237!GO:0030118;clathrin coat;0.000995529227737031!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103400495902223!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103400495902223!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103400495902223!GO:0032508;DNA duplex unwinding;0.00103694026495687!GO:0032392;DNA geometric change;0.00103694026495687!GO:0005048;signal sequence binding;0.00104798555901515!GO:0006695;cholesterol biosynthetic process;0.00108527046534625!GO:0048487;beta-tubulin binding;0.00116985496636312!GO:0007006;mitochondrial membrane organization and biogenesis;0.00117620953482478!GO:0035258;steroid hormone receptor binding;0.00118356013410738!GO:0044437;vacuolar part;0.00120073936299313!GO:0004004;ATP-dependent RNA helicase activity;0.00127082938278656!GO:0005876;spindle microtubule;0.00132358923649233!GO:0007034;vacuolar transport;0.00141771185641197!GO:0007264;small GTPase mediated signal transduction;0.00142892212316764!GO:0006268;DNA unwinding during replication;0.00144378233231311!GO:0043596;nuclear replication fork;0.00148056580977284!GO:0030658;transport vesicle membrane;0.00149839411720167!GO:0048500;signal recognition particle;0.00164811162440654!GO:0033116;ER-Golgi intermediate compartment membrane;0.00166484500734048!GO:0051252;regulation of RNA metabolic process;0.00170636107577096!GO:0030027;lamellipodium;0.00170636107577096!GO:0006402;mRNA catabolic process;0.00175546135404624!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0017833542813775!GO:0000428;DNA-directed RNA polymerase complex;0.0017833542813775!GO:0022890;inorganic cation transmembrane transporter activity;0.00181683316073193!GO:0008092;cytoskeletal protein binding;0.00185818847350839!GO:0006270;DNA replication initiation;0.00185923295211281!GO:0007040;lysosome organization and biogenesis;0.00196172109144282!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00200920328648286!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00200920328648286!GO:0043284;biopolymer biosynthetic process;0.00202621918744913!GO:0042393;histone binding;0.0020585506534525!GO:0050662;coenzyme binding;0.00210151113497677!GO:0000228;nuclear chromosome;0.00225519140115594!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00229640765770272!GO:0007033;vacuole organization and biogenesis;0.00238352486331512!GO:0065009;regulation of a molecular function;0.00238506373270397!GO:0016197;endosome transport;0.00238714000239071!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00248463653263589!GO:0019752;carboxylic acid metabolic process;0.00250228034423652!GO:0006414;translational elongation;0.00252785792618633!GO:0006611;protein export from nucleus;0.00256632132530274!GO:0030521;androgen receptor signaling pathway;0.00258693579254128!GO:0018196;peptidyl-asparagine modification;0.00258879307990928!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00258879307990928!GO:0008022;protein C-terminus binding;0.00261730660301795!GO:0031970;organelle envelope lumen;0.00265144234866828!GO:0005684;U2-dependent spliceosome;0.00275961581703026!GO:0006509;membrane protein ectodomain proteolysis;0.00276648855389511!GO:0033619;membrane protein proteolysis;0.00276648855389511!GO:0006082;organic acid metabolic process;0.00277183005126017!GO:0008312;7S RNA binding;0.00284216618243971!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00290411306189783!GO:0006338;chromatin remodeling;0.00292532511067713!GO:0000922;spindle pole;0.00292532511067713!GO:0030663;COPI coated vesicle membrane;0.00295628399024616!GO:0030126;COPI vesicle coat;0.00295628399024616!GO:0005765;lysosomal membrane;0.00296850615688189!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00299238018363818!GO:0045047;protein targeting to ER;0.00299238018363818!GO:0006352;transcription initiation;0.00299856995963408!GO:0030176;integral to endoplasmic reticulum membrane;0.00322193721983044!GO:0000287;magnesium ion binding;0.00323448309626073!GO:0008180;signalosome;0.00324284694665308!GO:0019222;regulation of metabolic process;0.00329043858401083!GO:0006891;intra-Golgi vesicle-mediated transport;0.00331991987344791!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00333651847272711!