FF:10798-110I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004827 | |||
|accession_numbers=CAGE;DRX008020;DRR008892;DRZ000317;DRZ001702;DRZ011667;DRZ013052 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100306 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10798-110I6 | |id=FF:10798-110I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100306 | ||
|is_obsolete= | |||
|library_id=CNhs11884 | |||
|library_id_phase_based=2:CNhs11884 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10798 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10798 | |||
|name=teratocarcinoma cell line:NCR-G1 | |name=teratocarcinoma cell line:NCR-G1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11884,LSID830,release010,COMPLETED | |profile_hcage=CNhs11884,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0259038582604831,0,0,0,0,-0.062229378502137,0.0518077165209662,-0.00161566280250625,0.318201377509854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394939850582235,0,0,0,0,0,0.559820353241732,0,0,0.268509781633432,0,0,0,0,0,0,0,0,0,0,0,0,0.137782674756692,0.13041677269469,0,0,0,0,0,0,0,0.59536094632798,0,0,0,0.0980886515842491,0,0.00403212395024832,0,0.325774789686405,0,0,0.383694046678579,0,0,0,0,0,0,0,0,0.0518077165209662,0,0,0,0,0.21311714614554,0,0,0,0.0106687890353666,0,0,0.0518077165209662,0,0,0,0.128471683965875,0.0259038582604831,0,0,0.0873825220921313,0.0593828521220988,0.0259038582604831,0,0,0.0980886515842491,0.147524446338181,0.216753112415661,0,0,0,0.13990914075318,0,0,0.0980886515842491,0,0,0,0,0,0,0,0,0,0,0.010184979150309,0.0518077165209662,0,0,0,-0.0634540010947704,0.0518077165209662,0,0.13990914075318,0,0.0259038582604831,0 | |||
|repeat_enrich_byname=0.0111459582221082,0,0,0.0518077165209662,0.147524446338181,0,0.0980886515842491,0,0,0,0.0518077165209662,0,0.0518077165209662,0,0,0,-0.0691249919299559,0.118998896168715,0.427285864865718,0.132231326867536,0,0,-0.041938099395329,0,0,0,0,0.0980886515842491,0,0.13990914075318,0.0518077165209662,0,0.0849972791929752,0,0.00139516493165132,0.0259038582604831,0,0.0518077165209662,0,0.0513292892927395,0.193372179218719,0,0.135677790474871,0.0297443905068809,0,0.0518077165209662,0,0,-0.200286098957734,0,0.0190296569594393,-0.0309124518024511,0.221460269948879,-0.106385896955583,-0.04680465889238,0,0,0,-0.24648872986092,0.047673826969457,0,0,-0.121779851751874,0.0455505578126493,0,0,-0.391044581551635,2.2265880961987,0,0.00110505559870485,0,0.228369661659829,0,0,0,0,0,0,0,0,0,0,0,0.0805778006484922,0.135480906437947,0.0259038582604831,0,0.0518077165209662,0.00820488086787075,-0.296205141922435,0,0.0150534445375862,-0.373286155956567,-0.0240721789089731,0.0516585691846725,0.668384015698071,0,0.412028101189182,0.0975340866393417,-0.138783828542216,0.0873825220921313,-0.147401849371139,-0.189981719549847,0,0.0676161449573154,0.190938644001251,0.106845875028263,-0.0996248288919537,-0.013209100767528,-0.303257960343833,0.144064500166224,0.0518077165209662,0.0980886515842491,0,-0.145272083988667,0,0.0958076194836952,-0.392026062892524,-0.0150204849568914,-0.396856006010381,-0.116610668737168,0.275779000160928,0.370854369752329,0.621537506434356,-0.359347801312346,0,0.22761485555966,0,0,0,0.0971404096184738,0.0942336471990152,0.00404553007008368,0,0.185735081550317,-0.0683442610773682,0.442618327022963,-0.029859758994152,0.180169727673808,0,0,-0.0305143699407497,0,0,0,0.0399761384684228,0,-0.0485756204230785,-0.539492143030166,0.0976163524449033,0,0.0611428063533065,-0.0743110160545175,0.165