FF:10483-107A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005154 | |||
|accession_numbers=CAGE;DRX008003;DRR008875;DRZ000300;DRZ001685;DRZ011650;DRZ013035 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3493 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aNUGC-4.CNhs11270.10483-107A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aNUGC-4.CNhs11270.10483-107A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aNUGC-4.CNhs11270.10483-107A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aNUGC-4.CNhs11270.10483-107A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aNUGC-4.CNhs11270.10483-107A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10483-107A6 | |id=FF:10483-107A6 | ||
|is_a=DOID:3493;;EFO:0002091;;FF: | |is_a=DOID:3493;;EFO:0002091;;FF:0000210;;FF:0100297 | ||
|is_obsolete= | |||
|library_id=CNhs11270 | |||
|library_id_phase_based=2:CNhs11270 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10483 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10483 | |||
|name=signet ring carcinoma cell line:NUGC-4 | |name=signet ring carcinoma cell line:NUGC-4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11270,LSID758,release008,COMPLETED | |profile_hcage=CNhs11270,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0249805434194815,0,0,0.049961086838963,0,-0.0249456205070862,0.23842438954415,-0.269011673924718,-0.282403560576942,0,0,0,0,0,0,0,0,0.049961086838963,0,0.1353724095793,0,0,-0.103361923509465,0,0,0,0,0,-0.0479968094290945,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.114236746134993,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.057616829645504,0,-0.0969923612426051,0,0,-0.047382540374134,0,0,0,0,0,0,0,0,0.049961086838963,0,0,0,0,0,0,0,0,0,0.0723620783884965,0,0,0.0203221974904413,0,0,0.0609304596165667,0,0,0,0.0102706038614706,-0.0633760998793025,0.047381534969015,0,0.047381534969015,0.049961086838963,-0.0480742643987434,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171801984239785,0.09476306993803,0,0,-0.079112335990984,-0.186703893850328,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.049961086838963,-0.0480742643987434,0.049961086838963,0.049961086838963,0.09476306993803,0.09476306993803,0.09476306993803,0,0,0,0,0,0,-0.0746717738070501,0,-0.338713809172708,-0.00814273294417198,0,0,-0.279457784093004,0,0.049961086838963,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.0374971029017824,0,-0.0880045104102525,0.0264188088606617,0,0,0,0,-0.175477599396294,0,-0.120879483793741,-0.0827201683234173,0,-0.619932974951916,-0.00575140994221901,0,0,0,-0.66368256822028,0.40053543523107,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.488922788547474,0.253602595100557,0,0.00403997189797897,0,0,0,0,0,0,0,0,0.09476306993803,0,0,-0.0574934668214365,-0.120273432668365,0,0.049961086838963,0.23842438954415,0,-0.708713558200388,0,0.0225746056556616,0.358225678257409,0.0566980535224575,-0.112199230522672,0.200103926049519,0,-0.302389727009913,-0.062551108652333,0.131948719569914,0.07251862051883,-0.147401849371139,-0.189981719549847,0,-0.133014432284333,-0.045045116204631,0.0168927771881783,0.0609304596165667,-0.00699743369645465,-0.453356076621072,0.310651453295356,0,0.520672219838191,0,-0.132505933457609,0,0,-0.354742304897474,0.100245276750291,-0.125358594053206,0.076395108154225,-0.0281916851211659,0.116541499711194,-0.0395325284566706,-0.28492935141808,-0.0192473936825218,-0.4215723249037,0,0.049961086838963,-0.00456174554075672,0.106847267153517,0.401222516457532,0.0168116806011409,0,-0.188334856177848,0.0264188088606617,0.047381534969015,-0.258820358221659,-0.0975166855751017,0.172507101478514,0,-0.146312888467177,0,0,0.135887981489278,0,0.09476306993803,-0.122807449926167,-0.127042847959914,-0.182894474716582,0,0.097006066309187,-0.0375393378108798,0.203189525204355,0,0.229799159333326,-0.0960488106184312,-0.0913589883506883,-0.120126703117722,0,0.0890825954494655,-0.0640240151682933,-0.0448391031183335,-0.126752199758605,-0.0584468268118252,-0.0738352889154518,0.0696717799157065,0.0102706038614706,-0.653567455210927,0.00279552937220195,-0.0881268324752877,0.0198813105395942,-0.833583663679417,-0.034695133963204,-0.0487886832998632,0.00496289805404501,0,-0.199662184002627,0,-0.154621507551101,0,-0.0931754783682224,0.127722632077701,-0.266782273102172,0.388661881519113,0,-0.323917458253865,-0.267458717935783,0,0,-0.00039020204355238,0.391467074337751,-0.0556040133966094,0.39356171833243,-0.161689341025626,0.0320543301157574,0,-0.0786770998226023,0,0,0.211649984333387,-0.185514950925426,0.09476306993803,0.0460648200835483,0.0474337306468832,-0.038109333959502,-0.0660099865959711,0,0,-0.47319323651421,0,0,0.410590507939344,-0.0198013422141874,0.527745159613223,-0.158563271548726,0,0.328812964326517,0,0,0.467275231693145,0,-0.138764290910026,0,0,0.010454813320272,0.0558789884883815,0,0.260336109919096,0,0,0,0,0,0,0,0,0,-0.183938106717126,0.405196834857546,0,0.0309022533421416,0,0,0,0,0,0,0,0,-1.59233083881968,0.0197537645095842,0.198635132511944,0,0,0,0,0.105929145634889,-0.108473492156694,0.172507101478514,0.0406443949808826,0.1353724095793,0,0,0,0.00862208014881856,0,0,0,0,-0.057730457053664,-0.113354369215188,0,0,0,-0.27695440160179,0,0,0,0,0.0697365676455215,0,0,0,0,0.175829574425302,-0.0316207927078785,0,0.0358149092751519,-0.632144271876434,0.790212018733585,0,0,-0.211386044950925,0,0.0302447346733776,0.0195495879348511,0,0,0,0,0,0,0,0,0,1.05701816342118,0.047381534969015,0,0,0,0,0,0,0,0,0,0,0.226099953734806,0.114491107352094,0,0,0,0,0,0,0,-0.0241060230789031,0.220151062478986,0,0,0.0249805434194815,0,0,0.049961086838963,0,0,-0.102006498796311,0,0,0,0,0,-0.0969923612426051,0,0,0,0.049961086838963,-0.564807121153884,0,0,-0.07064696818291,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246100354831483,-0.269011673924718,0,0,0,0,0,0.23842438954415,0,-0.27483329820609,0,0,0,0,0.0214880358703227,0,0,0,0.307652910281096,0,-0.0249456205070862,0.049961086838963,0,0,0,0,0.039413002205713,0.047381534969015,0.0249805434194815,0,0,0,0,0,0.09476306993803,0,0,0,0,0,0,0,-0.615611662954666,0,-0.234696996266578,-0.027079244169911,0,0,-0.164942147843392,0,0,0,0,0,0,-0.0063598806090456,0.0467991780476687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.09476306993803,0,0,0,0,0,0,-0.0098775003856069,0,0,0,0,0,0,0,-0.0479968094290945,0,0,0.128208304937043,0,0,0,0,0.0901387988629068,0,0.0400454740520361,-0.196966849083891,-0.141479636387561,0,0,0,-0.054385572482455,0,0,-0.0661755159531434,0,-0.0168163005799384,0,0,0,0,0,0,0,0,0.09476306993803,0,0,0,0,0,0.172507101478514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.103361923509465,0,0.893617738720494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412449295070253,0,0.09476306993803,0.0249805434194815,0,0,0.049961086838963,0,0,0,-0.0340113632754165,0.09476306993803,0,0,0,0,0,0,0,0,0,0,0,0,0.049961086838963,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.133106153271141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.310665797012365,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00173901159990875,0,-0.0344155453910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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=58.323 | |rna_weight_ug=58.323 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1939 | |sample_cell_catalog=RCB1939 | ||