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00335762775056857!GO:0005637;nuclear inner membrane;0.00341418870447491!GO:0000725;recombinational repair;0.00357402905085539!GO:0000724;double-strand break repair via homologous recombination;0.00357402905085539!GO:0000082;G1/S transition of mitotic cell cycle;0.00371661988817905!GO:0051087;chaperone binding;0.00379711666737782!GO:0030660;Golgi-associated vesicle membrane;0.0039379558631936!GO:0016741;transferase activity, transferring one-carbon groups;0.00397843008717925!GO:0008168;methyltransferase activity;0.00417621270914066!GO:0016251;general RNA polymerase II transcription factor activity;0.00420535620171189!GO:0006405;RNA export from nucleus;0.0042653885535048!GO:0043488;regulation of mRNA stability;0.00445941567227652!GO:0043487;regulation of RNA stability;0.00445941567227652!GO:0046483;heterocycle metabolic process;0.00472045807408848!GO:0043601;nuclear replisome;0.00473885030124045!GO:0030894;replisome;0.00473885030124045!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00522843439754521!GO:0004177;aminopeptidase activity;0.00527595493793658!GO:0031901;early endosome membrane;0.00535263901872234!GO:0008320;protein transmembrane transporter activity;0.00549833874091454!GO:0003711;transcription elongation regulator activity;0.00562908359057648!GO:0048069;eye pigmentation;0.00571962509431829!GO:0030137;COPI-coated vesicle;0.00588933641681468!GO:0016481;negative regulation of transcription;0.00592905217726419!GO:0006401;RNA catabolic process;0.00599752815941075!GO:0045045;secretory pathway;0.00599824514259958!GO:0008017;microtubule binding;0.00604163607964907!GO:0030119;AP-type membrane coat adaptor complex;0.00604427394111291!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00605899128187854!GO:0005758;mitochondrial intermembrane space;0.00613163524041244!GO:0001726;ruffle;0.00613291670678298!GO:0031124;mRNA 3'-end processing;0.00620678395898516!GO:0030145;manganese ion binding;0.00640530027555858!GO:0006275;regulation of DNA replication;0.00640530027555858!GO:0006289;nucleotide-excision repair;0.00651429884686603!GO:0030036;actin cytoskeleton organization and biogenesis;0.0068027993737799!GO:0030496;midbody;0.00683123261949229!GO:0008234;cysteine-type peptidase activity;0.00685038516241908!GO:0019206;nucleoside kinase activity;0.0069078402513586!GO:0005869;dynactin complex;0.00691803750948744!GO:0006520;amino acid metabolic process;0.00700674543335396!GO:0050789;regulation of biological process;0.00700713427188409!GO:0050681;androgen receptor binding;0.00701307113403666!GO:0022406;membrane docking;0.00706224066217286!GO:0048278;vesicle docking;0.00706224066217286!GO:0006220;pyrimidine nucleotide metabolic process;0.00715046884686024!GO:0006007;glucose catabolic process;0.00751639972225504!GO:0004003;ATP-dependent DNA helicase activity;0.0077455732670422!GO:0006284;base-excision repair;0.00791921543468497!GO:0016408;C-acyltransferase activity;0.00808785168345632!GO:0051539;4 iron, 4 sulfur cluster binding;0.00822220546723816!GO:0007243;protein kinase cascade;0.00826426435551759!GO:0004674;protein serine/threonine kinase activity;0.00837179937919245!GO:0030131;clathrin adaptor complex;0.00842300833456627!GO:0003746;translation elongation factor activity;0.00849075499248798!GO:0051540;metal cluster binding;0.00873419120068496!GO:0051536;iron-sulfur cluster binding;0.00873419120068496!GO:0030125;clathrin vesicle coat;0.0094874616894266!GO:0030665;clathrin coated vesicle membrane;0.0094874616894266!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00996757993805506!GO:0006582;melanin metabolic process;0.0101054020589694!GO:0006583;melanin biosynthetic process from tyrosine;0.0101054020589694!GO:0042438;melanin biosynthetic process;0.0101054020589694!GO:0005832;chaperonin-containing T-complex;0.0102605562775363!GO:0000070;mitotic sister chromatid segregation;0.0102945176184293!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.010371600127339!GO:0006904;vesicle docking during exocytosis;0.010371600127339!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0107597443341513!GO:0016584;nucleosome positioning;0.0108803956575667!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0108803956575667!GO:0015002;heme-copper terminal oxidase activity;0.0108803956575667!