FF:11539-120A9: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (25 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005491 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005491 | ||
|accession_numbers=CAGE;DRX008357;DRR009229;DRZ000654;DRZ002039;DRZ012004;DRZ013389 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037060;DRR041426;DRZ007068 | |||
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000094,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11539-120A9 | |id=FF:11539-120A9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000094 | ||
|is_obsolete= | |||
|library_id=CNhs11347 | |||
|library_id_phase_based=2:CNhs11347 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11539 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.CAGATC.11539 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11539 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.CAGATC.11539 | |||
|name=Mesenchymal Stem Cells - umbilical, donor1 | |name=Mesenchymal Stem Cells - umbilical, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11347,LSID769,release014,COMPLETED | |profile_hcage=CNhs11347,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.158838685789796,0,0.292375452321884,-0.188273855757915,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266280009938255,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.176716241534893,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0282851059324795,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0605105680257882,0.159578357938091,0,0,0.209589398324973,0.226664755489422,0,0.188259409638053,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.188259409638053,0,0,0.187497036854104,0.495302227826798,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0.319156715876182,0,0,0.188259409638053,0,0,0.0719778405906179,0.0110916272053126,-0.474086218752008,-0.143515142523472,0,0,-0.239019677271518,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,0.140228953509398,-0.0683442610773682,0,0,0,0,0.190123789582857,0,-0.120879483793741,-0.0827201683234173,-0.0333521784647541,0.0253008091079772,-0.0230404004485518,0,0,0,-0.055908588150829,-0.44864132887749,0,0,0.257218645324851,-0.181349618560659,0,0,-0.391044581551635,0,0.108272853910245,0.0672103043959378,0,-0.220696852341536,0,0,0,0,0,0,0,0,0,0,0,0.416571905775562,-0.326988596678969,0,0,0.188259409638053,0,0.0492806777082802,0,0,0.255687873361247,0.284789670746829,-0.037948355649397,0.107907151633844,0,-0.302389727009913,-0.147023004781658,0.388266069953602,-0.150452938988514,0.622240880143453,0.579661009964744,0.0321264105490481,0.0694336390921617,0.119743356879648,0,0.199997921323391,-0.0302447930437535,0.574392013135212,-0.0795648707678569,0,0,0,-0.345540766950747,0,0,0.444217181961013,-0.0910582215690605,0.095389230394755,0.255174363125459,0.261629840747118,0.0937290100919104,-0.0395325284566706,0.385723894750173,0,0.517782231643297,0,0.188259409638053,-0.0337353871528274,0.0286666708612325,0.0220432156403089,0.0131478561391352,0,0.0857601227044174,-0.0683442610773682,0,-0.178845514728847,0.285219999178177,0,0.0846803556519798,-0.00903964635601395,0,0,-0.126577566423306,0,0,0.11224336809136,-0.220335427153984,0.0863011543206376,0,0.085845612950752,-0.271439369319039,-0.20315637553356,0,-0.0743019438835345,0,0,0.259368163373488,0,-0.0375586385264745,-0.126924284432715,0.498335753779262,0.453329510978844,0.260709889064357,-0.411315217899549,-0.0794066224325114,0.209589398324973,-0.287813967242545,0,1.21272411419714,0,-0.254570721200566,-0.679498131621524,0.0668820972487798,-0.0824040066818906,0.137583385031462,-0.0492494774999876,0,-0.435891179976775,0,0.0543657657709157,-0.352174341835187,-0.439289374580686,-0.523423929692796,0,0.0897422183457302,-0.0605105680257882,0.134817030318159,0.0163134600051833,0,0,0.0378923263034133,-0.3785392506364,-0.117520723045563,-0.0448597518601683,0,0.0530801892571113,0.319156715876182,0,-0.019769751290449,-0.235476037764389,0,0.430601345853468,0.11841745553479,0.271508275175287,0.0722883362031186,0.188259409638053,0,0.533511287520096,0,0.419603020286682,0.121692305930155,0.319703349868511,-0.431523914320581,0.0658303743894267,0,0.101178700689085,0,0,0.010731643672877,0.188259409638053,0.170689867040831,0,0,-0.061621886960771,0,0,0,0,-0.101135985738738,0,0,0,0,0,0,0,-0.40690966622447,0.146292567331233,0,0,0,0,0,0,0,-0.129406115216345,0,0,-0.103157493092869,0.0088440162423963,-0.12301741567642,0,0,0,0,0.103433313322708,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,0.130528952584389,0.293734385413972,0,0,0,-0.27695440160179,0,0,0,0,-0.266050291923805,0,0,0.211230174260388,0,0.22983652144066,-0.0815818795468414,0,-0.303390258630954,0.607187157008672,0.262735928669308,0,0,-0.261347131789888,0,0,-0.266301592118656,0.205073848302576,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.00439424355655005,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.0426489796685376,0,0,0,0,0,0,0,0,0.0296999578844389,0,0,0,0,0,-0.0969923612426051,0,0.188259409638053,0,0,-0.376547711515831,0,0,0.292375452321884,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.436620241040306,0,0,0,0,0,0,0,0.0443234176700919,0,0,0,0,0.0743750359290755,0,0,0,-0.104796384789156,0,0.158838685789796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376318750537301,0.16009366598301,0,0,0,0,0.0522404396246575,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188259409638053,0,0,0,0,0,0,-0.061367927484915,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.193847135837683,0.681692088171976,0.01343512699026,0,0,0,0.105192785455636,0,0,0.0662871726392144,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266280009938255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209801510143341,0,0,0,0,0.0941297048190265,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.024826820018991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164308717565003,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270934640637128,0,0.234780083646155,0,0,0,0,0,0,0,0,0,0,0,0.188259409638053,0,0,0,0,-0.23134732663953,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.418500695579169,0,0,0,0,0,0,0,0,0,0,0,0,0.126939230487926,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0.188259409638053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217908765243615,0.495302227826798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941297048190265,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.144922565964057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222763928897164,0,0,0,0,0,0,0,0,0.188259409638053,0,0.188259409638053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188259409638053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0933265344873335,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25056294877384,0,0,0,0.108517410973075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0441917222974399,0.0941297048190265,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0715024826443753,0,0,-0.0422874684771159,0,0.174585899891688,-0.0181263002827975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.043208797604868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,-0.0507892721012485,0.0225283317646675,0,0.000929021243460143,0.237487434964991,0,0,-0.0367311208382308,0,0,-0.174992895090299,-0.270883338247659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188259409638053,0,0.131400463475454,0.500167093920022,0,0.0407667659362583,0,0,0.519455473096083,0,0,0,-0.0959594073735869 | |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC7535 | |rna_catalog_number=SC7535 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120A9 | |rna_tube_id=120A9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.CAGATC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.97658273835324e-231!GO:0005737;cytoplasm;2.89145540510867e-164!GO:0043231;intracellular membrane-bound organelle;4.93225413389711e-146!GO:0043227;membrane-bound organelle;8.45970812142454e-146!GO:0043226;organelle;2.25189764243709e-141!GO:0043229;intracellular organelle;4.66277528751233e-141!GO:0044444;cytoplasmic part;3.73300860138105e-130!GO:0044422;organelle part;6.8739532439743e-102!GO:0044446;intracellular organelle part;1.59020042744689e-100!GO:0044237;cellular metabolic process;3.59473365483944e-78!GO:0044238;primary metabolic process;8.87806760199927e-76!GO:0030529;ribonucleoprotein complex;1.47973303164511e-71!GO:0005739;mitochondrion;1.08586395422304e-64!GO:0043170;macromolecule metabolic process;1.08586395422304e-64!GO:0032991;macromolecular complex;2.97100886795043e-64!GO:0043233;organelle lumen;1.44712794357402e-58!GO:0031974;membrane-enclosed lumen;1.44712794357402e-58!GO:0005515;protein binding;2.64793490870114e-57!GO:0003723;RNA binding;2.59605281488516e-49!GO:0031090;organelle membrane;3.21780467265824e-48!GO:0005840;ribosome;9.25336703176619e-48!GO:0044428;nuclear part;2.63595887535367e-46!GO:0009058;biosynthetic process;8.16000944354336e-44!GO:0019538;protein metabolic process;1.07354652606819e-43!GO:0006412;translation;2.31283145568667e-43!GO:0044429;mitochondrial part;1.04379171458333e-42!GO:0003735;structural constituent of ribosome;2.36378319800359e-42!GO:0005634;nucleus;3.99389634993381e-42!GO:0044249;cellular biosynthetic process;6.74398143545169e-41!GO:0044260;cellular macromolecule metabolic process;9.91464062745075e-40!GO:0044267;cellular protein metabolic process;9.00062779979815e-39!GO:0009059;macromolecule biosynthetic process;3.68179820142809e-37!GO:0033279;ribosomal subunit;1.11649068465158e-36!GO:0015031;protein transport;6.5753036256094e-34!GO:0031967;organelle envelope;1.30037823599603e-33!GO:0005829;cytosol;1.64040675849052e-33!GO:0031975;envelope;2.75496991992321e-33!GO:0006396;RNA processing;3.00697081484316e-33!GO:0033036;macromolecule localization;4.01082864872923e-33!GO:0010467;gene expression;5.26217852137267e-33!GO:0045184;establishment of protein localization;2.49147917077447e-31!GO:0031981;nuclear lumen;4.4521259082379e-31!GO:0008104;protein localization;5.96269500261738e-31!GO:0016043;cellular component organization and biogenesis;8.72184491045827e-30!GO:0005740;mitochondrial envelope;1.49619157009182e-29!GO:0043283;biopolymer metabolic process;2.22196560488111e-29!GO:0043234;protein complex;1.63250441440977e-28!GO:0016071;mRNA metabolic process;2.72906555574108e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.2935515500534e-28!GO:0031966;mitochondrial membrane;1.01153995251392e-27!GO:0019866;organelle inner membrane;3.08122273034929e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.44716102226396e-25!GO:0005743;mitochondrial inner membrane;2.27716338675526e-25!GO:0008380;RNA splicing;4.93262293621137e-25!GO:0006397;mRNA processing;5.40434807563778e-24!GO:0046907;intracellular transport;1.25394856759946e-22!GO:0065003;macromolecular complex assembly;3.38988053143836e-22!GO:0005783;endoplasmic reticulum;9.2638176352336e-22!GO:0006886;intracellular protein transport;1.0896543985942e-21!GO:0044445;cytosolic part;3.3395359474634e-21!GO:0006119;oxidative phosphorylation;4.88708228039952e-21!GO:0044455;mitochondrial membrane part;4.93715327508875e-20!GO:0006457;protein folding;8.35398504979605e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.05991366135219e-19!GO:0022607;cellular component assembly;1.42895090937902e-19!GO:0005654;nucleoplasm;2.48365164798664e-19!GO:0015934;large ribosomal subunit;4.51750367728774e-19!GO:0015935;small ribosomal subunit;1.31031073535597e-18!GO:0005681;spliceosome;2.89256952181349e-18!GO:0044432;endoplasmic reticulum part;1.17353556263882e-17!GO:0031980;mitochondrial lumen;2.23625227050794e-17!GO:0005759;mitochondrial matrix;2.23625227050794e-17!GO:0005746;mitochondrial respiratory chain;2.86722710640123e-17!GO:0012505;endomembrane system;5.30966281282876e-17!GO:0044451;nucleoplasm part;9.66849224709496e-17!GO:0048770;pigment granule;1.43724659987049e-16!GO:0042470;melanosome;1.43724659987049e-16!GO:0051186;cofactor metabolic process;7.56846223107123e-16!GO:0005794;Golgi apparatus;2.08131716727865e-15!GO:0006996;organelle organization and biogenesis;2.50079313143933e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.83311024937923e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.33386491799896e-14!GO:0003954;NADH dehydrogenase activity;1.33386491799896e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.33386491799896e-14!GO:0008134;transcription factor binding;1.49711580123486e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.5761958616155e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.52095438371665e-14!GO:0016874;ligase activity;1.39705420591883e-13!GO:0043228;non-membrane-bound organelle;2.36644405649016e-13!GO:0043232;intracellular non-membrane-bound organelle;2.36644405649016e-13!GO:0051082;unfolded protein binding;2.4245897181548e-13!GO:0003676;nucleic acid binding;2.49460995627492e-13!GO:0022618;protein-RNA complex assembly;4.10730842683573e-13!GO:0016070;RNA metabolic process;4.17792934039442e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.71932278361443e-13!GO:0042773;ATP synthesis coupled electron transport;5.71932278361443e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.83540691543106e-13!GO:0005730;nucleolus;8.84705939613648e-13!GO:0006732;coenzyme metabolic process;9.93886172634154e-13!GO:0030964;NADH dehydrogenase complex (quinone);9.99000341089706e-13!GO:0045271;respiratory chain complex I;9.99000341089706e-13!GO:0005747;mitochondrial respiratory chain complex I;9.99000341089706e-13!GO:0051641;cellular localization;1.76556796276611e-12!GO:0051649;establishment of cellular localization;1.9771590450767e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.91591960979736e-12!GO:0016462;pyrophosphatase activity;2.91641948406515e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.94153012055103e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.06675035427163e-12!GO:0005793;ER-Golgi intermediate compartment;3.82442541003511e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.13094440961532e-12!GO:0017111;nucleoside-triphosphatase activity;6.76031941905948e-12!GO:0006259;DNA metabolic process;8.03795394710201e-12!GO:0005761;mitochondrial ribosome;8.56143521370597e-12!GO:0000313;organellar ribosome;8.56143521370597e-12!GO:0044248;cellular catabolic process;8.62221665695025e-12!GO:0048193;Golgi vesicle transport;8.80340516975678e-12!GO:0005789;endoplasmic reticulum membrane;1.09404694423346e-11!GO:0006512;ubiquitin cycle;1.18535212509241e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.18731731337598e-11!GO:0008135;translation factor activity, nucleic acid binding;2.05648115925998e-11!GO:0044265;cellular macromolecule catabolic process;2.91622498451875e-11!GO:0006605;protein targeting;4.61113246733444e-11!GO:0000166;nucleotide