|sample_cell_line=NUGC-4 | |sample_cell_line=NUGC-4 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.07402226643474e-246!GO:0005737;cytoplasm;6.95547716262971e-200!GO:0043231;intracellular membrane-bound organelle;6.11460697282961e-193!GO:0043227;membrane-bound organelle;8.89780970380833e-193!GO:0043226;organelle;7.48873978633748e-192!GO:0043229;intracellular organelle;2.26589840085344e-191!GO:0044422;organelle part;6.89033476771868e-166!GO:0044446;intracellular organelle part;2.12344634854915e-164!GO:0044444;cytoplasmic part;1.93420455319611e-149!GO:0032991;macromolecular complex;1.15569567737583e-101!GO:0044237;cellular metabolic process;5.71149225303204e-94!GO:0030529;ribonucleoprotein complex;9.02065583717887e-91!GO:0044238;primary metabolic process;8.18228740226748e-89!GO:0005739;mitochondrion;2.22252944578223e-81!GO:0044428;nuclear part;6.86925799243814e-79!GO:0043233;organelle lumen;6.60635512344358e-78!GO:0031974;membrane-enclosed lumen;6.60635512344358e-78!GO:0003723;RNA binding;6.81268349306383e-76!GO:0043170;macromolecule metabolic process;3.74185224180521e-72!GO:0005634;nucleus;6.65610235532005e-67!GO:0031090;organelle membrane;2.80647012522055e-65!GO:0005515;protein binding;8.27357482270999e-57!GO:0005840;ribosome;9.21977028506659e-56!GO:0044429;mitochondrial part;5.28732135625167e-55!GO:0006396;RNA processing;4.47838876323321e-53!GO:0043234;protein complex;3.21390181428662e-50!GO:0031967;organelle envelope;4.5157275221847e-50!GO:0006412;translation;7.80481691930081e-50!GO:0031975;envelope;1.2268660064652e-49!GO:0003735;structural constituent of ribosome;7.42548701151839e-49!GO:0009058;biosynthetic process;1.13785339810266e-48!GO:0031981;nuclear lumen;5.95504198981726e-47!GO:0015031;protein transport;1.93364361014665e-46!GO:0019538;protein metabolic process;3.06933276203575e-46!GO:0033036;macromolecule localization;1.01092493764921e-45!GO:0005829;cytosol;1.85982781494217e-43!GO:0044249;cellular biosynthetic process;2.74018911814374e-42!GO:0009059;macromolecule biosynthetic process;3.8204412598777e-42!GO:0045184;establishment of protein localization;4.59548388262412e-42!GO:0044267;cellular protein metabolic process;5.22416200751927e-42!GO:0008104;protein localization;8.76356345378309e-42!GO:0044260;cellular macromolecule metabolic process;1.74667632879111e-41!GO:0033279;ribosomal subunit;3.25232798575577e-40!GO:0016071;mRNA metabolic process;9.48850188172037e-40!GO:0016043;cellular component organization and biogenesis;5.67847977859654e-39!GO:0043283;biopolymer metabolic process;1.13026432073915e-37!GO:0043228;non-membrane-bound organelle;4.66360824911783e-37!GO:0043232;intracellular non-membrane-bound organelle;4.66360824911783e-37!GO:0006397;mRNA processing;1.68440021661121e-36!GO:0008380;RNA splicing;7.10659656981077e-36!GO:0005740;mitochondrial envelope;1.39613251295882e-35!GO:0006259;DNA metabolic process;5.11600515248265e-34!GO:0019866;organelle inner membrane;7.82565718796419e-34!GO:0031966;mitochondrial membrane;1.59876329882148e-33!GO:0065003;macromolecular complex assembly;1.63012132689617e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.98228967914329e-32!GO:0046907;intracellular transport;4.45363508300019e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.77141697162919e-32!GO:0005743;mitochondrial inner membrane;1.00086555800706e-31!GO:0010467;gene expression;2.57829761787753e-31!GO:0006996;organelle organization and biogenesis;2.01088741658273e-29!GO:0022607;cellular component assembly;4.95888364311432e-29!GO:0006886;intracellular protein transport;4.95888364311432e-29!GO:0012505;endomembrane system;5.54109626951899e-29!GO:0000166;nucleotide binding;2.20147001386016e-28!GO:0005654;nucleoplasm;2.12272210632111e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.64074505977979e-27!GO:0007049;cell cycle;2.23023736054549e-26!GO:0005681;spliceosome;2.78836875310891e-25!GO:0031980;mitochondrial lumen;1.75689028055869e-24!GO:0005759;mitochondrial matrix;1.75689028055869e-24!GO:0005783;endoplasmic reticulum;2.2284600267383e-23!GO:0006119;oxidative phosphorylation;2.81369203173102e-23!GO:0006974;response to DNA damage stimulus;8.52151407256476e-23!GO:0044445;cytosolic part;2.93529038155848e-22!GO:0005730;nucleolus;2.18089434426734e-21!GO:0044451;nucleoplasm part;2.27703075425512e-21!GO:0015935;small ribosomal subunit;3.16495553735185e-21!GO:0044265;cellular macromolecule catabolic process;4.38434805807764e-21!GO:0051649;establishment of cellular localization;5.71858602647489e-21!GO:0051641;cellular localization;5.92083572509968e-21!GO:0044432;endoplasmic reticulum part;8.0803396299781e-21!GO:0016462;pyrophosphatase activity;9.83537355251821e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.34260486818669e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.88487350448927e-20!GO:0005694;chromosome;3.24811217352154e-20!GO:0017111;nucleoside-triphosphatase activity;3.83358036096373e-20!GO:0015934;large ribosomal subunit;4.12984182895563e-20!GO:0044455;mitochondrial membrane part;4.35761030375417e-20!GO:0017076;purine nucleotide binding;1.35744229676451e-19!GO:0016874;ligase activity;1.46164670807431e-19!GO:0032553;ribonucleotide binding;2.32021479217667e-19!GO:0032555;purine ribonucleotide binding;2.32021479217667e-19!GO:0000278;mitotic cell cycle;2.91017325668115e-19!GO:0003676;nucleic acid binding;3.67102629662266e-19!GO:0022402;cell cycle process;8.98908242929412e-19!GO:0006281;DNA repair;9.65718695226956e-19!GO:0044248;cellular catabolic process;1.14131820088044e-18!GO:0051186;cofactor metabolic process;2.28951949171986e-18!GO:0009719;response to endogenous stimulus;3.65484158062475e-18!GO:0022618;protein-RNA complex assembly;6.01822122001944e-18!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.54292000650176e-18!GO:0005746;mitochondrial respiratory chain;8.96571978707268e-18!GO:0005789;endoplasmic reticulum membrane;9.68231929245666e-18!GO:0044427;chromosomal part;1.53229060328775e-17!GO:0006457;protein folding;1.82976922060277e-17!GO:0005524;ATP binding;2.4629648697426e-17!GO:0030554;adenyl nucleotide binding;3.03537607771825e-17!GO:0032559;adenyl ribonucleotide binding;3.38929265315182e-17!GO:0009057;macromolecule catabolic process;3.50483824709726e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.37522787302289e-17!GO:0005761;mitochondrial ribosome;7.84641912233562e-17!GO:0000313;organellar ribosome;7.84641912233562e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.29154775230618e-16!GO:0006260;DNA replication;2.94625478332732e-16!GO:0008135;translation factor activity, nucleic acid binding;6.59207948903844e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.21548792600286e-15!GO:0003954;NADH dehydrogenase activity;1.21548792600286e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.21548792600286e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.72556721773369e-15!GO:0051301;cell division;2.18567957917422e-15!GO:0043285;biopolymer catabolic process;2.42094519727151e-15!GO:0019941;modification-dependent protein catabolic process;2.49917366078174e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.49917366078174e-15!GO:0006732;coenzyme metabolic process;2.76276684740855e-15!GO:0016887;ATPase activity;3.31999101399323e-15!GO:0006512;ubiquitin cycle;4.86009613397493e-15!GO:0042254;ribosome biogenesis and assembly;5.00268373839165e-15!GO:0044257;cellular protein catabolic process;5.05178230867946e-15!GO:0006511;ubiquitin-dependent protein catabolic process;5.0594721895744e-15!GO:0000087;M phase of mitotic cell cycle;6.68695912010433e-15!GO:0006605;protein targeting;9.7164685916389e-15!GO:0051276;chromosome organization and biogenesis;1.14940480915432e-14!GO:0008134;transcription factor binding;1.17264176474806e-14!GO:0007067;mitosis;1.33846106683995e-14!GO:0042623;ATPase activity, coupled;1.56472886431978e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.94744691952233e-14!GO:0005635;nuclear envelope;2.03681855666269e-14!GO:0005794;Golgi apparatus;2.35288882327645e-14!GO:0022403;cell cycle phase;2.38598466956231e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.08599201212558e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.41036393267243e-14!GO:0042773;ATP synthesis coupled electron transport;5.41036393267243e-14!GO:0031965;nuclear membrane;7.42338660498304e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.35180210431911e-14!GO:0043412;biopolymer modification;9.06369621858035e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;9.75758271528e-14!GO:0000375;RNA splicing, via transesterification reactions;9.75758271528e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.75758271528e-14!GO:0048770;pigment granule;1.0530110242456e-13!GO:0042470;melanosome;1.0530110242456e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.53987972357347e-13!GO:0045271;respiratory chain complex I;1.53987972357347e-13!GO:0005747;mitochondrial respiratory chain complex I;1.53987972357347e-13!GO:0044453;nuclear membrane part;3.24996992498549e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.0322194668975e-13!GO:0000279;M phase;2.42892830816772e-12!GO:0030163;protein catabolic process;3.18611055812767e-12!GO:0051082;unfolded