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0108803956575667!GO:0004129;cytochrome-c oxidase activity;0.0108803956575667!GO:0000819;sister chromatid segregation;0.0109183259443276!GO:0050790;regulation of catalytic activity;0.0109847200952761!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0110754322371837!GO:0051053;negative regulation of DNA metabolic process;0.0111074745474027!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0113790592541305!GO:0006144;purine base metabolic process;0.0113790592541305!GO:0006726;eye pigment biosynthetic process;0.0115317851719443!GO:0042441;eye pigment metabolic process;0.0115317851719443!GO:0007021;tubulin folding;0.0117195217580182!GO:0030132;clathrin coat of coated pit;0.0118933124437647!GO:0032984;macromolecular complex disassembly;0.012290154084171!GO:0006778;porphyrin metabolic process;0.0126118545694681!GO:0033013;tetrapyrrole metabolic process;0.0126118545694681!GO:0007041;lysosomal transport;0.0127282715420611!GO:0030140;trans-Golgi network transport vesicle;0.0128476283957355!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0132245186929165!GO:0051287;NAD binding;0.0133466642781747!GO:0042770;DNA damage response, signal transduction;0.0135553643564427!GO:0000209;protein polyubiquitination;0.0140777397037866!GO:0030518;steroid hormone receptor signaling pathway;0.0141993163862272!GO:0005663;DNA replication factor C complex;0.0142104132530415!GO:0043624;cellular protein complex disassembly;0.0143708985721903!GO:0008139;nuclear localization sequence binding;0.0145177427705886!GO:0008047;enzyme activator activity;0.0147476963395322!GO:0016860;intramolecular oxidoreductase activity;0.0149486103375757!GO:0006779;porphyrin biosynthetic process;0.0151900032335555!GO:0033014;tetrapyrrole biosynthetic process;0.0151900032335555!GO:0048154;S100 beta binding;0.0155646542690137!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0158148087337734!GO:0044454;nuclear chromosome part;0.016075646099628!GO:0000726;non-recombinational repair;0.0160885210737227!GO:0030149;sphingolipid catabolic process;0.0162485221942492!GO:0050931;pigment cell differentiation;0.0163911067940195!GO:0030318;melanocyte differentiation;0.0163911067940195!GO:0008408;3'-5' exonuclease activity;0.0164101276997917!GO:0000049;tRNA binding;0.0165337732888961!GO:0043022;ribosome binding;0.0165964306402961!GO:0031570;DNA integrity checkpoint;0.016845326868762!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0169880056150502!GO:0008361;regulation of cell size;0.0172422043658458!GO:0031301;integral to organelle membrane;0.0177565569850162!GO:0016272;prefoldin complex;0.0178175261946641!GO:0044255;cellular lipid metabolic process;0.0178175261946641!GO:0016044;membrane organization and biogenesis;0.0179111907759473!GO:0004448;isocitrate dehydrogenase activity;0.0179188969169315!GO:0000152;nuclear ubiquitin ligase complex;0.0181366328021154!GO:0000178;exosome (RNase complex);0.0185490755974886!GO:0004523;ribonuclease H activity;0.0187340096446221!GO:0050811;GABA receptor binding;0.018777753778815!GO:0009116;nucleoside metabolic process;0.0190298035046598!GO:0030029;actin filament-based process;0.0194062717864856!GO:0008287;protein serine/threonine phosphatase complex;0.0194085947376691!GO:0004503;monophenol monooxygenase activity;0.0194260707697828!GO:0016716;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen;0.0194260707697828!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0205124457052235!GO:0006376;mRNA splice site selection;0.0206544049398281!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0206544049398281!GO:0006378;mRNA polyadenylation;0.0209258181803362!GO:0032200;telomere organization and biogenesis;0.0210147159210252!GO:0000723;telomere maintenance;0.0210147159210252!GO:0007050;cell cycle arrest;0.0214044121815701!GO:0000339;RNA cap binding;0.0218709883481829!GO:0016407;acetyltransferase activity;0.0219514228212781!GO:0031371;ubiquitin conjugating enzyme complex;0.0220736160853062!GO:0005938;cell cortex;0.0226080791873707!GO:0043241;protein complex disassembly;0.0226819232917762!GO:0031123;RNA 3'-end processing;0.0231947661552196!GO:0005669;transcription factor TFIID complex;0.0232542763645498!GO:0006665;sphingolipid