binding;5.15283393122321e-11!GO:0043285;biopolymer catabolic process;6.15808318751202e-11!GO:0009055;electron carrier activity;6.64185515270347e-11!GO:0016192;vesicle-mediated transport;1.70759694977864e-10!GO:0009057;macromolecule catabolic process;2.70404361585327e-10!GO:0016491;oxidoreductase activity;5.8939361624036e-10!GO:0003712;transcription cofactor activity;1.12538191177137e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19250437015851e-09!GO:0000375;RNA splicing, via transesterification reactions;1.19250437015851e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19250437015851e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;1.33262725117443e-09!GO:0044257;cellular protein catabolic process;2.03260734641236e-09!GO:0019941;modification-dependent protein catabolic process;2.16360939495272e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.16360939495272e-09!GO:0006511;ubiquitin-dependent protein catabolic process;2.88793663771384e-09!GO:0043412;biopolymer modification;3.31327897434453e-09!GO:0030163;protein catabolic process;4.93587307448946e-09!GO:0003743;translation initiation factor activity;6.05474299389456e-09!GO:0005788;endoplasmic reticulum lumen;7.48042167828989e-09!GO:0006163;purine nucleotide metabolic process;8.99651982589437e-09!GO:0009259;ribonucleotide metabolic process;9.90558211789747e-09!GO:0009150;purine ribonucleotide metabolic process;1.06519480384074e-08!GO:0012501;programmed cell death;1.27379412690024e-08!GO:0006446;regulation of translational initiation;1.6372539153577e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.84658090583617e-08!GO:0051188;cofactor biosynthetic process;1.94873019533141e-08!GO:0016604;nuclear body;2.25398905119023e-08!GO:0006915;apoptosis;2.84375520927858e-08!GO:0006464;protein modification process;3.64747923502177e-08!GO:0006413;translational initiation;5.44259444815591e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.44259444815591e-08!GO:0048523;negative regulation of cellular process;5.56432968119943e-08!GO:0006164;purine nucleotide biosynthetic process;5.63204669200923e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.39074519571676e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.55841649157453e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.39742825171363e-08!GO:0009144;purine nucleoside triphosphate metabolic process;8.39742825171363e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.53320244249978e-08!GO:0006399;tRNA metabolic process;9.66603450516607e-08!GO:0006091;generation of precursor metabolites and energy;1.0892436369278e-07!GO:0009141;nucleoside triphosphate metabolic process;1.13900907881332e-07!GO:0008219;cell death;1.1951264086102e-07!GO:0016265;death;1.1951264086102e-07!GO:0009260;ribonucleotide biosynthetic process;1.39086187654846e-07!GO:0015986;ATP synthesis coupled proton transport;1.72257095650392e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.72257095650392e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.76794724619174e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.76794724619174e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.83537935592822e-07!GO:0008565;protein transporter activity;1.8356319473103e-07!GO:0005773;vacuole;1.8602053513174e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.88294761265788e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.30123808792641e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.30123808792641e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.34151575449884e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.34151575449884e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.34151575449884e-07!GO:0042254;ribosome biogenesis and assembly;2.69779349271076e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.72413364723912e-07!GO:0009060;aerobic respiration;3.30815610280793e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.32982947462324e-07!GO:0032553;ribonucleotide binding;4.03184169317376e-07!GO:0032555;purine ribonucleotide binding;4.03184169317376e-07!GO:0005768;endosome;4.05435914785075e-07!GO:0006913;nucleocytoplasmic transport;4.08974716086296e-07!GO:0016607;nuclear speck;5.00657865778302e-07!GO:0043038;amino acid activation;5.80120747489815e-07!GO:0006418;tRNA aminoacylation for protein translation;5.80120747489815e-07!GO:0043039;tRNA aminoacylation;5.80120747489815e-07!GO:0017076;purine nucleotide binding;5.81313205169023e-07!GO:0016564;transcription repressor activity;6.37284029037442e-07!GO:0051169;nuclear transport;6.50711930409097e-07!GO:0046034;ATP metabolic process;6.50711930409097e-07!GO:0030120;vesicle coat;7.07271891509683e-07!GO:0030662;coated vesicle membrane;7.07271891509683e-07!GO:0006366;transcription from RNA polymerase II promoter;7.40932075014203e-07!GO:0009056;catabolic process;7.40932075014203e-07!GO:0019829;cation-transporting ATPase activity;7.49501763075041e-07!GO:0006461;protein complex assembly;7.88050285375344e-07!GO:0017038;protein import;8.74806718424229e-07!GO:0016853;isomerase activity;9.93125331329737e-07!GO:0048475;coated membrane;1.13829851239728e-06!GO:0030117;membrane coat;1.13829851239728e-06!GO:0006323;DNA packaging;1.13829851239728e-06!GO:0008639;small protein conjugating enzyme activity;1.20147573425711e-06!GO:0048519;negative regulation of biological process;1.37900149339219e-06!GO:0045333;cellular respiration;1.50285063856134e-06!GO:0008654;phospholipid biosynthetic process;1.54221953118554e-06!GO:0006754;ATP biosynthetic process;1.56913294595866e-06!GO:0006753;nucleoside phosphate metabolic process;1.56913294595866e-06!GO:0009108;coenzyme biosynthetic process;1.70877566696194e-06!GO:0004842;ubiquitin-protein ligase activity;2.40915840552187e-06!GO:0043687;post-translational protein modification;2.41371749762054e-06!GO:0000323;lytic vacuole;2.60301583672781e-06!GO:0005764;lysosome;2.60301583672781e-06!GO:0009117;nucleotide metabolic process;2.61895531664658e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.68489563650981e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.94148443010041e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.54477561539548e-06!GO:0044431;Golgi apparatus part;3.70662837621774e-06!GO:0019787;small conjugating protein ligase activity;3.92923374984203e-06!GO:0031324;negative regulation of cellular metabolic process;4.09485254233208e-06!GO:0050794;regulation of cellular process;4.66582505787765e-06!GO:0005635;nuclear envelope;4.95709766852268e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.3241198758277e-06!GO:0051246;regulation of protein metabolic process;5.49778802909774e-06!GO:0005770;late endosome;5.83438527718607e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.40219018935886e-06!GO:0003714;transcription corepressor activity;7.08256175676914e-06!GO:0031965;nuclear membrane;7.52099041659863e-06!GO:0042623;ATPase activity, coupled;8.10012950549127e-06!GO:0003924;GTPase activity;8.23976792617329e-06!GO:0045259;proton-transporting ATP synthase complex;1.07419998990271e-05!GO:0016887;ATPase activity;1.21083002335913e-05!GO:0006099;tricarboxylic acid cycle;1.21717298066132e-05!GO:0046356;acetyl-CoA catabolic process;1.21717298066132e-05!GO:0051187;cofactor catabolic process;1.2699148441738e-05!GO:0016740;transferase activity;1.29181185015578e-05!GO:0016881;acid-amino acid ligase activity;1.54401010507157e-05!GO:0065002;intracellular protein transport