protein binding;3.26962115633305e-12!GO:0016604;nuclear body;6.51179835910866e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;8.49493499853968e-12!GO:0005643;nuclear pore;9.70463793495018e-12!GO:0004386;helicase activity;1.03791926504244e-11!GO:0048193;Golgi vesicle transport;1.11312293524015e-11!GO:0016070;RNA metabolic process;1.34473491357641e-11!GO:0009055;electron carrier activity;1.51855505081088e-11!GO:0003743;translation initiation factor activity;1.65889230438492e-11!GO:0009056;catabolic process;1.82737106165121e-11!GO:0016491;oxidoreductase activity;1.87961961747171e-11!GO:0050657;nucleic acid transport;2.32499683294723e-11!GO:0051236;establishment of RNA localization;2.32499683294723e-11!GO:0050658;RNA transport;2.32499683294723e-11!GO:0006464;protein modification process;2.61212493603895e-11!GO:0006403;RNA localization;2.63099857250529e-11!GO:0006323;DNA packaging;2.78617788557551e-11!GO:0006413;translational initiation;3.07391025222572e-11!GO:0006399;tRNA metabolic process;3.80055393951486e-11!GO:0006446;regulation of translational initiation;5.73724401128337e-11!GO:0016072;rRNA metabolic process;6.97133141294316e-11!GO:0000785;chromatin;7.12065845333329e-11!GO:0065002;intracellular protein transport across a membrane;7.25476484383361e-11!GO:0006366;transcription from RNA polymerase II promoter;7.66394707891528e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.85623208461589e-11!GO:0006913;nucleocytoplasmic transport;1.23830371302832e-10!GO:0016740;transferase activity;1.3669288941445e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.39495537225648e-10!GO:0051169;nuclear transport;2.71073441760872e-10!GO:0016192;vesicle-mediated transport;3.08183382998478e-10!GO:0006364;rRNA processing;3.11569034045239e-10!GO:0008026;ATP-dependent helicase activity;5.3432623593644e-10!GO:0006461;protein complex assembly;5.67217888326743e-10!GO:0046930;pore complex;6.96157744425207e-10!GO:0051188;cofactor biosynthetic process;7.80520278392524e-10!GO:0065004;protein-DNA complex assembly;1.08958353513145e-09!GO:0006915;apoptosis;1.24274004686254e-09!GO:0006333;chromatin assembly or disassembly;1.35947975855684e-09!GO:0012501;programmed cell death;1.42534400665986e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.569795248683e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.64403508818051e-09!GO:0006163;purine nucleotide metabolic process;1.71737683340384e-09!GO:0016787;hydrolase activity;1.74392834788529e-09!GO:0051028;mRNA transport;1.82721290691406e-09!GO:0051726;regulation of cell cycle;2.00576519227771e-09!GO:0009259;ribonucleotide metabolic process;2.30630388105984e-09!GO:0009060;aerobic respiration;2.46811203685169e-09!GO:0045333;cellular respiration;2.94756567695866e-09!GO:0008639;small protein conjugating enzyme activity;3.11181514303615e-09!GO:0000074;regulation of progression through cell cycle;3.24302454027638e-09!GO:0005793;ER-Golgi intermediate compartment;5.06578286799978e-09!GO:0003712;transcription cofactor activity;6.59502414527156e-09!GO:0004842;ubiquitin-protein ligase activity;7.39304166269372e-09!GO:0016607;nuclear speck;7.60972473382002e-09!GO:0006091;generation of precursor metabolites and energy;9.53884083281958e-09!GO:0043687;post-translational protein modification;1.04617165123598e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.07996021723336e-08!GO:0046034;ATP metabolic process;1.11486408261307e-08!GO:0009141;nucleoside triphosphate metabolic process;1.12581697653682e-08!GO:0009150;purine ribonucleotide metabolic process;1.14229715136888e-08!GO:0016779;nucleotidyltransferase activity;1.25598867632672e-08!GO:0005768;endosome;1.28486486970539e-08!GO:0019829;cation-transporting ATPase activity;1.28567500487831e-08!GO:0043566;structure-specific DNA binding;1.37213250583543e-08!GO:0015986;ATP synthesis coupled proton transport;1.41895768512305e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.41895768512305e-08!GO:0009108;coenzyme biosynthetic process;1.47730601843652e-08!GO:0019787;small conjugating protein ligase activity;1.73344488595455e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.88120697237923e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.88120697237923e-08!GO:0008219;cell death;2.17273666640458e-08!GO:0016265;death;2.17273666640458e-08!GO:0006164;purine nucleotide biosynthetic process;2.88526965084953e-08!GO:0008565;protein transporter activity;4.08162163558395e-08!GO:0007005;mitochondrion organization and biogenesis;4.31310023615296e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.56843508742101e-08!GO:0003697;single-stranded DNA binding;7.47163943603915e-08!GO:0016881;acid-amino acid ligase activity;8.72506586746691e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.14530317567202e-07!GO:0009260;ribonucleotide biosynthetic process;1.16605807040784e-07!GO:0006099;tricarboxylic acid cycle;1.32178417138228e-07!GO:0046356;acetyl-CoA catabolic process;1.32178417138228e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.01021510677493e-07!GO:0006754;ATP biosynthetic process;2.23596719217215e-07!GO:0006753;nucleoside phosphate metabolic process;2.23596719217215e-07!GO:0017038;protein import;2.2705238169564e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.33376560853947e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.33376560853947e-07!GO:0005770;late endosome;2.36475319044761e-07!GO:0032446;protein modification by small protein conjugation;2.47835421855207e-07!GO:0016567;protein ubiquitination;2.85788313987352e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.18720959329863e-07!GO:0006261;DNA-dependent DNA replication;3.67417579272296e-07!GO:0006082;organic acid metabolic process;3.91079877821954e-07!GO:0006334;nucleosome assembly;4.04166044393739e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.15422796374608e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.15422796374608e-07!GO:0019752;carboxylic acid metabolic process;5.29792879470391e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.29792879470391e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.29792879470391e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.29792879470391e-07!GO:0044431;Golgi apparatus part;5.84640587913257e-07!GO:0006084;acetyl-CoA metabolic process;6.68950104269615e-07!GO:0045259;proton-transporting ATP synthase complex;7.00751032109354e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.16904416122623e-07!GO:0016568;chromatin modification;7.16904416122623e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.93182961033016e-07!GO:0031497;chromatin assembly;8.22884024748825e-07!GO:0006752;group transfer coenzyme metabolic process;8.72526182321822e-07!GO:0043038;amino acid activation;8.74500134015492e-07!GO:0006418;tRNA aminoacylation for protein translation;8.74500134015492e-07!GO:0043039;tRNA aminoacylation;8.74500134015492e-07!GO:0009117;nucleotide metabolic process;9.19270217206556e-07!GO:0030532;small nuclear ribonucleoprotein complex;9.90305754285598e-07!GO:0043623;cellular protein complex assembly;1.11921176410631e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.14793805825047e-06!GO:0044255;cellular lipid metabolic process;1.2878309589514e-06!GO:0008610;lipid biosynthetic process;1.33205950678397e-06!GO:0000245;spliceosome assembly;1.40640532241307e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.51486116901493e-06!GO:0005667;transcription factor complex;1.96463095090204e-06!GO:0044440;endosomal part;2.1028282481094e-06!GO:0010008;endosome membrane;2.1028282481094e-06!GO:0030120;vesicle coat;2.39358103227253e-06!GO:0030662;coated vesicle membrane;2.39358103227253e-06!GO:0009109;coenzyme catabolic process;2.53148611943101e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.90426668558903e-06!GO:0004298;threonine endopeptidase activity;3.08418997020023e-06!GO:0008654;phospholipid biosynthetic process;3.92876839614994e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.96362106827975e-06!GO:0000775;chromosome, pericentric region;4.2879223160107e-06!GO:0051427;hormone receptor binding;4.59649485429236e-06!GO:0005762;mitochondrial large ribosomal subunit;4.87412618205118e-06!GO:0000315;organellar large ribosomal subunit;4.87412618205118e-06!GO:0015630;microtubule