metabolic process;0.0232895133712368!GO:0000118;histone deacetylase complex;0.0232912164862317!GO:0030508;thiol-disulfide exchange intermediate activity;0.0232955240119728!GO:0008632;apoptotic program;0.0237042243610258!GO:0009112;nucleobase metabolic process;0.0238032147233413!GO:0008415;acyltransferase activity;0.023874111457806!GO:0003923;GPI-anchor transamidase activity;0.0240477938529398!GO:0016255;attachment of GPI anchor to protein;0.0240477938529398!GO:0042765;GPI-anchor transamidase complex;0.0240477938529398!GO:0051452;cellular pH reduction;0.0241758770227373!GO:0051453;regulation of cellular pH;0.0241758770227373!GO:0045851;pH reduction;0.0241758770227373!GO:0009262;deoxyribonucleotide metabolic process;0.0248716078959995!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0252089665922702!GO:0010257;NADH dehydrogenase complex assembly;0.0252089665922702!GO:0033108;mitochondrial respiratory chain complex assembly;0.0252089665922702!GO:0016746;transferase activity, transferring acyl groups;0.0253872499436442!GO:0016049;cell growth;0.0257994791156179!GO:0006635;fatty acid beta-oxidation;0.0259811973129588!GO:0004287;prolyl oligopeptidase activity;0.0261227222789327!GO:0043414;biopolymer methylation;0.0262238796001776!GO:0001573;ganglioside metabolic process;0.0266671272595407!GO:0045947;negative regulation of translational initiation;0.0267396331802871!GO:0006740;NADPH regeneration;0.0270979909663324!GO:0006098;pentose-phosphate shunt;0.0270979909663324!GO:0048037;cofactor binding;0.0271718420805108!GO:0004722;protein serine/threonine phosphatase activity;0.0271718420805108!GO:0004532;exoribonuclease activity;0.0271718420805108!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0271718420805108!GO:0001725;stress fiber;0.027443928172996!GO:0032432;actin filament bundle;0.027443928172996!GO:0022411;cellular component disassembly;0.0276764361008322!GO:0008299;isoprenoid biosynthetic process;0.0279282393938218!GO:0000096;sulfur amino acid metabolic process;0.0279293399460907!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.02807701658345!GO:0031529;ruffle organization and biogenesis;0.0280838543189681!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0282446271119749!GO:0006730;one-carbon compound metabolic process;0.0283614864722874!GO:0006595;polyamine metabolic process;0.0285154578603157!GO:0017166;vinculin binding;0.0285241798101246!GO:0000792;heterochromatin;0.0285887672438788!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0285959506551807!GO:0030433;ER-associated protein catabolic process;0.029538490608505!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.029538490608505!GO:0042168;heme metabolic process;0.029538490608505!GO:0022884;macromolecule transmembrane transporter activity;0.0295933082657764!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0295933082657764!GO:0008538;proteasome activator activity;0.029911828289262!GO:0030134;ER to Golgi transport vesicle;0.0303197012318999!GO:0006661;phosphatidylinositol biosynthetic process;0.0304569027598066!GO:0030127;COPII vesicle coat;0.0312562288493176!GO:0012507;ER to Golgi transport vesicle membrane;0.0312562288493176!GO:0046479;glycosphingolipid catabolic process;0.0312562288493176!GO:0009303;rRNA transcription;0.031434202690869!GO:0000793;condensed chromosome;0.0315575196444071!GO:0016301;kinase activity;0.0318831244381396!GO:0032259;methylation;0.0318901041293959!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0319362118289951!GO:0008276;protein methyltransferase activity;0.0321951263553779!GO:0001558;regulation of cell growth;0.0327324423300289!GO:0019783;small conjugating protein-specific protease activity;0.0329062603679558!GO:0030911;TPR domain binding;0.033397610919534!GO:0045792;negative regulation of cell size;0.0334524640355963!GO:0035035;histone acetyltransferase binding;0.0339866674449362!