across a membrane;1.57332116852419e-05!GO:0006752;group transfer coenzyme metabolic process;1.61185215206062e-05!GO:0009109;coenzyme catabolic process;1.80164682063311e-05!GO:0044440;endosomal part;1.9440908589242e-05!GO:0010008;endosome membrane;1.9440908589242e-05!GO:0044262;cellular carbohydrate metabolic process;2.15954343151126e-05!GO:0006084;acetyl-CoA metabolic process;2.24444486680467e-05!GO:0042981;regulation of apoptosis;2.27311347113968e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.28536645292884e-05!GO:0016859;cis-trans isomerase activity;2.37838972219728e-05!GO:0045454;cell redox homeostasis;2.42686993327155e-05!GO:0043067;regulation of programmed cell death;2.50353965093405e-05!GO:0031988;membrane-bound vesicle;2.50747791073607e-05!GO:0051276;chromosome organization and biogenesis;2.73571041557148e-05!GO:0031252;leading edge;2.76072768083423e-05!GO:0016568;chromatin modification;2.78567629310587e-05!GO:0016563;transcription activator activity;2.81299141772594e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.81299141772594e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.20077411750124e-05!GO:0019843;rRNA binding;3.49949277997052e-05!GO:0003713;transcription coactivator activity;3.49949277997052e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.58900908403458e-05!GO:0009892;negative regulation of metabolic process;3.78691437037661e-05!GO:0033116;ER-Golgi intermediate compartment membrane;3.89403814448425e-05!GO:0005524;ATP binding;3.89403814448425e-05!GO:0005667;transcription factor complex;4.00911542701745e-05!GO:0016072;rRNA metabolic process;4.08398167768561e-05!GO:0006364;rRNA processing;4.13838701499357e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.13838701499357e-05!GO:0045786;negative regulation of progression through cell cycle;4.30168172359629e-05!GO:0007049;cell cycle;4.37198275137054e-05!GO:0005762;mitochondrial large ribosomal subunit;4.38650515118315e-05!GO:0000315;organellar large ribosomal subunit;4.38650515118315e-05!GO:0032559;adenyl ribonucleotide binding;4.50453032489247e-05!GO:0046474;glycerophospholipid biosynthetic process;5.0650429824234e-05!GO:0044453;nuclear membrane part;5.77780191581079e-05!GO:0065004;protein-DNA complex assembly;5.89972433147233e-05!GO:0016481;negative regulation of transcription;6.18646097299483e-05!GO:0005798;Golgi-associated vesicle;6.63848498330422e-05!GO:0051789;response to protein stimulus;6.72441081263872e-05!GO:0006986;response to unfolded protein;6.72441081263872e-05!GO:0005581;collagen;7.37437437455268e-05!GO:0030554;adenyl nucleotide binding;7.55694139578245e-05!GO:0006916;anti-apoptosis;8.3843346637795e-05!GO:0000139;Golgi membrane;8.8045354215891e-05!GO:0030176;integral to endoplasmic reticulum membrane;8.97716363338587e-05!GO:0016787;hydrolase activity;9.37000857072332e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.44673004930858e-05!GO:0008026;ATP-dependent helicase activity;9.63206479595864e-05!GO:0008610;lipid biosynthetic process;0.000111719143411871!GO:0000245;spliceosome assembly;0.000111916515450238!GO:0015980;energy derivation by oxidation of organic compounds;0.000119367747560355!GO:0006974;response to DNA damage stimulus;0.000120096900877111!GO:0008361;regulation of cell size;0.000127020560131936!GO:0031982;vesicle;0.000131015898830101!GO:0043069;negative regulation of programmed cell death;0.0001362764168863!GO:0030867;rough endoplasmic reticulum membrane;0.000138271394970373!GO:0031410;cytoplasmic vesicle;0.000142092009566164!GO:0006333;chromatin assembly or disassembly;0.000154227904840443!GO:0030133;transport vesicle;0.000157154366379137!GO:0050789;regulation of biological process;0.000157371557952254!GO:0043066;negative regulation of apoptosis;0.000167098985598261!GO:0007005;mitochondrion organization and biogenesis;0.000175160660872569!GO:0004298;threonine endopeptidase activity;0.000187845804695379!GO:0016049;cell growth;0.000187845804695379!GO:0046467;membrane lipid biosynthetic process;0.0002037337402479!GO:0000074;regulation of progression through cell cycle;0.000221750640059076!GO:0005525;GTP binding;0.000235378076399098!GO:0051726;regulation of cell cycle;0.000256859594228248!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000264790262567222!GO:0004386;helicase activity;0.000268082575739528!GO:0046489;phosphoinositide biosynthetic process;0.000281684860617385!GO:0006082;organic acid metabolic process;0.00038855431673248!GO:0006613;cotranslational protein targeting to membrane;0.000388918557364071!GO:0043623;cellular protein complex assembly;0.000393830244388656!GO:0016779;nucleotidyltransferase activity;0.000405555151932396!GO:0001558;regulation of cell growth;0.000479715352959092!GO:0019752;carboxylic acid metabolic process;0.000506223668382641!GO:0051170;nuclear import;0.00055471182121678!GO:0006793;phosphorus metabolic process;0.000559440620022915!GO:0006796;phosphate metabolic process;0.000559440620022915!GO:0008250;oligosaccharyl transferase complex;0.000571783218584828!GO:0031968;organelle outer membrane;0.000607102223358434!GO:0032446;protein modification by small protein conjugation;0.000617690225449695!GO:0005791;rough endoplasmic reticulum;0.000617690225449695!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000650836585107546!GO:0000151;ubiquitin ligase complex;0.000680413806415345!GO:0019867;outer membrane;0.000711455762219349!GO:0006606;protein import into nucleus;0.000712558525734642!GO:0045892;negative regulation of transcription, DNA-dependent;0.000737574862949333!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000754336805158126!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00076921160221915!GO:0015399;primary active transmembrane transporter activity;0.00076921160221915!GO:0016567;protein ubiquitination;0.000780893491532282!GO:0005774;vacuolar membrane;0.000783606502609877!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000855578842517786!GO:0015002;heme-copper terminal oxidase activity;0.000855578842517786!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000855578842517786!GO:0004129;cytochrome-c oxidase activity;0.000855578842517786!GO:0009165;nucleotide biosynthetic process;0.000895897230316341!GO:0007243;protein kinase cascade;0.00090453947606044!GO:0005643;nuclear pore;0.000925305665701503!GO:0005905;coated pit;0.000986532461362123!GO:0005048;signal sequence binding;0.000991033742445196!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00100800665610479!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00106621465424914!GO:0000314;organellar small ribosomal subunit;0.001084241118845!GO:0005763;mitochondrial small ribosomal subunit;0.001084241118845!GO:0016310;phosphorylation;0.00110205258086297!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111410819506435!GO:0019222;regulation of metabolic process;0.00112439343485808!GO:0007040;lysosome organization and biogenesis;0.00112439343485808!GO:0005741;mitochondrial outer membrane;0.00121010552501928!GO:0051920;peroxiredoxin activity;0.00123198780886917!GO:0006281;DNA repair;0.0012356865539189!GO:0006979;response to oxidative stress;0.00126457340666277!GO:0003697;single-stranded DNA binding;0.00126522853123132!GO:0003899;DNA-directed RNA polymerase activity;0.00128177073305699!GO:0032561;guanyl ribonucleotide binding;0.00129667743579344!GO:0019001;guanyl nucleotide binding;0.00129667743579344!GO:0009719;response to endogenous stimulus;0.00131878678807978!GO:0051287;NAD binding;0.00148884462888162!GO:0051427;hormone receptor binding;0.00157609590469075!GO:0043021;ribonucleoprotein binding;0.00162321566029453!GO:0018196;peptidyl-asparagine modification;0.0017484208164573!