cytoskeleton;5.75406440486429e-06!GO:0000314;organellar small ribosomal subunit;6.86780289147321e-06!GO:0005763;mitochondrial small ribosomal subunit;6.86780289147321e-06!GO:0048475;coated membrane;7.11034631431735e-06!GO:0030117;membrane coat;7.11034631431735e-06!GO:0042981;regulation of apoptosis;7.21865047655408e-06!GO:0005657;replication fork;7.23838409344544e-06!GO:0051187;cofactor catabolic process;7.61019085934634e-06!GO:0016853;isomerase activity;7.96950944368877e-06!GO:0003724;RNA helicase activity;8.0269323134479e-06!GO:0051246;regulation of protein metabolic process;8.3268764415993e-06!GO:0007051;spindle organization and biogenesis;8.92918228021747e-06!GO:0003690;double-stranded DNA binding;9.42517043976078e-06!GO:0000139;Golgi membrane;1.02827510572522e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.02827510572522e-05!GO:0035257;nuclear hormone receptor binding;1.09655178111189e-05!GO:0043067;regulation of programmed cell death;1.12400692475292e-05!GO:0006613;cotranslational protein targeting to membrane;1.19496174681134e-05!GO:0005819;spindle;1.19496174681134e-05!GO:0000151;ubiquitin ligase complex;1.21001569183443e-05!GO:0051329;interphase of mitotic cell cycle;1.2948038014637e-05!GO:0045454;cell redox homeostasis;1.45434497732423e-05!GO:0051168;nuclear export;1.46092829700906e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.48361018950385e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.70854231829293e-05!GO:0006793;phosphorus metabolic process;1.7684457233688e-05!GO:0006796;phosphate metabolic process;1.7684457233688e-05!GO:0016126;sterol biosynthetic process;2.49980489896878e-05!GO:0006302;double-strand break repair;2.71144789675071e-05!GO:0005815;microtubule organizing center;3.25320824752083e-05!GO:0050662;coenzyme binding;3.56443805135267e-05!GO:0016563;transcription activator activity;3.62629209527271e-05!GO:0008033;tRNA processing;3.71962221092835e-05!GO:0003713;transcription coactivator activity;4.28714344658239e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.2987344139629e-05!GO:0005813;centrosome;4.31881849322096e-05!GO:0003899;DNA-directed RNA polymerase activity;4.31881849322096e-05!GO:0051325;interphase;5.01077278518463e-05!GO:0051170;nuclear import;5.59655633339094e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.59655633339094e-05!GO:0015399;primary active transmembrane transporter activity;5.59655633339094e-05!GO:0043021;ribonucleoprotein binding;6.20986929731821e-05!GO:0006612;protein targeting to membrane;6.66753919567526e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.98837692137902e-05!GO:0006629;lipid metabolic process;6.98938295802399e-05!GO:0008094;DNA-dependent ATPase activity;7.0648785648209e-05!GO:0006414;translational elongation;7.23408567826104e-05!GO:0048471;perinuclear region of cytoplasm;8.38564540701091e-05!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;8.66223647879364e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000102989498520726!GO:0044452;nucleolar part;0.00011100137838846!GO:0008186;RNA-dependent ATPase activity;0.000123393179729974!GO:0005048;signal sequence binding;0.000136266220607761!GO:0006066;alcohol metabolic process;0.000136409884344356!GO:0005525;GTP binding;0.000143868897271706!GO:0006118;electron transport;0.000144484405817846!GO:0006606;protein import into nucleus;0.000151019873735066!GO:0000786;nucleosome;0.000151019873735066!GO:0042802;identical protein binding;0.00015583844448824!GO:0000075;cell cycle checkpoint;0.000161413826143087!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000167068440733491!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000168417853350425!GO:0016310;phosphorylation;0.000169749021346919!GO:0015992;proton transport;0.000173270147189808!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000178756445901603!GO:0006695;cholesterol biosynthetic process;0.000181308172685752!GO:0006401;RNA catabolic process;0.000188757782638488!GO:0046474;glycerophospholipid biosynthetic process;0.000204383131062737!GO:0006818;hydrogen transport;0.000207238577434464!GO:0048037;cofactor binding;0.000225290820218055!GO:0006916;anti-apoptosis;0.000261204685309896!GO:0031988;membrane-bound vesicle;0.000266987422142821!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000288893603376672!GO:0031324;negative regulation of cellular metabolic process;0.000302434836761711!GO:0046489;phosphoinositide biosynthetic process;0.000305893097736258!GO:0051052;regulation of DNA metabolic process;0.000322515123157829!GO:0004004;ATP-dependent RNA helicase activity;0.000349188016510796!GO:0016023;cytoplasmic membrane-bound vesicle;0.000355268664665531!GO:0031968;organelle outer membrane;0.000367730113421983!GO:0043069;negative regulation of programmed cell death;0.00037556748159398!GO:0003729;mRNA binding;0.000387189849342018!GO:0043492;ATPase activity, coupled to movement of substances;0.000397188816868753!GO:0043681;protein import into mitochondrion;0.000414121758789242!GO:0019867;outer membrane;0.000438381461958189!GO:0043066;negative regulation of apoptosis;0.000446014278945801!GO:0005885;Arp2/3 protein complex;0.000454190818632946!GO:0006626;protein targeting to mitochondrion;0.000455506174516009!GO:0003924;GTPase activity;0.000467751119573548!GO:0003714;transcription corepressor activity;0.000469107457960848!GO:0051287;NAD binding;0.000499097077972458!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000514154711721035!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000516478636925636!GO:0006650;glycerophospholipid metabolic process;0.000530155095507681!GO:0005741;mitochondrial outer membrane;0.000568851467468727!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000575206338110672!GO:0005798;Golgi-associated vesicle;0.000582754849879827!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00059721997573439!GO:0046467;membrane lipid biosynthetic process;0.000603606027056653!GO:0005996;monosaccharide metabolic process;0.000605263541352623!GO:0009892;negative regulation of metabolic process;0.000614101795748346!GO:0004518;nuclease activity;0.000674718900592327!GO:0016741;transferase activity, transferring one-carbon groups;0.000677676742785295!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000691515388917543!GO:0008629;induction of apoptosis by intracellular signals;0.000696766782536542!GO:0019318;hexose metabolic process;0.000698149543475778!GO:0003684;damaged DNA binding;0.000742356053543135!GO:0016859;cis-trans isomerase activity;0.000754005419900625!GO:0045893;positive regulation of transcription, DNA-dependent;0.000772994300985412!GO:0005788;endoplasmic reticulum lumen;0.000801863609019424!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000807105477811827!GO:0044262;cellular carbohydrate metabolic process;0.000872802544216772!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000879941278871706!GO:0016564;transcription repressor activity;0.000897803622488462!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000906398795553302!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000906398795553302!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000906398795553302!GO:0046164;alcohol catabolic process;0.000906398795553302!GO:0008168;methyltransferase activity;0.00092398727111122!GO:0022890;inorganic cation transmembrane transporter activity;0.000938951336601783!GO:0005773;vacuole;0.000973560811329077!GO:0006497;protein amino acid lipidation;0.000991263810009417!GO:0030384;phosphoinositide metabolic process;0.000991263810009417!GO:0007264;small GTPase mediated signal transduction;0.00102510507229086!GO:0007088;regulation of mitosis;0.0010302739787732!GO:0003682;chromatin binding;0.00104623689657806!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0010549253935633!GO:0030867;rough endoplasmic reticulum membrane;0.00106217815267573!GO:0019843;rRNA binding;0.00108750639528567!GO:0003678;DNA helicase activity;0.00109292845658228!GO:0006402;mRNA catabolic process;0.00115141555403911!GO:0000776;kinetochore;0.00117614420197298!