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0343662598364976!GO:0016790;thiolester hydrolase activity;0.0346552344101183!GO:0007346;regulation of progression through mitotic cell cycle;0.0351441291925267!GO:0043154;negative regulation of caspase activity;0.0351576305443647!GO:0019318;hexose metabolic process;0.0353931861538924!GO:0005975;carbohydrate metabolic process;0.0353931861538924!GO:0004843;ubiquitin-specific protease activity;0.0354529345304993!GO:0000781;chromosome, telomeric region;0.0357433627884972!GO:0031577;spindle checkpoint;0.0357587139406587!GO:0006892;post-Golgi vesicle-mediated transport;0.0358396242514739!GO:0006783;heme biosynthetic process;0.0358963568590139!GO:0009003;signal peptidase activity;0.0359666593901805!GO:0005784;translocon complex;0.0360882499340896!GO:0008637;apoptotic mitochondrial changes;0.036138105293429!GO:0042026;protein refolding;0.0364211258686537!GO:0043130;ubiquitin binding;0.0364211258686537!GO:0032182;small conjugating protein binding;0.0364211258686537!GO:0051128;regulation of cellular component organization and biogenesis;0.036505245116781!GO:0000030;mannosyltransferase activity;0.0367130787606551!GO:0043087;regulation of GTPase activity;0.0367147714504276!GO:0030041;actin filament polymerization;0.0367147714504276!GO:0033673;negative regulation of kinase activity;0.0369372017581743!GO:0006469;negative regulation of protein kinase activity;0.0369372017581743!GO:0040029;regulation of gene expression, epigenetic;0.0371949605832655!GO:0016125;sterol metabolic process;0.0374645782665194!GO:0005996;monosaccharide metabolic process;0.0375501494312613!GO:0008536;Ran GTPase binding;0.0380841235325611!GO:0004520;endodeoxyribonuclease activity;0.038657391360266!GO:0019377;glycolipid catabolic process;0.038657391360266!GO:0006984;ER-nuclear signaling pathway;0.038657391360266!GO:0006518;peptide metabolic process;0.0398638185342244!GO:0046983;protein dimerization activity;0.039888755987049!GO:0001711;endodermal cell fate commitment;0.039888755987049!GO:0030858;positive regulation of epithelial cell differentiation;0.039888755987049!GO:0031528;microvillus membrane;0.039888755987049!GO:0001706;endoderm formation;0.039888755987049!GO:0004563;beta-N-acetylhexosaminidase activity;0.039888755987049!GO:0006266;DNA ligation;0.0403619156368073!GO:0008156;negative regulation of DNA replication;0.0404889746404212!GO:0030308;negative regulation of cell growth;0.0404889746404212!GO:0006301;postreplication repair;0.0408400617762752!GO:0016311;dephosphorylation;0.0426771507134939!GO:0017134;fibroblast growth factor binding;0.0428856607317354!GO:0016788;hydrolase activity, acting on ester bonds;0.0428856607317354!GO:0031628;opioid receptor binding;0.0428856607317354!GO:0031852;mu-type opioid receptor binding;0.0428856607317354!GO:0044438;microbody part;0.0430949872594345!GO:0044439;peroxisomal part;0.0430949872594345!GO:0007004;telomere maintenance via telomerase;0.0430949872594345!GO:0033170;DNA-protein loading ATPase activity;0.0446670360975477!GO:0003689;DNA clamp loader activity;0.0446670360975477!GO:0006417;regulation of translation;0.0447759512460543!GO:0016791;phosphoric monoester hydrolase activity;0.0453300828441353!GO:0044450;microtubule organizing center part;0.0453300828441353!GO:0051348;negative regulation of transferase activity;0.0463595996951611!GO:0042585;germinal vesicle;0.0464861093098205!GO:0030522;intracellular receptor-mediated signaling pathway;0.047222077690743!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0473569548359044!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.04736878284001!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0482954766924936!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0490604687621032!GO:0046466;membrane lipid catabolic process;0.0498070193294106 | |||
|sample_id=11663 | |sample_id=11663 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HOX{A6,A7,B6,B7}:2.34017222782;PAX6:2.29928714152;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.2429720306;TFDP1:1.85627074885;SREBF1,2:1.7154909643;NANOG:1.58301434145;EN1,2:1.51396899721;E2F1..5:1.42687360317;PAX8:1.39495855127;NKX2-3_NKX2-5:1.3911088238;ESRRA:1.37703368243;XCPE1{core}:1.20440390928;GFI1:1.19708310417;NR5A1,2:1.18201354628;NFE2L1:1.14946473824;PBX1:1.1120056004;POU3F1..4:1.10984063924;NFY{A,B,C}:1.05093522949;NR3C1:1.03552193166;POU1F1:1.02856256361;LHX3,4:0.949159290941;HOX{A4,D4}:0.860026739911;bHLH_family:0.847215510746;ZNF143:0.839564861584;NRF1:0.807252209638;SOX{8,9,10}:0.793764851659;JUN:0.784097363755;ELK1,4_GABP{A,B1}:0.756835200485;