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0017484208164573!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00178608245458945!GO:0022890;inorganic cation transmembrane transporter activity;0.00185048420240164!GO:0004576;oligosaccharyl transferase activity;0.00190381060818638!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00197529767976809!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00197529767976809!GO:0030663;COPI coated vesicle membrane;0.00201767797103416!GO:0030126;COPI vesicle coat;0.00201767797103416!GO:0030132;clathrin coat of coated pit;0.00203696674855387!GO:0044437;vacuolar part;0.00208354479043807!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00229812373587042!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00238339461419099!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00238339461419099!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00238339461419099!GO:0043681;protein import into mitochondrion;0.00240091984972529!GO:0005765;lysosomal membrane;0.00243430421932323!GO:0006612;protein targeting to membrane;0.00243430421932323!GO:0022402;cell cycle process;0.00246649992824675!GO:0006118;electron transport;0.00250994533377924!GO:0046930;pore complex;0.00255673647654209!GO:0050657;nucleic acid transport;0.00260049799438033!GO:0051236;establishment of RNA localization;0.00260049799438033!GO:0050658;RNA transport;0.00260049799438033!GO:0030137;COPI-coated vesicle;0.00263715349567977!GO:0030036;actin cytoskeleton organization and biogenesis;0.00264937650336559!GO:0035257;nuclear hormone receptor binding;0.0026917247158652!GO:0048522;positive regulation of cellular process;0.00269859714718655!GO:0031497;chromatin assembly;0.00274462027833551!GO:0007033;vacuole organization and biogenesis;0.00274462027833551!GO:0031902;late endosome membrane;0.00298209917839241!GO:0005769;early endosome;0.00300958827687197!GO:0043566;structure-specific DNA binding;0.00305639947883968!GO:0006403;RNA localization;0.00314864441617755!GO:0004177;aminopeptidase activity;0.00331295174133!GO:0031072;heat shock protein binding;0.00346681291956748!GO:0043284;biopolymer biosynthetic process;0.00356744050772469!GO:0003724;RNA helicase activity;0.00366572595543797!GO:0005586;collagen type III;0.00373451733125058!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00376412902062667!GO:0006506;GPI anchor biosynthetic process;0.00376532141592652!GO:0000785;chromatin;0.00387764628186823!GO:0008286;insulin receptor signaling pathway;0.00389996869609946!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00391625372974886!GO:0006807;nitrogen compound metabolic process;0.00401587313214203!GO:0006414;translational elongation;0.00403095958942949!GO:0006334;nucleosome assembly;0.00418147973449089!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00432367001907715!GO:0007050;cell cycle arrest;0.00451611886750342!GO:0006650;glycerophospholipid metabolic process;0.00456314612934338!GO:0030659;cytoplasmic vesicle membrane;0.00488117529944245!GO:0005885;Arp2/3 protein complex;0.00490561237258974!GO:0030027;lamellipodium;0.00507925559207192!GO:0006891;intra-Golgi vesicle-mediated transport;0.00529976508895922!GO:0042158;lipoprotein biosynthetic process;0.0053602930483959!GO:0048487;beta-tubulin binding;0.00549655946357543!GO:0019899;enzyme binding;0.00564904604865427!GO:0016044;membrane organization and biogenesis;0.00568627231996613!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0057700146830992!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00585005278565042!GO:0043492;ATPase activity, coupled to movement of substances;0.00587129702751319!GO:0015992;proton transport;0.00600649665551292!GO:0043488;regulation of mRNA stability;0.00612280359463836!GO:0043487;regulation of RNA stability;0.00612280359463836!GO:0004364;glutathione transferase activity;0.00614836466846981!GO:0007006;mitochondrial membrane organization and biogenesis;0.00617267459110715!GO:0051101;regulation of DNA binding;0.0065280509502628!GO:0007264;small GTPase mediated signal transduction;0.00677630384366832!GO:0006402;mRNA catabolic process;0.00681134323821686!GO:0030134;ER to Golgi transport vesicle;0.0068578883702191!GO:0006505;GPI anchor metabolic process;0.00690316780518819!GO:0006520;amino acid metabolic process;0.0069356327427697!GO:0006818;hydrogen transport;0.00693793750157044!GO:0006740;NADPH regeneration;0.00715061945061242!GO:0006098;pentose-phosphate shunt;0.00715061945061242!GO:0040029;regulation of gene expression, epigenetic;0.00741058191107914!GO:0006790;sulfur metabolic process;0.00743573791421877!GO:0006509;membrane protein ectodomain proteolysis;0.00743573791421877!GO:0033619;membrane protein proteolysis;0.00743573791421877!GO:0003729;mRNA binding;0.00764326653767323!GO:0031301;integral to organelle membrane;0.00792542493197724!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00796532431333805!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00796532431333805!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00796532431333805!GO:0003756;protein disulfide isomerase activity;0.00818007652871651!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00818007652871651!GO:0051329;interphase of mitotic cell cycle;0.00822460961717021!GO:0009308;amine metabolic process;0.00857831250041369!GO:0065007;biological regulation;0.00863341023916177!GO:0006497;protein amino acid lipidation;0.00899055727455581!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00904120469894019!GO:0030658;transport vesicle membrane;0.00905745939616959!GO:0030118;clathrin coat;0.00923466850042166!GO:0040008;regulation of growth;0.00928197041262572!GO:0000049;tRNA binding;0.00934609931684657!GO:0006672;ceramide metabolic process;0.00956070812553488!GO:0051539;4 iron, 4 sulfur cluster binding;0.00968135637092374!GO:0006626;protein targeting to mitochondrion;0.010225078665075!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0102943920035586!GO:0044255;cellular lipid metabolic process;0.0103324460055728!GO:0031272;regulation of pseudopodium formation;0.0104498997374627!GO:0031269;pseudopodium formation;0.0104498997374627!GO:0031344;regulation of cell projection organization and biogenesis;0.0104498997374627!GO:0031268;pseudopodium organization and biogenesis;0.0104498997374627!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0104498997374627!GO:0031274;positive regulation of pseudopodium formation;0.0104498997374627!GO:0017166;vinculin binding;0.0105104520008684!GO:0006778;porphyrin metabolic process;0.0112147787472588!GO:0033013;tetrapyrrole metabolic process;0.0112147787472588!GO:0050662;coenzyme binding;0.0114208019603875!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0114208019603875!GO:0045792;negative regulation of cell size;0.0116288823604902!GO:0030041;actin filament polymerization;0.011741349682442!GO:0030029;actin filament-based process;0.0118154811951492!GO:0006260;DNA replication;0.01195345987973!GO:0005583;fibrillar collagen;0.0121523809169101!GO:0016860;intramolecular oxidoreductase activity;0.0121523809169101!GO:0006643;membrane lipid metabolic process;0.0126276050045477!GO:0030308;negative regulation of cell growth;0.0129637907202108!GO:0030127;COPII vesicle coat;0.0130307615907492!GO:0012507;ER to Golgi transport vesicle membrane;0.0130307615907492!GO:0046483;heterocycle metabolic process;0.013049420210194!GO:0035035;histone acetyltransferase binding;0.0137271986992603!