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00117800634751446!GO:0045941;positive regulation of transcription;0.00118354771409306!GO:0016363;nuclear matrix;0.00119740210231808!GO:0042770;DNA damage response, signal transduction;0.00120787133493156!GO:0048523;negative regulation of cellular process;0.00123627958809446!GO:0033116;ER-Golgi intermediate compartment membrane;0.00124623296706191!GO:0009165;nucleotide biosynthetic process;0.00130059945510261!GO:0032561;guanyl ribonucleotide binding;0.00130424579727437!GO:0019001;guanyl nucleotide binding;0.00130424579727437!GO:0051920;peroxiredoxin activity;0.00132025789821667!GO:0007059;chromosome segregation;0.00132643242290096!GO:0035258;steroid hormone receptor binding;0.00136679584866925!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00139153724979743!GO:0046365;monosaccharide catabolic process;0.00139153724979743!GO:0006611;protein export from nucleus;0.00143240559295841!GO:0006352;transcription initiation;0.00143240559295841!GO:0051789;response to protein stimulus;0.0014449558883053!GO:0006986;response to unfolded protein;0.0014449558883053!GO:0031252;leading edge;0.00144682816843098!GO:0006839;mitochondrial transport;0.00154549789743358!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00157737345109701!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00157737345109701!GO:0006506;GPI anchor biosynthetic process;0.00158959842188453!GO:0031982;vesicle;0.00175943605062496!GO:0030659;cytoplasmic vesicle membrane;0.0017615590377823!GO:0045786;negative regulation of progression through cell cycle;0.00176161415101504!GO:0006520;amino acid metabolic process;0.00178249864926738!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00180994036548648!GO:0015002;heme-copper terminal oxidase activity;0.00180994036548648!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00180994036548648!GO:0004129;cytochrome-c oxidase activity;0.00180994036548648!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00187277276416691!GO:0065009;regulation of a molecular function;0.00189003539451115!GO:0003746;translation elongation factor activity;0.00197366818308839!GO:0000059;protein import into nucleus, docking;0.00197970748102256!GO:0048500;signal recognition particle;0.0020481597070898!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00205314908549906!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00208045550055247!GO:0004527;exonuclease activity;0.00211751853650318!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00211751853650318!GO:0006643;membrane lipid metabolic process;0.00213756286015425!GO:0005769;early endosome;0.00213787443292985!GO:0005684;U2-dependent spliceosome;0.00217177537980751!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00229734442603711!GO:0019320;hexose catabolic process;0.00236189810831557!GO:0032508;DNA duplex unwinding;0.00236189810831557!GO:0032392;DNA geometric change;0.00236189810831557!GO:0031410;cytoplasmic vesicle;0.00241909897030332!GO:0006891;intra-Golgi vesicle-mediated transport;0.00241909897030332!GO:0030176;integral to endoplasmic reticulum membrane;0.00242376279933487!GO:0006310;DNA recombination;0.00243718015525475!GO:0005777;peroxisome;0.00257745000087372!GO:0042579;microbody;0.00257745000087372!GO:0008312;7S RNA binding;0.00265950088286797!GO:0031072;heat shock protein binding;0.00285923246257386!GO:0046483;heterocycle metabolic process;0.0028652571987582!GO:0019899;enzyme binding;0.00302315947652626!GO:0031902;late endosome membrane;0.00302315947652626!GO:0000287;magnesium ion binding;0.00311535810728664!GO:0007006;mitochondrial membrane organization and biogenesis;0.00314240145384683!GO:0006505;GPI anchor metabolic process;0.00314240145384683!GO:0030658;transport vesicle membrane;0.00325967027828136!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00335786149275609!GO:0006405;RNA export from nucleus;0.00335786149275609!GO:0000086;G2/M transition of mitotic cell cycle;0.00355959106556542!GO:0007052;mitotic spindle organization and biogenesis;0.00392352282088918!GO:0008139;nuclear localization sequence binding;0.00395217924042851!GO:0000049;tRNA binding;0.00396366818137891!GO:0051252;regulation of RNA metabolic process;0.00402094370514517!GO:0030118;clathrin coat;0.00422338359018558!GO:0042158;lipoprotein biosynthetic process;0.00423273648216858!GO:0006007;glucose catabolic process;0.00444807716132887!GO:0000323;lytic vacuole;0.00460346054945441!GO:0005764;lysosome;0.00460346054945441!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0046289746003847!GO:0006595;polyamine metabolic process;0.00475364334175315!GO:0048522;positive regulation of cellular process;0.00479452559542626!GO:0044433;cytoplasmic vesicle part;0.00481278691578805!GO:0009451;RNA modification;0.00482322956450089!GO:0006268;DNA unwinding during replication;0.00482332813511705!GO:0006740;NADPH regeneration;0.00482332813511705!GO:0006098;pentose-phosphate shunt;0.00482332813511705!GO:0044438;microbody part;0.00485276690019747!GO:0044439;peroxisomal part;0.00485276690019747!GO:0006383;transcription from RNA polymerase III promoter;0.00504393972798868!GO:0030880;RNA polymerase complex;0.0050800041581683!GO:0043596;nuclear replication fork;0.00525469179491376!GO:0005791;rough endoplasmic reticulum;0.00529055974030079!GO:0043284;biopolymer biosynthetic process;0.00536933041817808!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00538794110330753!GO:0045047;protein targeting to ER;0.00538794110330753!GO:0031124;mRNA 3'-end processing;0.005433155441812!GO:0030133;transport vesicle;0.00547600087056012!GO:0044275;cellular carbohydrate catabolic process;0.00551336014620749!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00558913510720285!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.005713592141557!GO:0030660;Golgi-associated vesicle membrane;0.00573860953753894!GO:0007017;microtubule-based process;0.00613009555968063!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00614936994895144!GO:0030521;androgen receptor signaling pathway;0.00614936994895144!GO:0012506;vesicle membrane;0.0064734353486845!GO:0016251;general RNA polymerase II transcription factor activity;0.00647389478535281!GO:0006767;water-soluble vitamin metabolic process;0.00661151575929999!GO:0031903;microbody membrane;0.00666576380584646!GO:0005778;peroxisomal membrane;0.00666576380584646!GO:0015631;tubulin binding;0.00670678561235035!GO:0008022;protein C-terminus binding;0.00681525813552309!GO:0006733;oxidoreduction coenzyme metabolic process;0.00716634842687787!GO:0051087;chaperone binding;0.00729599245537715!GO:0007093;mitotic cell cycle checkpoint;0.00780042570282696!GO:0005637;nuclear inner membrane;0.00786980252861871!GO:0007243;protein kinase cascade;0.00850069735520121!GO:0048487;beta-tubulin binding;0.00857464132578376!GO:0006950;response to stress;0.00895565981993438!GO:0006644;phospholipid metabolic process;0.00906040143290795!GO:0005758;mitochondrial intermembrane space;0.00914278920725801!GO:0045045;secretory pathway;0.00921919229247465!GO:0000228;nuclear chromosome;0.00941213149566558!GO:0006749;glutathione metabolic process;0.00941213149566558!GO:0030663;COPI coated vesicle membrane;0.00941213149566558!GO:0030126;COPI vesicle coat;0.00941213149566558!GO:0032594;protein transport within lipid bilayer;0.00941213149566558!GO:0032907;transforming growth factor-beta3 production;0.00941213149566558!GO:0032596;protein transport into lipid raft;0.00941213149566558!GO:0032910;regulation of transforming growth factor-beta3 production;0.00941213149566558!GO:0032595;B cell receptor transport within lipid bilayer;0.00941213149566558!GO:0033606;chemokine receptor transport within lipid bilayer;0.00941213149566558!GO:0032600;chemokine receptor transport out of lipid raft;0.00941213149566558!GO:0032599;protein transport out of lipid raft;0.00941213149566558!GO:0032597;B cell receptor transport into lipid raft;0.00941213149566558!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.00941213149566558!GO:0003702;RNA polymerase II transcription factor activity;0.00947766385950399!GO:0006144;purine base metabolic process;0.00953320812071204!GO:0016481;negative regulation of transcription;0.00960968617307926!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00960968617307926!