STAT1,3:0.620822489218;CUX2:0.582576198984;BREu{core}:0.564974579756;YY1:0.541521166545;VSX1,2:0.532103525957;CDC5L:0.530437574012;FOXA2:0.52918401659;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.502810394069;PRRX1,2:0.467236243981;NFIX:0.456371893606;HBP1_HMGB_SSRP1_UBTF:0.433584842228;ALX4:0.421938831715;PAX1,9:0.414702632215;FOXQ1:0.413606162896;HAND1,2:0.402462467248;OCT4_SOX2{dimer}:0.392906486317;RFX2..5_RFXANK_RFXAP:0.388393091718;ZNF238:0.380685819285;ARID5B:0.376726391085;CREB1:0.360416521624;NKX3-1:0.359688584282;ALX1:0.32689206588;ZNF423:0.313680635863;TEF:0.312359594372;ADNP_IRX_SIX_ZHX:0.269905247059;SP1:0.264281166643;XBP1:0.246907682946;GTF2A1,2:0.232311393101;PAX5:0.226878211956;MYB:0.216923797751;HNF4A_NR2F1,2:0.213659195875;SOX5:0.206053975404;MYBL2:0.197091172326;NKX6-1,2:0.194900409056;PAX4:0.188964787224;PDX1:0.188721661301;HOX{A5,B5}:0.173149625891;HSF1,2:0.171838483064;ZFP161:0.156769113426;HES1:0.141679229106;ATF4:0.141667236437;FOX{F1,F2,J1}:0.0945066477706;NHLH1,2:0.0847201276496;RFX1:0.0703816567601;GZF1:0.069661670011;FOSL2:0.048769396802;HIC1:0.0373185927439;RXR{A,B,G}:0.0287798852427;ELF1,2,4:0.0234307137682;ZBTB6:0.0213016247314;LEF1_TCF7_TCF7L1,2:0.0087534596752;FOXM1:0.00503134831252;CRX:0.00100206135673;TFAP2B:-0.00941461776622;POU2F1..3:-0.0260448575229;FOXP3:-0.0314894495594;POU6F1:-0.0374655272468;AR:-0.0391747024406;REST:-0.0433164617071;GTF2I:-0.0460543190832;TFCP2:-0.0669813540096;FOX{D1,D2}:-0.068060031044;GFI1B:-0.0684212912244;SOX2:-0.0737380592888;TLX1..3_NFIC{dimer}:-0.0887061635741;NKX3-2:-0.0915540602099;BACH2:-0.0985853354441;ATF5_CREB3:-0.103417122321;EVI1:-0.105909047921;MTF1:-0.109990055225;MEF2{A,B,C,D}:-0.121972852947;EBF1:-0.128828158181;GCM1,2:-0.141830542534;TP53:-0.145465383299;FOXL1:-0.155920325253;RUNX1..3:-0.157118720491;FOX{I1,J2}:-0.158484075842;FOS_FOS{B,L1}_JUN{B,D}:-0.170866046294;IRF7:-0.198876257514;PAX2:-0.202509574193;EP300:-0.203403394697;ONECUT1,2:-0.205154274504;HNF1A:-0.205350497259;BPTF:-0.206326156773;TAL1_TCF{3,4,12}:-0.210616201684;PAX3,7:-0.211462267518;ZNF384:-0.215090240284;TGIF1:-0.227208675963;NFE2L2:-0.238051188099;RORA:-0.263607831766;NFIL3:-0.271748913135;ZIC1..3:-0.287818250186;KLF4:-0.288194692937;STAT5{A,B}:-0.303113151938;IKZF1:-0.30766079326;SOX17:-0.314446776773;ATF2:-0.336785387597;TOPORS:-0.339690523534;GATA6:-0.340948331716;NFE2:-0.340979441369;SPI1:-0.350882058936;SPIB:-0.352234415664;RBPJ:-0.357096633226;LMO2:-0.357927356423;HLF:-0.359290113052;PPARG:-0.375883295944;EGR1..3:-0.37937905201;FOXP1:-0.39378353326;GATA4:-0.421276405423;IRF1,2:-0.44654574923;DMAP1_NCOR{1,2}_SMARC:-0.452090358155;MED-1{core}:-0.457711145652;UFEwm:-0.458573927576;ETS1,2:-0.467068350561;ZNF148:-0.516656466584;NFKB1_REL_RELA:-0.520262312989;MAFB:-0.538584591308;ESR1:-0.541438137401;NFATC1..3:-0.542357921046;HMGA1,2:-0.547985648072;AHR_ARNT_ARNT2:-0.552781689976;CEBPA,B_DDIT3:-0.554854582629;IKZF2:-0.576218527701;PITX1..3:-0.577645786048;ZBTB16:-0.584277889397;TEAD1:-0.587973389783;FOXD3:-0.591018912881;TBP:-0.600081860747;NR1H4:-0.610110838393;TLX2:-0.6383997021;MTE{core}:-0.672008840719;RXRA_VDR{dimer}:-0.673285456563;NKX2-2,8:-0.681446310669;MAZ:-0.68430231873;NKX2-1,4:-0.68729061562;PRDM1:-0.701759261391;SMAD1..7,9:-0.711089782959;FOXN1:-0.724789209277;HOXA9_MEIS1:-0.746345327753;CDX1,2,4:-0.749812400436;MYFfamily:-0.751719472906;SNAI1..3:-0.75197406332;FOXO1,3,4:-0.755542093513;DBP:-0.76746025584;STAT2,4,6:-0.774650531127;RREB1:-0.806137170418;NR6A1:-0.842066895523;TFAP2{A,C}:-0.853913174694;ZEB1:-0.872247099841;GLI1..3:-0.923696362755;TFAP4:-0.929512214755;SRF:-0.934186067349;MYOD1:-0.993319429259;SPZ1:-1.013726671;MZF1:-1.01991341877;AIRE:-1.05030829006;NANOG{mouse}:-1.10858628226;PATZ1:-1.11182609937;ATF6:-1.20770665525;HIF1A:-1.22808476487;HMX1:-1.22890654994;POU5F1:-1.36468449663;T:-1.48100924629;TBX4,5:-1.57075210995 | |top_motifs=HOX{A6,A7,B6,B7}:2.34017222782;PAX6:2.29928714152;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.2429720306;TFDP1:1.85627074885;SREBF1,2:1.7154909643;NANOG:1.58301434145;EN1,2:1.51396899721;E2F1..5:1.42687360317;PAX8:1.39495855127;NKX2-3_NKX2-5:1.3911088238;ESRRA:1.37703368243;XCPE1{core}:1.20440390928;GFI1:1.19708310417;NR5A1,2:1.18201354628;NFE2L1:1.14946473824;PBX1:1.1120056004;POU3F1..4:1.10984063924;NFY{A,B,C}:1.05093522949;NR3C1:1.03552193166;POU1F1:1.02856256361;LHX3,4:0.949159290941;HOX{A4,D4}:0.860026739911;bHLH_family:0.847215510746;ZNF143:0.839564861584;NRF1:0.807252209638;SOX{8,9,10}:0.793764851659;JUN:0.784097363755;ELK1,4_GABP{A,B1}:0.756835200485;STAT1,3:0.620822489218;CUX2:0.582576198984;BREu{core}:0.564974579756;YY1:0.541521166545;VSX1,2:0.532103525957;CDC5L:0.530437574012;FOXA2:0.52918401659;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.502810394069;PRRX1,2:0.467236243981;NFIX:0.456371893606;HBP1_HMGB_SSRP1_UBTF:0.433584842228;ALX4:0.421938831715;PAX1,9:0.414702632215;FOXQ1:0.413606162896;HAND1,2:0.402462467248;OCT4_SOX2{dimer}:0.392906486317;RFX2..5_RFXANK_RFXAP:0.388393091718;ZNF238:0.380685819285;ARID5B:0.376726391085;CREB1:0.360416521624;NKX3-1:0.359688584282;ALX1:0.32689206588;ZNF423:0.313680635863;TEF:0.312359594372;ADNP_IRX_SIX_ZHX:0.269905247059;SP1:0.264281166643;XBP1:0.246907682946;GTF2A1,2:0.232311393101;PAX5:0.226878211956;MYB:0.216923797751;HNF4A_NR2F1,2:0.213659195875;SOX5:0.206053975404;MYBL2:0.197091172326;NKX6-1,2:0.194900409056;PAX4:0.188964787224;PDX1:0.188721661301;HOX{A5,B5}:0.173149625891;HSF1,2:0.171838483064;ZFP161:0.156769113426;HES1:0.141679229106;ATF4:0.141667236437;FOX{F1,F2,J1}:0.0945066477706;NHLH1,2:0.0847201276496;RFX1:0.0703816567601;GZF1:0.069661670011;FOSL2:0.048769396802;HIC1:0.0373185927439;RXR{A,B,G}:0.0287798852427;ELF1,2,4:0.0234307137682;ZBTB6:0.0213016247314;LEF1_TCF7_TCF7L1,2:0.0087534596752;FOXM1:0.00503134831252;CRX:0.00100206135673;TFAP2B:-0.00941461776622;POU2F1..3:-0.0260448575229;FOXP3:-0.0314894495594;POU6F1:-0.0374655272468;AR:-0.0391747024406;REST:-0.0433164617071;GTF2I:-0.0460543190832;TFCP2:-0.0669813540096;FOX{D1,D2}:-0.068060031044;GFI1B:-0.0684212912244;SOX2:-0.0737380592888;TLX1..3_NFIC{dimer}:-0.0887061635741;NKX3-2:-0.0915540602099;BACH2:-0.0985853354441;ATF5_CREB3:-0.103417122321;EVI1:-0.105909047921;MTF1:-0.109990055225;MEF2{A,B,C,D}:-0.121972852947;EBF1:-0.128828158181;GCM1,2:-0.141830542534;TP53:-0.145465383299;FOXL1:-0.155920325253;RUNX1..3:-0.157118720491;FOX{I1,J2}:-0.158484075842;FOS_FOS{B,L1}_JUN{B,D}:-0.170866046294;IRF7:-0.198876257514;PAX2:-0.202509574193;EP300:-0.203403394697;ONECUT1,2:-0.205154274504;HNF1A:-0.205350497259;BPTF:-0.206326156773;TAL1_TCF{3,4,12}:-0.210616201684;PAX3,7:-0.211462267518;ZNF384:-0.215090240284;TGIF1:-0.227208675963;NFE2L2:-0.238051188099;RORA:-0.263607831766;NFIL3:-0.271748913135;ZIC1..3:-0.287818250186;KLF4:-0.288194692937;STAT5{A,B}:-0.303113151938;IKZF1:-0.30766079326;SOX17:-0.314446776773;ATF2:-0.336785387597;TOPORS:-0.339690523534;GATA6:-0.340948331716;NFE2:-0.340979441369;SPI1:-0.350882058936;SPIB:-0.352234415664;RBPJ:-0.357096633226;LMO2:-0.357927356423;HLF:-0.359290113052;PPARG:-0.375883295944;EGR1..3:-0.37937905201;FOXP1:-0.39378353326;GATA4:-0.421276405423;IRF1,2:-0.44654574923;DMAP1_NCOR{1,2}_SMARC:-0.452090358155;MED-1{core}:-0.457711145652;UFEwm:-0.458573927576;ETS1,2:-0.467068350561;ZNF148:-0.516656466584;NFKB1_REL_RELA:-0.520262312989;MAFB:-0.538584591308;ESR1:-0.541438137401;NFATC1..3:-0.542357921046;HMGA1,2:-0.547985648072;AHR_ARNT_ARNT2:-0.552781689976;CEBPA,B_DDIT3:-0.554854582629;IKZF2:-0.576218527701;PITX1..3:-0.577645786048;ZBTB16:-0.584277889397;TEAD1:-0.587973389783;FOXD3:-0.591018912881;TBP:-0.600081860747;NR1H4:-0.610110838393;TLX2:-0.6383997021;MTE{core}:-0.672008840719;RXRA_VDR{dimer}:-0.673285456563;NKX2-2,8:-0.681446310669;MAZ:-0.68430231873;NKX2-1,4:-0.68729061562;PRDM1:-0.701759261391;SMAD1..7,9:-0.711089782959;FOXN1:-0.724789209277;HOXA9_MEIS1:-0.746345327753;CDX1,2,4:-0.749812400436;MYFfamily:-0.751719472906;SNAI1..3:-0.75197406332;FOXO1,3,4:-0.755542093513;DBP:-0.76746025584;STAT2,4,6:-0.774650531127;RREB1:-0.806137170418;NR6A1:-0.842066895523;TFAP2{A,C}:-0.853913174694;ZEB1:-0.872247099841;GLI1..3:-0.923696362755;TFAP4:-0.929512214755;SRF:-0.934186067349;MYOD1:-0.993319429259;SPZ1:-1.013726671;MZF1:-1.01991341877;AIRE:-1.05030829006;NANOG{mouse}:-1.10858628226;PATZ1:-1.11182609937;ATF6:-1.20770665525;HIF1A:-1.22808476487;HMX1:-1.22890654994;POU5F1:-1.36468449663;T:-1.48100924629;TBX4,5:-1.57075210995 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11663-122F7;search_select_hide=table117:FF:11663-122F7 | |||