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0142525190045533!GO:0006383;transcription from RNA polymerase III promoter;0.0143042768976792!GO:0019318;hexose metabolic process;0.0144701759665637!GO:0008186;RNA-dependent ATPase activity;0.0147151783256998!GO:0030384;phosphoinositide metabolic process;0.0148065006037268!GO:0005813;centrosome;0.014878864819758!GO:0000030;mannosyltransferase activity;0.0150562792126504!GO:0015036;disulfide oxidoreductase activity;0.0156000877962847!GO:0006595;polyamine metabolic process;0.0158094946701958!GO:0051235;maintenance of localization;0.0158570660932262!GO:0044433;cytoplasmic vesicle part;0.0159853910085423!GO:0048518;positive regulation of biological process;0.0162464788900219!GO:0051098;regulation of binding;0.0162659935437931!GO:0031418;L-ascorbic acid binding;0.0162659935437931!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0162833577638813!GO:0032507;maintenance of cellular protein localization;0.016506872133898!GO:0044438;microbody part;0.016506872133898!GO:0044439;peroxisomal part;0.016506872133898!GO:0051168;nuclear export;0.0168983605728401!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0170174086506912!GO:0001726;ruffle;0.0172713364738364!GO:0051028;mRNA transport;0.017276688900153!GO:0042168;heme metabolic process;0.0175784310645624!GO:0030934;anchoring collagen;0.0177960401237057!GO:0065009;regulation of a molecular function;0.0178041008576178!GO:0005684;U2-dependent spliceosome;0.0178041008576178!GO:0005996;monosaccharide metabolic process;0.0183712818468645!GO:0016272;prefoldin complex;0.0186006307134624!GO:0051252;regulation of RNA metabolic process;0.0186006307134624!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0188226736411968!GO:0004667;prostaglandin-D synthase activity;0.0188226736411968!GO:0050802;circadian sleep/wake cycle, sleep;0.0188226736411968!GO:0022410;circadian sleep/wake cycle process;0.0188226736411968!GO:0042749;regulation of circadian sleep/wake cycle;0.0188226736411968!GO:0008033;tRNA processing;0.0189140504431874!GO:0006779;porphyrin biosynthetic process;0.019549592550241!GO:0033014;tetrapyrrole biosynthetic process;0.019549592550241!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0196213062075861!GO:0006352;transcription initiation;0.0198565931019171!GO:0048500;signal recognition particle;0.0201507542281296!GO:0030119;AP-type membrane coat adaptor complex;0.0204847036589218!GO:0030660;Golgi-associated vesicle membrane;0.0204997622965313!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.021170176558585!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.021170176558585!GO:0030521;androgen receptor signaling pathway;0.0223323790388896!GO:0051087;chaperone binding;0.0224067479976327!GO:0008652;amino acid biosynthetic process;0.0235153758804959!GO:0031903;microbody membrane;0.0235400159087558!GO:0005778;peroxisomal membrane;0.0235400159087558!GO:0046519;sphingoid metabolic process;0.023610009236517!GO:0005869;dynactin complex;0.0239166922304714!GO:0048471;perinuclear region of cytoplasm;0.0242800177875803!GO:0050749;apolipoprotein E receptor binding;0.0247413601216736!GO:0045926;negative regulation of growth;0.0253747390807118!GO:0006458;'de novo' protein folding;0.0255140398420847!GO:0051084;'de novo' posttranslational protein folding;0.0255140398420847!GO:0048037;cofactor binding;0.0255140398420847!GO:0030131;clathrin adaptor complex;0.0255140398420847!GO:0009967;positive regulation of signal transduction;0.025872758949073!GO:0005815;microtubule organizing center;0.0260167108206683!GO:0006519;amino acid and derivative metabolic process;0.0266403019106324!GO:0008047;enzyme activator activity;0.0266403019106324!GO:0033559;unsaturated fatty acid metabolic process;0.0266403019106324!GO:0006636;unsaturated fatty acid biosynthetic process;0.0266403019106324!GO:0045185;maintenance of protein localization;0.0267373119868621!GO:0006401;RNA catabolic process;0.0267582668713463!GO:0051325;interphase;0.0269434544628762!GO:0006984;ER-nuclear signaling pathway;0.0273785240191659!GO:0007034;vacuolar transport;0.0277058813106783!GO:0042802;identical protein binding;0.0280047303940581!GO:0008139;nuclear localization sequence binding;0.0288226750607633!GO:0030880;RNA polymerase complex;0.0291156923782272!GO:0006783;heme biosynthetic process;0.0291156923782272!GO:0004860;protein kinase inhibitor activity;0.0292662517844706!GO:0012506;vesicle membrane;0.0294187439149916!GO:0004004;ATP-dependent RNA helicase activity;0.0299972988895872!GO:0008154;actin polymerization and/or depolymerization;0.0299999158650964!GO:0051651;maintenance of cellular localization;0.0300012385582622!GO:0003746;translation elongation factor activity;0.0303667421985894!GO:0019798;procollagen-proline dioxygenase activity;0.0310005938401846!GO:0005694;chromosome;0.0313410317708607!GO:0006914;autophagy;0.0320669139299353!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0320669139299353!GO:0005975;carbohydrate metabolic process;0.0323950465662247!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0330044865741101!GO:0000209;protein polyubiquitination;0.0332920676757251!GO:0006066;alcohol metabolic process;0.0333223098372433!GO:0006739;NADP metabolic process;0.0345094411691841!GO:0006338;chromatin remodeling;0.0352220479645954!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0356424706574154!GO:0030145;manganese ion binding;0.0356424706574154!GO:0006354;RNA elongation;0.0365514864925555!GO:0030833;regulation of actin filament polymerization;0.0365514864925555!GO:0030503;regulation of cell redox homeostasis;0.0365514864925555!GO:0030125;clathrin vesicle coat;0.0365514864925555!GO:0030665;clathrin coated vesicle membrane;0.0365514864925555!GO:0043022;ribosome binding;0.0365677277102791!GO:0015248;sterol transporter activity;0.0367558579292425!GO:0000096;sulfur amino acid metabolic process;0.0368592048407555!GO:0006635;fatty acid beta-oxidation;0.0370178629042824!GO:0006897;endocytosis;0.0371367259945537!GO:0010324;membrane invagination;0.0371367259945537!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0375071142774472!GO:0010257;NADH dehydrogenase complex assembly;0.0375071142774472!GO:0033108;mitochondrial respiratory chain complex assembly;0.0375071142774472!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0375807869681991!GO:0045047;protein targeting to ER;0.0375807869681991!GO:0008168;methyltransferase activity;0.0376571045819486!GO:0031529;ruffle organization and biogenesis;0.0378826029567159!GO:0045893;positive regulation of transcription, DNA-dependent;0.038151567040748!GO:0003711;transcription elongation regulator activity;0.0381823552245012!GO:0030508;thiol-disulfide exchange intermediate activity;0.038189773434903!GO:0016363;nuclear matrix;0.0383753289002875!GO:0033673;negative regulation of kinase activity;0.0383817327426814!GO:0006469;negative regulation of protein kinase activity;0.0383817327426814!GO:0005811;lipid particle;0.0384070061612934!GO:0031543;peptidyl-proline dioxygenase activity;0.0384136690879338!GO:0003923;GPI-anchor transamidase activity;0.0386125580537961!GO:0016255;attachment of GPI anchor to protein;0.0386125580537961!GO:0042765;GPI-anchor transamidase complex;0.0386125580537961!GO:0031323;regulation of cellular metabolic process;0.0387699701898688!