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00964530325110611!GO:0000428;DNA-directed RNA polymerase complex;0.00964530325110611!GO:0043022;ribosome binding;0.00971143663356917!GO:0003711;transcription elongation regulator activity;0.00975199780437415!GO:0000209;protein polyubiquitination;0.00990491987355528!GO:0016125;sterol metabolic process;0.0100332300578584!GO:0006284;base-excision repair;0.0103576279134203!GO:0030119;AP-type membrane coat adaptor complex;0.0105553518984484!GO:0006400;tRNA modification;0.0106325630452266!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0106636007122817!GO:0006275;regulation of DNA replication;0.0107592382284707!GO:0016197;endosome transport;0.010788901879877!GO:0005905;coated pit;0.0108690962325543!GO:0005832;chaperonin-containing T-complex;0.0108832126925165!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0111171694819481!GO:0004177;aminopeptidase activity;0.0113463290596068!GO:0009303;rRNA transcription;0.0115070527037455!GO:0009112;nucleobase metabolic process;0.0116804648696629!GO:0043488;regulation of mRNA stability;0.0118555112853453!GO:0043487;regulation of RNA stability;0.0118555112853453!GO:0046983;protein dimerization activity;0.0120300113266061!GO:0000339;RNA cap binding;0.0121706491502248!GO:0048519;negative regulation of biological process;0.0122619359204958!GO:0005874;microtubule;0.0124590821698575!GO:0031123;RNA 3'-end processing;0.0125234988477574!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0126471840761886!GO:0004532;exoribonuclease activity;0.0131735348030826!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0131735348030826!GO:0030131;clathrin adaptor complex;0.0131781906100264!GO:0008637;apoptotic mitochondrial changes;0.0137074891005868!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0138222643859627!GO:0004540;ribonuclease activity;0.0145778725142389!GO:0016584;nucleosome positioning;0.0147497064008102!GO:0042393;histone binding;0.014976688493062!GO:0016485;protein processing;0.0151525035540504!GO:0046966;thyroid hormone receptor binding;0.0152284386742653!GO:0006378;mRNA polyadenylation;0.0154185353617494!GO:0006730;one-carbon compound metabolic process;0.0163824682006687!GO:0000096;sulfur amino acid metabolic process;0.0165233726734632!GO:0030134;ER to Golgi transport vesicle;0.0165233726734632!GO:0005876;spindle microtubule;0.0166474751140693!GO:0046519;sphingoid metabolic process;0.0167390920300548!GO:0004674;protein serine/threonine kinase activity;0.0170013329865058!GO:0006376;mRNA splice site selection;0.0170013329865058!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0170013329865058!GO:0008234;cysteine-type peptidase activity;0.0172280985062952!GO:0000792;heterochromatin;0.0174909327480101!GO:0000910;cytokinesis;0.0174909327480101!GO:0008408;3'-5' exonuclease activity;0.017618509963121!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0179944971287239!GO:0016746;transferase activity, transferring acyl groups;0.0180186263650649!GO:0006519;amino acid and derivative metabolic process;0.0180186263650649!GO:0031570;DNA integrity checkpoint;0.0181054013491266!GO:0008632;apoptotic program;0.0181155469896623!GO:0043624;cellular protein complex disassembly;0.0182863131759794!GO:0001889;liver development;0.018326146868015!GO:0000725;recombinational repair;0.0186767605672273!GO:0000724;double-strand break repair via homologous recombination;0.0186767605672273!GO:0051540;metal cluster binding;0.0190140442525105!GO:0051536;iron-sulfur cluster binding;0.0190140442525105!GO:0008538;proteasome activator activity;0.0190489594012716!GO:0003756;protein disulfide isomerase activity;0.019345518223971!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.019345518223971!GO:0000152;nuclear ubiquitin ligase complex;0.0194048315154297!GO:0006289;nucleotide-excision repair;0.0198228760829831!GO:0006739;NADP metabolic process;0.019889989949584!GO:0004576;oligosaccharyl transferase activity;0.0200277376030107!GO:0050794;regulation of cellular process;0.0200367940193543!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0201426778396005!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0202293464528981!GO:0030127;COPII vesicle coat;0.0203366657205999!GO:0012507;ER to Golgi transport vesicle membrane;0.0203366657205999!GO:0042157;lipoprotein metabolic process;0.0203854193364487!GO:0006006;glucose metabolic process;0.0205660022609426!GO:0006518;peptide metabolic process;0.0205660022609426!GO:0016272;prefoldin complex;0.0205753035857717!GO:0000082;G1/S transition of mitotic cell cycle;0.0206017655714744!GO:0032787;monocarboxylic acid metabolic process;0.0210858763615248!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.021227935294031!GO:0030125;clathrin vesicle coat;0.021227935294031!GO:0030665;clathrin coated vesicle membrane;0.021227935294031!GO:0031970;organelle envelope lumen;0.0218340568625508!GO:0006596;polyamine biosynthetic process;0.0224477871558085!GO:0006338;chromatin remodeling;0.0226223504583464!GO:0032200;telomere organization and biogenesis;0.0226223504583464!GO:0000723;telomere maintenance;0.0226223504583464!GO:0051539;4 iron, 4 sulfur cluster binding;0.0226223504583464!GO:0051881;regulation of mitochondrial membrane potential;0.0233777906663002!GO:0008250;oligosaccharyl transferase complex;0.023441975375369!GO:0030132;clathrin coat of coated pit;0.0236975580578534!GO:0005975;carbohydrate metabolic process;0.0237928260603213!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0238051104672596!GO:0009100;glycoprotein metabolic process;0.0239512458727379!GO:0008415;acyltransferase activity;0.0239994458463237!GO:0030518;steroid hormone receptor signaling pathway;0.024007757647314!GO:0006509;membrane protein ectodomain proteolysis;0.0254213017563183!GO:0033619;membrane protein proteolysis;0.0254213017563183!GO:0005784;translocon complex;0.0254213017563183!GO:0008299;isoprenoid biosynthetic process;0.0254676924476625!GO:0031529;ruffle organization and biogenesis;0.0256450783976946!GO:0043601;nuclear replisome;0.0260063555964066!GO:0030894;replisome;0.0260063555964066!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0269966068441674!GO:0051338;regulation of transferase activity;0.0269982831293288!GO:0016301;kinase activity;0.0272026193564746!GO:0032984;macromolecular complex disassembly;0.0272587911965901!GO:0006458;'de novo' protein folding;0.0275535474445408!GO:0051084;'de novo' posttranslational protein folding;0.0275535474445408!GO:0043065;positive regulation of apoptosis;0.0276252892788031!GO:0006672;ceramide metabolic process;0.0276384682672279!GO:0030137;COPI-coated vesicle;0.0284177489455856!GO:0008097;5S rRNA binding;0.0290622895303648!GO:0000922;spindle pole;0.0292723736374486!GO:0004680;casein kinase activity;0.0297891918399836!GO:0050681;androgen receptor binding;0.0299826253304093!GO:0051053;negative regulation of DNA metabolic process;0.0303256963266624!GO:0004003;ATP-dependent DNA helicase activity;0.0307411775396592!GO:0016791;phosphoric monoester hydrolase activity;0.0307411775396592!GO:0007010;cytoskeleton organization and biogenesis;0.0318061239666!GO:0051128;regulation of cellular component organization and biogenesis;0.0328158545921422!GO:0007034;vacuolar transport;0.0331242598796994!GO:0005869;dynactin complex;0.0333272885045791!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.033355425644138!GO:0016407;acetyltransferase activity;0.0334211455024741!GO:0019206;nucleoside kinase activity;0.0341726162311672!GO:0031625;ubiquitin protein ligase binding;0.0342413029887013!GO:0001836;release of cytochrome c from mitochondria;0.0344701589905034!GO:0006979;response to oxidative stress;0.0349534633100464!GO:0000178;exosome (RNase complex);0.0352187260580115!GO:0043068;positive regulation of programmed cell death;0.0358497972998914!GO:0005669;transcription factor TFIID complex;0.0360807630438761!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0361076459676689!GO:0010257;NADH dehydrogenase complex assembly;0.0361076459676689!GO:0033108;mitochondrial respiratory chain complex assembly;0.0361076459676689!GO:0015036;disulfide oxidoreductase activity;0.036388114607764!GO:0006367;transcription initiation from RNA polymerase II promoter;0.036388114607764!GO:0006301;postreplication repair;0.0367419885418129!GO:0006984;ER-nuclear signaling pathway;0.0367895143687085!GO:0043189;H4/H2A histone acetyltransferase complex;0.0374447986496829!GO:0006769;nicotinamide metabolic process;0.0378784417957195!