}} | }} | ||
Latest revision as of 18:13, 4 June 2020
| Name: | Melanocyte - dark, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12570 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12570
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12570
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.861 |
| 10 | 10 | 0.328 |
| 100 | 100 | 0.43 |
| 101 | 101 | 0.555 |
| 102 | 102 | 0.142 |
| 103 | 103 | 0.618 |
| 104 | 104 | 0.77 |
| 105 | 105 | 0.811 |
| 106 | 106 | 1.81654e-4 |
| 107 | 107 | 0.0036 |
| 108 | 108 | 0.35 |
| 109 | 109 | 0.773 |
| 11 | 11 | 0.432 |
| 110 | 110 | 0.349 |
| 111 | 111 | 0.672 |
| 112 | 112 | 0.307 |
| 113 | 113 | 0.119 |
| 114 | 114 | 0.19 |
| 115 | 115 | 0.0664 |
| 116 | 116 | 0.107 |
| 117 | 117 | 0.492 |
| 118 | 118 | 0.901 |
| 119 | 119 | 0.184 |
| 12 | 12 | 0.969 |
| 120 | 120 | 0.969 |
| 121 | 121 | 0.979 |
| 122 | 122 | 0.578 |
| 123 | 123 | 0.731 |
| 124 | 124 | 0.968 |
| 125 | 125 | 0.117 |
| 126 | 126 | 0.65 |
| 127 | 127 | 0.929 |
| 128 | 128 | 0.11 |
| 129 | 129 | 0.534 |
| 13 | 13 | 0.62 |
| 130 | 130 | 0.0782 |
| 131 | 131 | 0.064 |
| 132 | 132 | 0.1 |
| 133 | 133 | 0.899 |
| 134 | 134 | 0.674 |
| 135 | 135 | 0.92 |
| 136 | 136 | 0.0132 |
| 137 | 137 | 0.952 |
| 138 | 138 | 0.914 |
| 139 | 139 | 2.18674e-4 |
| 14 | 14 | 0.962 |
| 140 | 140 | 0.323 |
| 141 | 141 | 0.894 |
| 142 | 142 | 0.212 |
| 143 | 143 | 0.692 |
| 144 | 144 | 0.568 |
| 145 | 145 | 0.469 |
| 146 | 146 | 0.54 |
| 147 | 147 | 0.869 |
| 148 | 148 | 0.0371 |
| 149 | 149 | 0.0232 |
| 15 | 15 | 0.841 |
| 150 | 150 | 0.562 |
| 151 | 151 | 0.434 |
| 152 | 152 | 0.0773 |
| 153 | 153 | 0.258 |
| 154 | 154 | 0.616 |
| 155 | 155 | 0.934 |
| 156 | 156 | 0.909 |
| 157 | 157 | 0.668 |
| 158 | 158 | 0.63 |
| 159 | 159 | 0.759 |
| 16 | 16 | 0.656 |
| 160 | 160 | 0.246 |
| 161 | 161 | 0.285 |
| 162 | 162 | 0.707 |
| 163 | 163 | 0.362 |
| 164 | 164 | 0.305 |
| 165 | 165 | 0.287 |
| 166 | 166 | 0.33 |
| 167 | 167 | 0.528 |
| 168 | 168 | 0.894 |
| 169 | 169 | 0.0875 |
| 17 | 17 | 0.405 |
| 18 | 18 | 0.844 |
| 19 | 19 | 0.477 |
| 2 | 2 | 0.259 |
| 20 | 20 | 0.516 |
| 21 | 21 | 0.36 |
| 22 | 22 | 0.919 |
| 23 | 23 | 0.00445 |
| 24 | 24 | 0.878 |
| 25 | 25 | 0.618 |
| 26 | 26 | 0.274 |
| 27 | 27 | 0.734 |
| 28 | 28 | 0.708 |
| 29 | 29 | 0.404 |
| 3 | 3 | 0.332 |
| 30 | 30 | 0.24 |
| 31 | 31 | 0.92 |
| 32 | 32 | 2.15888e-4 |
| 33 | 33 | 0.755 |
| 34 | 34 | 0.478 |
| 35 | 35 | 0.0572 |
| 36 | 36 | 0.622 |
| 37 | 37 | 0.101 |
| 38 | 38 | 0.979 |
| 39 | 39 | 0.465 |
| 4 | 4 | 0.544 |
| 40 | 40 | 0.429 |
| 41 | 41 | 0.989 |
| 42 | 42 | 0.451 |
| 43 | 43 | 0.175 |
| 44 | 44 | 0.921 |
| 45 | 45 | 0.209 |
| 46 | 46 | 0.364 |
| 47 | 47 | 0.776 |
| 48 | 48 | 0.416 |
| 49 | 49 | 0.357 |
| 5 | 5 | 0.433 |
| 50 | 50 | 0.667 |
| 51 | 51 | 0.736 |
| 52 | 52 | 0.165 |
| 53 | 53 | 0.729 |
| 54 | 54 | 0.874 |
| 55 | 55 | 0.189 |
| 56 | 56 | 0.708 |
| 57 | 57 | 0.365 |
| 58 | 58 | 0.0418 |
| 59 | 59 | 0.0414 |
| 6 | 6 | 0.0608 |
| 60 | 60 | 0.033 |
| 61 | 61 | 0.812 |
| 62 | 62 | 0.00486 |
| 63 | 63 | 0.438 |
| 64 | 64 | 0.911 |
| 65 | 65 | 0.491 |
| 66 | 66 | 0.00588 |
| 67 | 67 | 0.754 |
| 68 | 68 | 0.453 |
| 69 | 69 | 0.722 |
| 7 | 7 | 0.649 |
| 70 | 70 | 0.0411 |
| 71 | 71 | 0.149 |
| 72 | 72 | 0.371 |
| 73 | 73 | 0.3 |
| 74 | 74 | 0.737 |
| 75 | 75 | 0.258 |
| 76 | 76 | 0.335 |
| 77 | 77 | 0.281 |
| 78 | 78 | 0.129 |
| 79 | 79 | 0.495 |
| 8 | 8 | 0.727 |
| 80 | 80 | 0.838 |
| 81 | 81 | 0.391 |
| 82 | 82 | 0.0164 |
| 83 | 83 | 0.933 |
| 84 | 84 | 0.442 |
| 85 | 85 | 0.0322 |
| 86 | 86 | 0.159 |
| 87 | 87 | 0.0908 |
| 88 | 88 | 0.75 |
| 89 | 89 | 0.63 |
| 9 | 9 | 0.347 |
| 90 | 90 | 0.338 |
| 91 | 91 | 0.134 |
| 92 | 92 | 0.00316 |
| 93 | 93 | 0.11 |
| 94 | 94 | 0.87 |
| 95 | 95 | 0.371 |
| 96 | 96 | 0.474 |
| 97 | 97 | 0.549 |
| 98 | 98 | 0.888 |
| 99 | 99 | 0.809 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12570
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000089 human dark melanocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0002566 (dark melanocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000089 (human dark melanocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