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0388199027783743!GO:0006289;nucleotide-excision repair;0.0393785406044467!GO:0016741;transferase activity, transferring one-carbon groups;0.0394700995759671!GO:0006629;lipid metabolic process;0.0396981319037758!GO:0006644;phospholipid metabolic process;0.0410209098489221!GO:0051348;negative regulation of transferase activity;0.0417407303273355!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0422797937861614!GO:0008632;apoptotic program;0.043073645464664!GO:0007021;tubulin folding;0.043740113204898!GO:0022408;negative regulation of cell-cell adhesion;0.0449412026160722!GO:0008629;induction of apoptosis by intracellular signals;0.0462113242514709!GO:0008180;signalosome;0.0468760553715156!GO:0050811;GABA receptor binding;0.0480046945554365!GO:0001953;negative regulation of cell-matrix adhesion;0.048367740505365!GO:0009081;branched chain family amino acid metabolic process;0.0484636032352153!GO:0006839;mitochondrial transport;0.0484636032352153!GO:0006769;nicotinamide metabolic process;0.0491533690372282 | |||
|sample_id=11539 | |sample_id=11539 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical cord | |sample_tissue=umbilical cord | ||
|top_motifs=GLI1..3:2.89618532352;ZNF423:2.71990157573;ESR1:2.49394330015;TAL1_TCF{3,4,12}:2.37947853626;RXR{A,B,G}:2.22287829799;ZNF238:2.21851936596;NR6A1:2.19618676487;RXRA_VDR{dimer}:2.05739259078;RORA:1.99202943619;TFAP4:1.94476718279;GTF2A1,2:1.75598825288;ATF6:1.7219677509;TFAP2{A,C}:1.55332982202;EBF1:1.44940778126;GZF1:1.36756365897;LHX3,4:1.35873516885;AR:1.33872599993;HOX{A5,B5}:1.26959460688;MAFB:1.20564400893;PAX5:1.16455642538;FOXM1:1.12960272486;ZNF148:1.11430239495;PATZ1:1.09565308974;NR3C1:1.04725877137;TFCP2:1.04707763884;SMAD1..7,9:1.01509558385;NR5A1,2:1.00649971545;NANOG{mouse}:0.956688491732;SPZ1:0.876540504464;SOX5:0.821481381778;TLX1..3_NFIC{dimer}:0.772484006468;RREB1:0.728803453103;GTF2I:0.724096736211;POU6F1:0.717255585604;IKZF1:0.706406472563;EN1,2:0.676093210371;TP53:0.671778552255;NKX3-1:0.668731263792;NR1H4:0.630118277531;bHLH_family:0.62270367048;ESRRA:0.550410737008;UFEwm:0.541119741313;PRRX1,2:0.521631545829;MAZ:0.509189864396;HAND1,2:0.46948624194;NANOG:0.467844627391;ZIC1..3:0.458408482302;KLF4:0.439187098309;CEBPA,B_DDIT3:0.436016710789;YY1:0.427945594021;TEAD1:0.378687503107;HLF:0.377148642917;NKX2-3_NKX2-5:0.366296494974;HNF1A:0.354722391678;ALX4:0.339649554045;SP1:0.334772482901;HIF1A:0.332825163762;MZF1:0.324845578751;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.315146505818;GFI1B:0.311313157069;STAT2,4,6:0.294286045566;FOXL1:0.282101336925;HNF4A_NR2F1,2:0.279371065479;ZBTB6:0.24682300282;PAX1,9:0.233195968548;SOX17:0.162432604858;HIC1:0.156785794713;DBP:0.126757197239;TOPORS:0.107487159746;XBP1:0.0997759349185;REST:0.0973543221427;PBX1:0.0945007708644;AIRE:0.0929942256493;ZNF384:0.085475235276;TFAP2B:0.0783602161107;MED-1{core}:0.0569083432173;NHLH1,2:0.0434009525436;PPARG:0.0357694742638;TBP:0.0197402328123;XCPE1{core}:0.0103985174121;EP300:-8.74686040832e-05;EVI1:-0.00746315367557;GATA6:-0.0196312835087;RFX1:-0.0240425802106;NKX2-2,8:-0.032440787748;FOXD3:-0.0460516095849;TEF:-0.055961962999;MTF1:-0.0573018214607;NKX6-1,2:-0.0586563641681;GCM1,2:-0.069226145207;STAT1,3:-0.0826379045148;MYFfamily:-0.0828719796786;HOX{A4,D4}:-0.105984797643;RFX2..5_RFXANK_RFXAP:-0.120854563735;NFATC1..3:-0.152284496586;NFE2:-0.163093724549;GATA4:-0.168804426082;HMX1:-0.180793501508;JUN:-0.182766480466;SREBF1,2:-0.192048836474;MTE{core}:-0.192538901815;POU2F1..3:-0.203825107925;RUNX1..3:-0.210298757421;LEF1_TCF7_TCF7L1,2:-0.213846941445;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.214189327878;HOXA9_MEIS1:-0.217237238352;SRF:-0.228928916364;HMGA1,2:-0.25421304991;BACH2:-0.255227557819;FOS_FOS{B,L1}_JUN{B,D}:-0.258827977293;NFKB1_REL_RELA:-0.265111158722;NFIL3:-0.266752783903;BPTF:-0.267469044706;ZNF143:-0.27307274606;PRDM1:-0.288830353982;MYBL2:-0.296732371482;NFE2L2:-0.303175683156;HES1:-0.307718722112;ONECUT1,2:-0.388392308163;TLX2:-0.401349649307;CDC5L:-0.457996426235;HOX{A6,A7,B6,B7}:-0.47928336432;PAX2:-0.490895687599;HSF1,2:-0.50188803373;LMO2:-0.503186677176;FOSL2:-0.513678872941;ATF2:-0.524657284275;ELK1,4_GABP{A,B1}:-0.532278688851;EGR1..3:-0.532800271554;ETS1,2:-0.559743122973;NFE2L1:-0.559971172571;DMAP1_NCOR{1,2}_SMARC:-0.569565958106;MEF2{A,B,C,D}:-0.582437264151;RBPJ:-0.586009778924;FOX{D1,D2}:-0.587439970457;SPIB:-0.588978938093;GFI1:-0.609971327114;CRX:-0.623115847396;FOXQ1:-0.628609927426;TBX4,5:-0.655861098747;IRF1,2:-0.680914765374;ELF1,2,4:-0.681305474535;T:-0.686996262068;NRF1:-0.707595804081;CUX2:-0.712079021257;SNAI1..3:-0.712652804472;STAT5{A,B}:-0.723061136573;ATF4:-0.725108470396;ZEB1:-0.738210479429;TGIF1:-0.742879162355;ARID5B:-0.744976850727;SPI1:-0.807309126355;FOXP3:-0.818885030841;SOX2:-0.838385524585;FOX{F1,F2,J1}:-0.839960780574;VSX1,2:-0.845073050048;ADNP_IRX_SIX_ZHX:-0.869450289992;ATF5_CREB3:-0.872766780124;IRF7:-0.881601642665;FOXA2:-0.899022371802;FOXN1:-0.93880111146;POU3F1..4:-0.950426298662;PAX4:-0.95641574408;AHR_ARNT_ARNT2:-0.973020971327;SOX{8,9,10}:-1.02123024194;NFIX:-1.02699012022;NKX3-2:-1.0312278082;POU5F1:-1.03564781203;NFY{A,B,C}:-1.0402599951;PAX6:-1.06241823464;E2F1..5:-1.11591302018;PAX3,7:-1.15696383193;CDX1,2,4:-1.17284441761;CREB1:-1.19354585873;BREu{core}:-1.22134030044;FOXO1,3,4:-1.26156864847;NKX2-1,4:-1.27415256485;OCT4_SOX2{dimer}:-1.38793806598;MYOD1:-1.3974574281;PDX1:-1.40559274957;MYB:-1.42666638106;FOXP1:-1.44304434209;ZFP161:-1.54847652197;PITX1..3:-1.62804624548;ZBTB16:-1.63909710535;POU1F1:-1.65052793743;TFDP1:-1.68519580826;PAX8:-1.70401260058;FOX{I1,J2}:-2.01974557949;ALX1:-2.0662018376;IKZF2:-2.16314562556;HBP1_HMGB_SSRP1_UBTF:-2.26428830599 | |top_motifs=GLI1..3:2.89618532352;ZNF423:2.71990157573;ESR1:2.49394330015;TAL1_TCF{3,4,12}:2.37947853626;RXR{A,B,G}:2.22287829799;ZNF238:2.21851936596;NR6A1:2.19618676487;RXRA_VDR{dimer}:2.05739259078;RORA:1.99202943619;TFAP4:1.94476718279;GTF2A1,2:1.75598825288;ATF6:1.7219677509;TFAP2{A,C}:1.55332982202;EBF1:1.44940778126;GZF1:1.36756365897;LHX3,4:1.35873516885;AR:1.33872599993;HOX{A5,B5}:1.26959460688;MAFB:1.20564400893;PAX5:1.16455642538;FOXM1:1.12960272486;ZNF148:1.11430239495;PATZ1:1.09565308974;NR3C1:1.04725877137;TFCP2:1.04707763884;SMAD1..7,9:1.01509558385;NR5A1,2:1.00649971545;NANOG{mouse}:0.956688491732;SPZ1:0.876540504464;SOX5:0.821481381778;TLX1..3_NFIC{dimer}:0.772484006468;RREB1:0.728803453103;GTF2I:0.724096736211;POU6F1:0.717255585604;IKZF1:0.706406472563;EN1,2:0.676093210371;TP53:0.671778552255;NKX3-1:0.668731263792;NR1H4:0.630118277531;bHLH_family:0.62270367048;ESRRA:0.550410737008;UFEwm:0.541119741313;PRRX1,2:0.521631545829;MAZ:0.509189864396;HAND1,2:0.46948624194;NANOG:0.467844627391;ZIC1..3:0.458408482302;KLF4:0.439187098309;CEBPA,B_DDIT3:0.436016710789;YY1:0.427945594021;TEAD1:0.378687503107;HLF:0.377148642917;NKX2-3_NKX2-5:0.366296494974;HNF1A:0.354722391678;ALX4:0.339649554045;SP1:0.334772482901;HIF1A:0.332825163762;MZF1:0.324845578751;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.315146505818;GFI1B:0.311313157069;STAT2,4,6:0.294286045566;FOXL