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0388325354975529!GO:0030742;GTP-dependent protein binding;0.0390230072051631!GO:0007004;telomere maintenance via telomerase;0.0390934205596916!GO:0016408;C-acyltransferase activity;0.0396946898560546!GO:0030911;TPR domain binding;0.0399971652289366!GO:0000738;DNA catabolic process, exonucleolytic;0.0404857408804462!GO:0006270;DNA replication initiation;0.0412601535676788!GO:0048146;positive regulation of fibroblast proliferation;0.041447524916495!GO:0050790;regulation of catalytic activity;0.0414846310594965!GO:0032259;methylation;0.0415476394833941!GO:0008180;signalosome;0.0415707815999712!GO:0000819;sister chromatid segregation;0.0425978338402592!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0428743119214932!GO:0006096;glycolysis;0.0434733546508128!GO:0042026;protein refolding;0.043640934513853!GO:0043241;protein complex disassembly;0.0436832078679892!GO:0008426;protein kinase C inhibitor activity;0.0438148234150331!GO:0017134;fibroblast growth factor binding;0.0442513227936536!GO:0016311;dephosphorylation;0.0443817248622453!GO:0000070;mitotic sister chromatid segregation;0.0446185560498401!GO:0022406;membrane docking;0.045047841523606!GO:0048278;vesicle docking;0.045047841523606!GO:0006631;fatty acid metabolic process;0.045047841523606!GO:0008537;proteasome activator complex;0.0450519387279493!GO:0035267;NuA4 histone acetyltransferase complex;0.0450989386791813!GO:0006417;regulation of translation;0.0453179178804011!GO:0043549;regulation of kinase activity;0.0455583150028433!GO:0051085;chaperone cofactor-dependent protein folding;0.0458857264694247!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0460250115678991!GO:0006904;vesicle docking during exocytosis;0.0460870332720888!GO:0005095;GTPase inhibitor activity;0.0466071641886028!GO:0017166;vinculin binding;0.0466716340967133!GO:0004448;isocitrate dehydrogenase activity;0.0466842085117985!GO:0016052;carbohydrate catabolic process;0.0466842085117985!GO:0008017;microtubule binding;0.0466842085117985!GO:0016835;carbon-oxygen lyase activity;0.0470501081111559!GO:0032507;maintenance of cellular protein localization;0.047368651640197!GO:0019362;pyridine nucleotide metabolic process;0.0474544628939862!GO:0000790;nuclear chromatin;0.0474787111686355!GO:0043414;biopolymer methylation;0.0475328718847165!GO:0043154;negative regulation of caspase activity;0.0475328718847165!GO:0031647;regulation of protein stability;0.047834601764648!GO:0030036;actin cytoskeleton organization and biogenesis;0.048105753521771!GO:0000030;mannosyltransferase activity;0.0482540983480548!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0484841672727686!GO:0006081;aldehyde metabolic process;0.049200194221396!GO:0005732;small nucleolar ribonucleoprotein complex;0.0495785193335364!GO:0009116;nucleoside metabolic process;0.0495785193335364!GO:0000726;non-recombinational repair;0.0496237887961014 | |||
|sample_id=10483 | |sample_id=10483 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=stomach | |sample_tissue=stomach | ||
|top_motifs=HNF4A_NR2F1,2:3.35518021202;HNF1A:2.83224406331;ZEB1:2.43951935814;SNAI1..3:2.33052860172;ADNP_IRX_SIX_ZHX:2.1580211538;FOX{F1,F2,J1}:2.06941365032;MYOD1:1.84089532293;LMO2:1.52455256578;NR5A1,2:1.39024639023;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.34638116537;VSX1,2:1.27838474329;RBPJ:1.23763180064;HOX{A5,B5}:1.02875623544;HOX{A6,A7,B6,B7}:1.0079022234;E2F1..5:0.974982595284;ZNF148:0.918132025395;FOXQ1:0.914984265607;NFE2L2:0.8611961989;ELK1,4_GABP{A,B1}:0.855029080854;T:0.807156264;STAT5{A,B}:0.794647170038;NKX3-2:0.788536019272;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.755788228552;GATA6:0.70100697363;TFCP2:0.687342328559;bHLH_family:0.669373845718;LEF1_TCF7_TCF7L1,2:0.663790294276;NANOG:0.627366724493;ESR1:0.608308358262;ESRRA:0.592125191407;NFY{A,B,C}:0.545959181841;PAX8:0.506223317502;XCPE1{core}:0.505745735538;RFX2..5_RFXANK_RFXAP:0.500496945622;YY1:0.440649291343;POU2F1..3:0.429846954293;PDX1:0.428686962789;ELF1,2,4:0.423015543231;TBX4,5:0.398563259235;NR6A1:0.395260690499;POU5F1:0.38351535444;MYB:0.381920616335;PITX1..3:0.356537898805;SOX2:0.321039021995;ATF5_CREB3:0.320926649827;CDC5L:0.314582068807;ZNF423:0.31378255987;NFE2:0.286528007286;HES1:0.28296614998;FOX{I1,J2}:0.280895514011;RXRA_VDR{dimer}:0.276522665203;NKX2-3_NKX2-5:0.274278309503;EBF1:0.250723400068;CUX2:0.238848486742;PBX1:0.230873087243;TP53:0.229766758368;FOXN1:0.219112925645;SOX5:0.171679475246;DBP:0.163383120475;FOXA2:0.160805597799;TEAD1:0.153093197282;IRF7:0.137721599542;IKZF1:0.130178364747;LHX3,4:0.1277971827;BACH2:0.124605028361;CDX1,2,4:0.107108181529;FOS_FOS{B,L1}_JUN{B,D}:0.0924345662643;CRX:0.092354281427;FOXL1:0.085656706444;SOX{8,9,10}:0.0503955260214;TLX1..3_NFIC{dimer}:0.0415836996556;FOX{D1,D2}:0.0414223304096;NKX6-1,2:0.0313082564354;FOSL2:0.0244955406995;NFIL3:0.0208069490417;ZBTB16:0.000358094370418;BREu{core}:-0.00703061078785;ATF4:-0.015445923431;GFI1:-0.0191183456143;FOXP1:-0.021574942089;TFDP1:-0.0249934626782;ONECUT1,2:-0.0331080067611;SP1:-0.0361272412881;FOXM1:-0.040670769313;PAX5:-0.0433144180286;BPTF:-0.0523265682797;NRF1:-0.0636146232847;POU6F1:-0.088209824991;MED-1{core}:-0.101237036471;MTF1:-0.11187423737;HIC1:-0.116048284742;FOXD3:-0.140940262846;HAND1,2:-0.166747424595;RORA:-0.185745566451;TBP:-0.204315766604;FOXO1,3,4:-0.214518646813;EP300:-0.216256446723;POU1F1:-0.248725343323;MAZ:-0.250628825891;MEF2{A,B,C,D}:-0.253256649392;AIRE:-0.264680548455;EN1,2:-0.276218062891;NFKB1_REL_RELA:-0.280730496319;ETS1,2:-0.280909682076;ZNF143:-0.290162596636;HLF:-0.316914586289;ARID5B:-0.319329877182;ATF2:-0.325960520894;TFAP2{A,C}:-0.330702877009;ZFP161:-0.344791849113;AR:-0.348102864124;PAX2:-0.352866126571;ALX1:-0.359973630047;SPI1:-0.362643891778;PPARG:-0.370939289045;SOX17:-0.375099143351;TOPORS:-0.380059477402;EGR1..3:-0.387455698272;TEF:-0.403732170751;NR1H4:-0.412092941577;RFX1:-0.414724347293;ALX4:-0.430993036255;PRRX1,2:-0.434694187767;OCT4_SOX2{dimer}:-0.456777203209;NKX2-1,4:-0.477910944266;ATF6:-0.481250181394;HOXA9_MEIS1:-0.48280059426;PAX6:-0.487748923336;DMAP1_NCOR{1,2}_SMARC:-0.492055740949;KLF4:-0.529057698992;IRF1,2:-0.529465140003;TFAP2B:-0.534567894834;EVI1:-0.535583703602;PAX4:-0.559886536637;CEBPA,B_DDIT3:-0.561504659748;RREB1:-0.567778153611;JUN:-0.573378075191;ZBTB6:-0.581067097924;SREBF1,2:-0.583960320672;SPIB:-0.589673735308;FOXP3:-0.592679251432;GLI1..3:-0.598166691284;GFI1B:-0.626741175063;GTF2I:-0.650096393099;HSF1,2:-0.660509887303;HMX1:-0.695940954684;PATZ1:-0.697207770989;NR3C1:-0.719786364343;UFEwm:-0.726392587823;RUNX1..3:-0.744138488042;REST:-0.753290486885;PAX3,7:-0.75575924602;MYFfamily:-0.775625557837;NHLH1,2:-0.785567737157;CREB1:-0.802670980992;ZIC1..3:-0.813464251657;STAT2,4,6:-0.814493513349;TAL1_TCF{3,4,12}:-0.817037057199;AHR_ARNT_ARNT2:-0.819146884572;POU3F1..4:-0.836240608025;XBP1:-0.860552624282;HOX{A4,D4}:-0.895624990432;SPZ1:-0.917170488046;IKZF2:-0.917819602492;STAT1,3:-0.94660727406;MTE{core}:-1.02354250915;NKX2-2,8:-1.02853564258;MYBL2:-1.04335709222;MAFB:-1.05390455292;HMGA1,2:-1.08779097478;TGIF1:-1.09724605002;GTF2A1,2:-1.19316359914;MZF1:-1.21199062931;TFAP4:-1.22893876484;HBP1_HMGB_SSRP1_UBTF:-1.23286906799;SRF:-1.26435069296;ZNF238:-1.28746916534;TLX2:-1.31854709487;NFIX:-1.32772152361;GCM1,2:-1.34626313543;PRDM1:-1.39168064047;GZF1:-1.41990780711;ZNF384:-1.42556930831;HIF1A:-1.44565234037;RXR{A,B,G}:-1.44626438484;NANOG{mouse}:-1.49112136342;NFATC1..3:-1.54704922807;SMAD1..7,9:-1.57241520968;PAX1,9:-1.65035542365;NFE2L1:-1.67718572849;NKX3-1:-1.73843949205;GATA4:-1.89824741523 | |top_motifs=HNF4A_NR2F1,2:3.35518021202;HNF1A:2.83224406331;ZEB1:2.43951935814;SNAI1..3:2.33052860172;ADNP_IRX_SIX_ZHX:2.1580211538;FOX{F1,F2,J1}:2.06941365032;MYOD1:1.84089532293;LMO2:1.52455256578;NR5A1,2:1.39024639023;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.34638116537;VSX1,2:1.27838474329;RBPJ:1.23763180064;HOX{A5,B5}:1.02875623544;HOX{A6,A7,B6,B7}:1.0079022234;E2F1..5:0.974982595284;ZNF148:0.918132025395;FOXQ1:0.914984265607;NFE2L2:0.8611961989;ELK1,4_GABP{A,B1}:0.855029080854;T:0.807156264;STAT5{A,B}:0.794647170038;NKX3-2:0.788536019272;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.755788228552;GATA6:0.70100697363;TFCP2:0.687342328559;bHLH_family:0.669373845718;LEF1_TCF7_TCF7L1,2:0.663790294276;NANOG:0.627366724493;ESR1:0.608308358262;ESRRA:0.592125191407;NFY{A,B,C}:0.545959181841;PAX8:0.506223317502;XCPE1{core}:0.505745735538;RFX2..5_RFXANK_RFXAP:0.500496945622;YY1:0.440649291343;POU2F1..3:0.429846954293;PDX1:0.428686962789;ELF1,2,4:0.423015543231;TBX4,5:0.398563259235;NR6A1:0.395260690499;POU5F1:0.38351535444;MYB:0.381920616335;PITX1..3:0.356537898805;SOX2:0.321039021995;ATF5_CREB3:0.320926649827;CDC5L:0.314582068807;ZNF423:0.31378255987;NFE2:0.286528007286;HES1:0.28296614998;FOX{I1,J2}:0.280895514011;RXRA_VDR{dimer}:0.276522665203;NKX2-3_NKX2-5:0.274278309503;EBF1:0.250723400068;CUX2:0.238848486742;PBX1:0.230873087243;TP53:0.229766758368;FOXN1:0.219112925645;SOX5:0.171679475246;DBP:0.163383120475;FOXA2:0.160805597799;TEAD1:0.153093197282;IRF7:0.137721599542;IKZF1:0.130178364747;LHX3,4:0.1277971827;BACH2:0.124605028361;CDX1,2,4:0.107108181529;FOS_FOS{B,L1}_JUN{B,D}:0.0924345662643;CRX:0.092354281427;FOXL1:0.085656706444;SOX{8,9,10}:0.0503955260214;TLX1..3_NFIC{dimer}:0.0415836996556;FOX{D1,D2}:0.0414223304096;NKX6-1,2:0.0313082564354;FOSL2:0.0244955406995;NFIL3:0.0208069490417;ZBTB16:0.000358094370418;BREu{core}:-0.00703061078785;ATF4:-0.015445923431;GFI1:-0.0191183456143;FOXP1:-0.021574942089;TFDP1:-0.0249934626782;ONECUT1,2:-0.0331080067611;SP1:-0.0361272412881;FOXM1:-0.040670769313;PAX5:-0.0433144180286;BPTF:-0.0523265682797;NRF1:-0.0636146232847;POU6F1:-0.088209824991;MED-1{core}:-0.101237036471;MTF1:-0.11187423737;HIC1:-0.116048284742;FOXD3:-0.140940262846;HAND1,2:-0.166747424595;RORA:-0.185745566451;TBP:-0.204315766604;FOXO1,3,4:-0.214518646813;EP300:-0.216256446723;POU1F1:-0.248725343323;MAZ:-0.250628825891;MEF2{A,B,C,D}:-0.253256649392;AIRE:-0.264680548455;EN1,2:-0.276218062891;NFKB1_REL_RELA:-0.280730496319;ETS1,2:-0.280909682076;ZNF143:-0.290162596636;HLF:-0.316914586289;ARID5B:-0.319329877182;ATF2:-0.325960520894;TFAP2{A,C}:-0.330702877009;ZFP161:-0.344791849113;AR:-0.348102864124;PAX2:-0.352866126571;ALX1:-0.359973630047;SPI1:-0.362643891778;PPARG:-0.370939289045;SOX17:-0.375099143351;TOPORS:-0.380059477402;EGR1..3:-0.387455698272;TEF:-0.403732170751;NR1H4:-0.412092941577;RFX1:-0.414724347293;ALX4:-0.430993036255;PRRX1,2:-0.434694187767;OCT4_SOX2{dimer}:-0.456777203209;NKX2-1,4:-0.477910944266;ATF6:-0.481250181394;HOXA9_MEIS1:-0.48280059426;PAX6:-0.487748923336;DMAP1_NCOR{1,2}_SMARC:-0.492055740949;KLF4:-0.529057698992;IRF1,2:-0.529465140003;TFAP2B:-0.534567894834;EVI1:-0.535583703602;PAX4:-0.559886536637;CEBPA,B_DDIT3:-0.561504659748;RREB1:-0.567778153611;JUN:-0.573378075191;ZBTB6:-0.581067097924;SREBF1,2:-0.583960320672;SPIB:-0.589673735308;FOXP3:-0.592679251432;GLI1..3:-0.598166691284;GFI1B:-0.626741175063;GTF2I:-0.650096393099;HSF1,2:-0.660509887303;HMX1:-0.695940954684;PATZ1:-0.697207770989;NR3C1:-0.719786364343;UFEwm:-0.726392587823;RUNX1..3:-0.744138488042;REST:-0.753290486885;PAX3,7:-0.75575924602;MYFfamily:-0.775625557837;NHLH1,2:-0.785567737157;CREB1:-0.802670980992;ZIC1..3:-0.813464251657;STAT2,4,6:-0.814493513349;TAL1_TCF{3,4,12}:-0.817037057199;AHR_ARNT_ARNT2:-0.819146884572;POU3F1..4:-0.836240608025;XBP1:-0.860552624282;HOX{A4,D4}:-0.895624990432;SPZ1:-0.917170488046;IKZF2:-0.917819602492;STAT1,3:-0.94660727406;MTE{core}:-1.02354250915;NKX2-2,8:-1.02853564258;MYBL2:-1.04335709222;MAFB:-1.05390455292;HMGA1,2:-1.08779097478;TGIF1:-1.09724605002;GTF2A1,2:-1.19316359914;MZF1:-1.21199062931;TFAP4:-1.22893876484;HBP1_HMGB_SSRP1_UBTF:-1.23286906799;SRF:-1.26435069296;ZNF238:-1.28746916534;TLX2:-1.31854709487;NFIX:-1.32772152361;GCM1,2:-1.34626313543;PRDM1:-1.39168064047;GZF1:-1.41990780711;ZNF384:-1.42556930831;HIF1A:-1.44565234037;RXR{A,B,G}:-1.44626438484;NANOG{mouse}:-1.49112136342;NFATC1..3:-1.54704922807;SMAD1..7,9:-1.57241520968;PAX1,9:-1.65035542365;NFE2L1:-1.67718572849;NKX3-1:-1.73843949205;GATA4:-1.89824741523 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10483-107A6;search_select_hide=table117:FF:10483-107A6 | |||
}} | }} | ||
Latest revision as of 14:26, 3 June 2020
| Name: | signet ring carcinoma cell line:NUGC-4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11270 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11270
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11270
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.136 |
| 10 | 10 | 0.269 |
| 100 | 100 | 0.46 |
| 101 | 101 | 0.199 |
| 102 | 102 | 0.591 |
| 103 | 103 | 0.73 |
| 104 | 104 | 0.606 |
| 105 | 105 | 0.251 |
| 106 | 106 | 0.31 |
| 107 | 107 | 0.239 |
| 108 | 108 | 0.652 |
| 109 | 109 | 0.00899 |
| 11 | 11 | 0.634 |
| 110 | 110 | 0.446 |
| 111 | 111 | 0.915 |
| 112 | 112 | 0.925 |
| 113 | 113 | 0.759 |
| 114 | 114 | 0.823 |
| 115 | 115 | 0.834 |
| 116 | 116 | 0.537 |
| 117 | 117 | 0.0891 |
| 118 | 118 | 0.294 |
| 119 | 119 | 0.17 |
| 12 | 12 | 0.518 |
| 120 | 120 | 0.0922 |
| 121 | 121 | 0.404 |
| 122 | 122 | 0.132 |
| 123 | 123 | 0.548 |
| 124 | 124 | 0.398 |
| 125 | 125 | 0.0899 |
| 126 | 126 | 0.381 |
| 127 | 127 | 0.529 |
| 128 | 128 | 0.51 |
| 129 | 129 | 0.0435 |
| 13 | 13 | 0.00618 |
| 130 | 130 | 0.943 |
| 131 | 131 | 0.126 |
| 132 | 132 | 0.519 |
| 133 | 133 | 0.0139 |
| 134 | 134 | 0.0392 |
| 135 | 135 | 0.0137 |
| 136 | 136 | 0.00241 |
| 137 | 137 | 0.0797 |
| 138 | 138 | 0.931 |
| 139 | 139 | 0.0906 |
| 14 | 14 | 0.919 |
| 140 | 140 | 0.907 |
| 141 | 141 | 0.794 |
| 142 | 142 | 0.993 |
| 143 | 143 | 0.0125 |
| 144 | 144 | 0.315 |
| 145 | 145 | 0.781 |
| 146 | 146 | 0.0961 |
| 147 | 147 | 0.703 |
| 148 | 148 | 0.157 |
| 149 | 149 | 0.949 |
| 15 | 15 | 0.152 |
| 150 | 150 | 0.636 |
| 151 | 151 | 0.288 |
| 152 | 152 | 0.279 |
| 153 | 153 | 0.323 |
| 154 | 154 | 0.512 |
| 155 | 155 | 0.209 |
| 156 | 156 | 0.335 |
| 157 | 157 | 0.391 |
| 158 | 158 | 0.905 |
| 159 | 159 | 0.943 |
| 16 | 16 | 0.146 |
| 160 | 160 | 0.743 |
| 161 | 161 | 0.357 |
| 162 | 162 | 0.652 |
| 163 | 163 | 0.751 |
| 164 | 164 | 0.361 |
| 165 | 165 | 0.994 |
| 166 | 166 | 0.842 |
| 167 | 167 | 0.397 |
| 168 | 168 | 0.856 |
| 169 | 169 | 0.012 |
| 17 | 17 | 0.372 |
| 18 | 18 | 0.101 |
| 19 | 19 | 0.816 |
| 2 | 2 | 0.732 |
| 20 | 20 | 0.488 |
| 21 | 21 | 0.27 |
| 22 | 22 | 0.596 |
| 23 | 23 | 0.641 |
| 24 | 24 | 0.0717 |
| 25 | 25 | 0.61 |
| 26 | 26 | 0.00379 |
| 27 | 27 | 0.695 |
| 28 | 28 | 0.43 |
| 29 | 29 | 0.154 |
| 3 | 3 | 0.78 |
| 30 | 30 | 0.534 |
| 31 | 31 | 0.767 |
| 32 | 32 | 0.524 |
| 33 | 33 | 0.386 |
| 34 | 34 | 0.549 |
| 35 | 35 | 0.691 |
| 36 | 36 | 0.267 |
| 37 | 37 | 0.539 |
| 38 | 38 | 0.299 |
| 39 | 39 | 0.419 |
| 4 | 4 | 0.445 |
| 40 | 40 | 0.0787 |
| 41 | 41 | 0.151 |
| 42 | 42 | 0.528 |
| 43 | 43 | 0.787 |
| 44 | 44 | 0.473 |
| 45 | 45 | 0.537 |
| 46 | 46 | 0.657 |
| 47 | 47 | 0.279 |
| 48 | 48 | 0.488 |
| 49 | 49 | 0.773 |
| 5 | 5 | 0.636 |
| 50 | 50 | 0.359 |
| 51 | 51 | 0.809 |
| 52 | 52 | 0.532 |
| 53 | 53 | 0.829 |
| 54 | 54 | 0.713 |
| 55 | 55 | 0.825 |
| 56 | 56 | 0.481 |
| 57 | 57 | 0.428 |
| 58 | 58 | 0.523 |
| 59 | 59 | 0.551 |
| 6 | 6 | 0.295 |
| 60 | 60 | 0.362 |
| 61 | 61 | 0.105 |
| 62 | 62 | 0.916 |
| 63 | 63 | 0.131 |
| 64 | 64 | 0.496 |
| 65 | 65 | 0.895 |
| 66 | 66 | 0.138 |
| 67 | 67 | 0.354 |
| 68 | 68 | 0.115 |
| 69 | 69 | 0.116 |
| 7 | 7 | 0.049 |
| 70 | 70 | 0.909 |
| 71 | 71 | 0.293 |
| 72 | 72 | 0.634 |
| 73 | 73 | 0.193 |
| 74 | 74 | 0.945 |
| 75 | 75 | 0.137 |
| 76 | 76 | 0.819 |
| 77 | 77 | 0.0536 |
| 78 | 78 | 2.92064e-5 |
| 79 | 79 | 0.4 |
| 8 | 8 | 0.389 |
| 80 | 80 | 0.467 |
| 81 | 81 | 0.127 |
| 82 | 82 | 0.511 |
| 83 | 83 | 0.424 |
| 84 | 84 | 0.486 |
| 85 | 85 | 0.901 |
| 86 | 86 | 0.857 |
| 87 | 87 | 0.0518 |
| 88 | 88 | 0.843 |
| 89 | 89 | 0.238 |
| 9 | 9 | 0.99 |
| 90 | 90 | 0.885 |
| 91 | 91 | 0.0101 |
| 92 | 92 | 0.48 |
| 93 | 93 | 0.615 |
| 94 | 94 | 0.079 |
| 95 | 95 | 0.0847 |
| 96 | 96 | 0.388 |
| 97 | 97 | 0.713 |
| 98 | 98 | 0.488 |
| 99 | 99 | 0.403 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11270
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3493 signet ring cell adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3493 (signet ring cell adenocarcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