1:0.282101336925;HNF4A_NR2F1,2:0.279371065479;ZBTB6:0.24682300282;PAX1,9:0.233195968548;SOX17:0.162432604858;HIC1:0.156785794713;DBP:0.126757197239;TOPORS:0.107487159746;XBP1:0.0997759349185;REST:0.0973543221427;PBX1:0.0945007708644;AIRE:0.0929942256493;ZNF384:0.085475235276;TFAP2B:0.0783602161107;MED-1{core}:0.0569083432173;NHLH1,2:0.0434009525436;PPARG:0.0357694742638;TBP:0.0197402328123;XCPE1{core}:0.0103985174121;EP300:-8.74686040832e-05;EVI1:-0.00746315367557;GATA6:-0.0196312835087;RFX1:-0.0240425802106;NKX2-2,8:-0.032440787748;FOXD3:-0.0460516095849;TEF:-0.055961962999;MTF1:-0.0573018214607;NKX6-1,2:-0.0586563641681;GCM1,2:-0.069226145207;STAT1,3:-0.0826379045148;MYFfamily:-0.0828719796786;HOX{A4,D4}:-0.105984797643;RFX2..5_RFXANK_RFXAP:-0.120854563735;NFATC1..3:-0.152284496586;NFE2:-0.163093724549;GATA4:-0.168804426082;HMX1:-0.180793501508;JUN:-0.182766480466;SREBF1,2:-0.192048836474;MTE{core}:-0.192538901815;POU2F1..3:-0.203825107925;RUNX1..3:-0.210298757421;LEF1_TCF7_TCF7L1,2:-0.213846941445;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.214189327878;HOXA9_MEIS1:-0.217237238352;SRF:-0.228928916364;HMGA1,2:-0.25421304991;BACH2:-0.255227557819;FOS_FOS{B,L1}_JUN{B,D}:-0.258827977293;NFKB1_REL_RELA:-0.265111158722;NFIL3:-0.266752783903;BPTF:-0.267469044706;ZNF143:-0.27307274606;PRDM1:-0.288830353982;MYBL2:-0.296732371482;NFE2L2:-0.303175683156;HES1:-0.307718722112;ONECUT1,2:-0.388392308163;TLX2:-0.401349649307;CDC5L:-0.457996426235;HOX{A6,A7,B6,B7}:-0.47928336432;PAX2:-0.490895687599;HSF1,2:-0.50188803373;LMO2:-0.503186677176;FOSL2:-0.513678872941;ATF2:-0.524657284275;ELK1,4_GABP{A,B1}:-0.532278688851;EGR1..3:-0.532800271554;ETS1,2:-0.559743122973;NFE2L1:-0.559971172571;DMAP1_NCOR{1,2}_SMARC:-0.569565958106;MEF2{A,B,C,D}:-0.582437264151;RBPJ:-0.586009778924;FOX{D1,D2}:-0.587439970457;SPIB:-0.588978938093;GFI1:-0.609971327114;CRX:-0.623115847396;FOXQ1:-0.628609927426;TBX4,5:-0.655861098747;IRF1,2:-0.680914765374;ELF1,2,4:-0.681305474535;T:-0.686996262068;NRF1:-0.707595804081;CUX2:-0.712079021257;SNAI1..3:-0.712652804472;STAT5{A,B}:-0.723061136573;ATF4:-0.725108470396;ZEB1:-0.738210479429;TGIF1:-0.742879162355;ARID5B:-0.744976850727;SPI1:-0.807309126355;FOXP3:-0.818885030841;SOX2:-0.838385524585;FOX{F1,F2,J1}:-0.839960780574;VSX1,2:-0.845073050048;ADNP_IRX_SIX_ZHX:-0.869450289992;ATF5_CREB3:-0.872766780124;IRF7:-0.881601642665;FOXA2:-0.899022371802;FOXN1:-0.93880111146;POU3F1..4:-0.950426298662;PAX4:-0.95641574408;AHR_ARNT_ARNT2:-0.973020971327;SOX{8,9,10}:-1.02123024194;NFIX:-1.02699012022;NKX3-2:-1.0312278082;POU5F1:-1.03564781203;NFY{A,B,C}:-1.0402599951;PAX6:-1.06241823464;E2F1..5:-1.11591302018;PAX3,7:-1.15696383193;CDX1,2,4:-1.17284441761;CREB1:-1.19354585873;BREu{core}:-1.22134030044;FOXO1,3,4:-1.26156864847;NKX2-1,4:-1.27415256485;OCT4_SOX2{dimer}:-1.38793806598;MYOD1:-1.3974574281;PDX1:-1.40559274957;MYB:-1.42666638106;FOXP1:-1.44304434209;ZFP161:-1.54847652197;PITX1..3:-1.62804624548;ZBTB16:-1.63909710535;POU1F1:-1.65052793743;TFDP1:-1.68519580826;PAX8:-1.70401260058;FOX{I1,J2}:-2.01974557949;ALX1:-2.0662018376;IKZF2:-2.16314562556;HBP1_HMGB_SSRP1_UBTF:-2.26428830599 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11539-120A9;search_select_hide=table117:FF:11539-120A9 | |||
}} | }} | ||
Latest revision as of 18:07, 4 June 2020
| Name: | Mesenchymal Stem Cells - umbilical, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11347 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11347
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11347
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.622 |
| 10 | 10 | 0.979 |
| 100 | 100 | 0.837 |
| 101 | 101 | 0.977 |
| 102 | 102 | 0.72 |
| 103 | 103 | 0.232 |
| 104 | 104 | 0.781 |
| 105 | 105 | 0.414 |
| 106 | 106 | 0.0678 |
| 107 | 107 | 0.0528 |
| 108 | 108 | 0.272 |
| 109 | 109 | 0.218 |
| 11 | 11 | 0.131 |
| 110 | 110 | 0.244 |
| 111 | 111 | 0.616 |
| 112 | 112 | 0.932 |
| 113 | 113 | 0.0972 |
| 114 | 114 | 0.6 |
| 115 | 115 | 0.329 |
| 116 | 116 | 0.0908 |
| 117 | 117 | 0.402 |
| 118 | 118 | 0.324 |
| 119 | 119 | 0.865 |
| 12 | 12 | 0.798 |
| 120 | 120 | 0.111 |
| 121 | 121 | 0.921 |
| 122 | 122 | 0.407 |
| 123 | 123 | 0.00248 |
| 124 | 124 | 0.483 |
| 125 | 125 | 0.111 |
| 126 | 126 | 0.412 |
| 127 | 127 | 0.502 |
| 128 | 128 | 0.202 |
| 129 | 129 | 0.51 |
| 13 | 13 | 0.621 |
| 130 | 130 | 0.47 |
| 131 | 131 | 0.37 |
| 132 | 132 | 0.183 |
| 133 | 133 | 0.573 |
| 134 | 134 | 0.643 |
| 135 | 135 | 0.582 |
| 136 | 136 | 0.531 |
| 137 | 137 | 0.0734 |
| 138 | 138 | 0.35 |
| 139 | 139 | 0.00492 |
| 14 | 14 | 0.78 |
| 140 | 140 | 0.168 |
| 141 | 141 | 0.52 |
| 142 | 142 | 0.488 |
| 143 | 143 | 0.153 |
| 144 | 144 | 0.117 |
| 145 | 145 | 0.512 |
| 146 | 146 | 0.352 |
| 147 | 147 | 0.29 |
| 148 | 148 | 0.831 |
| 149 | 149 | 0.00108 |
| 15 | 15 | 0.882 |
| 150 | 150 | 0.459 |
| 151 | 151 | 0.401 |
| 152 | 152 | 0.0682 |
| 153 | 153 | 0.387 |
| 154 | 154 | 0.429 |
| 155 | 155 | 0.468 |
| 156 | 156 | 0.689 |
| 157 | 157 | 0.0887 |
| 158 | 158 | 0.974 |
| 159 | 159 | 0.968 |
| 16 | 16 | 0.0283 |
| 160 | 160 | 0.0575 |
| 161 | 161 | 0.348 |
| 162 | 162 | 0.294 |
| 163 | 163 | 0.955 |
| 164 | 164 | 0.537 |
| 165 | 165 | 0.555 |
| 166 | 166 | 0.397 |
| 167 | 167 | 0.341 |
| 168 | 168 | 0.427 |
| 169 | 169 | 0.0371 |
| 17 | 17 | 0.234 |
| 18 | 18 | 0.0759 |
| 19 | 19 | 0.0297 |
| 2 | 2 | 0.263 |
| 20 | 20 | 0.902 |
| 21 | 21 | 0.123 |
| 22 | 22 | 0.0423 |
| 23 | 23 | 0.157 |
| 24 | 24 | 0.403 |
| 25 | 25 | 0.587 |
| 26 | 26 | 0.219 |
| 27 | 27 | 0.487 |
| 28 | 28 | 0.287 |
| 29 | 29 | 0.591 |
| 3 | 3 | 0.278 |
| 30 | 30 | 0.224 |
| 31 | 31 | 0.237 |
| 32 | 32 | 1.26866e-15 |
| 33 | 33 | 0.894 |
| 34 | 34 | 0.151 |
| 35 | 35 | 0.875 |
| 36 | 36 | 0.563 |
| 37 | 37 | 0.0997 |
| 38 | 38 | 0.639 |
| 39 | 39 | 0.264 |
| 4 | 4 | 0.945 |
| 40 | 40 | 0.221 |
| 41 | 41 | 0.143 |
| 42 | 42 | 0.95 |
| 43 | 43 | 0.124 |
| 44 | 44 | 0.374 |
| 45 | 45 | 0.308 |
| 46 | 46 | 0.148 |
| 47 | 47 | 0.533 |
| 48 | 48 | 0.222 |
| 49 | 49 | 0.159 |
| 5 | 5 | 0.778 |
| 50 | 50 | 0.334 |
| 51 | 51 | 0.186 |
| 52 | 52 | 0.614 |
| 53 | 53 | 0.633 |
| 54 | 54 | 0.361 |
| 55 | 55 | 0.632 |
| 56 | 56 | 0.309 |
| 57 | 57 | 0.884 |
| 58 | 58 | 0.856 |
| 59 | 59 | 0.0418 |
| 6 | 6 | 0.401 |
| 60 | 60 | 0.43 |
| 61 | 61 | 0.539 |
| 62 | 62 | 0.422 |
| 63 | 63 | 0.302 |
| 64 | 64 | 0.295 |
| 65 | 65 | 0.0687 |
| 66 | 66 | 0.567 |
| 67 | 67 | 0.865 |
| 68 | 68 | 0.0325 |
| 69 | 69 | 0.189 |
| 7 | 7 | 0.865 |
| 70 | 70 | 0.0453 |
| 71 | 71 | 0.128 |
| 72 | 72 | 0.883 |
| 73 | 73 | 0.0524 |
| 74 | 74 | 0.839 |
| 75 | 75 | 0.271 |
| 76 | 76 | 0.796 |
| 77 | 77 | 0.0267 |
| 78 | 78 | 0.66 |
| 79 | 79 | 0.00453 |
| 8 | 8 | 0.186 |
| 80 | 80 | 0.69 |
| 81 | 81 | 0.847 |
| 82 | 82 | 0.131 |
| 83 | 83 | 0.948 |
| 84 | 84 | 0.199 |
| 85 | 85 | 0.0772 |
| 86 | 86 | 0.845 |
| 87 | 87 | 0.584 |
| 88 | 88 | 0.247 |
| 89 | 89 | 0.0323 |
| 9 | 9 | 0.12 |
| 90 | 90 | 0.422 |
| 91 | 91 | 0.802 |
| 92 | 92 | 0.142 |
| 93 | 93 | 0.613 |
| 94 | 94 | 0.306 |
| 95 | 95 | 0.345 |
| 96 | 96 | 0.68 |
| 97 | 97 | 0.649 |
| 98 | 98 | 0.411 |
| 99 | 99 | 0.109 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11347
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000094 human mesenchymal stem cell of umbilical cord-Sciencell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)
UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