034445181626,0,0.109428646343531,0.0433890359650822,-0.0529938127178038,0.0285513066807261,0.0355313340426921,0.224953275456626,-0.273894718019103,0.0130631870166057,0.0206770526599485,0.0814623139413547,0.170900149841996,0.1010467710138,0.143208806763162,-0.543380067214339,0.184272572697681,-0.0363191159543215,0,0.148097344857483,-0.627690415100558,0.06900938832614,0.117497852988929,0.0518077165209662,-0.035208404940908,0,0.200579532638514,0,0.014445148101328,-0.54043375147324,-0.439289374580686,-0.166388150497534,0,0.400861385430836,0.146463959598728,0,0.0209836068276983,0,1.24231291964262,0.0276868000209692,0.128471683965875,0.0781096995193622,-0.0899451308870701,0,-0.197452066716782,0,0,-0.322220150781764,0.207595820287297,0.0518077165209662,-0.0995855300506302,0.0106687890353666,0.0994494457731833,-0.115971073434934,0,0,0.370316610906184,-0.0433261419543308,1.01068109370385,0.719280892106798,-0.0737548086020372,0.396233624940275,-0.113417200733576,-0.151922945258763,0.0678903339951044,0,0,-0.125720049444209,0,0.255352701467153,0,0,0.122880648012697,-0.116628112990133,0,0,0.13990914075318,0,0,0,0,0,0,0,0,0.208522924361411,-0.0508627141060171,0.0518077165209662,0.0122486929109782,0,0.0518077165209662,0,0,0.178053883355609,0,0,0,-0.254301794374418,0.264433696300295,0.152729053714588,0.0259038582604831,0,0,0.0406657128187128,0.429783312876291,0.127235351905724,0,0.269603664914663,0.21311714614554,0.0490443257921246,0,0,0.0919128935663972,0,0,0,0.06995457037659,-0.057730457053664,0.0110531407224374,0,0,0,0.255452341475712,0,0,0,0,0.125303101582626,0,0,-0.169460670269464,0,0.101578386699337,0.812829399221357,0.00056584595718777,-0.20278227141976,-0.0992068381092883,0.0383990829249308,0,0,0.56482051868857,0,0.0490443257921246,0.394988033537375,0,0.178053883355609,0.166920110381549,0,0,0,0,0.0580302112331346,0,0.720280384972946,0,0,0,0,0,0.0518077165209662,0,0,0,0,0,-0.368518486440742,0.0858298266970981,0,0,0,0.0518077165209662,0,0,0,-0.0241060230789031,-0.208605606595126,0,0,0,0,0,0.0518077165209662,0,0,0.522842591778816,0,0,0.0518077165209662,0,0,0.325774789686405,0.0110607096082161,0,0,0.0518077165209662,0.496493614266529,0.0518077165209662,0,-0.00161566280250625,0,0.0518077165209662,0,0,0,0.0518077165209662,0.0518077165209662,0.0383148352854261,0.0367531264925988,0,0.0518077165209662,0,0,-0.0252304344511986,-0.231887559822339,0,0.0518077165209662,0,0,0,0.0518077165209662,0,0.168238559845595,0.0518077165209662,0.13990914075318,0,0,0.0260247670442027,0,0,0,0.540710330640609,0,-0.062229378502137,0,0,0,0.0259038582604831,0,0,0.122779898787944,0.0518077165209662,0,0,0,0,0,0,0,0,0,0,0.0490443257921246,0,0,0.258818832008282,0,-0.138031600103559,-0.0395840163528982,0,0,-0.0806430445778265,0,0,0,0,0,0,0.091439474759417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0518077165209662,0,0,0,0,0,0,0.148780086702641,0,0,0,0,0,0,0,0.559820353241732,0,0,-0.0920328098005262,0,0.0518077165209662,0.0407054917796239,0.0518077165209662,0.0518077165209662,0,-0.0872436549505621,0.0402926846709438,0.0616466573703698,0,0,0,0.202753037336486,0.0980886515842491,0,0.0409518746361097,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=102.78054 | |rna_weight_ug=102.78054 | ||
|sample_age=embryo | |sample_age=embryo | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb1166 | |sample_cell_catalog=jcrb1166 | ||
|sample_cell_line=NCR-G1 | |sample_cell_line=NCR-G1 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.02570412653823e-285!GO:0043226;organelle;8.31098025154791e-238!GO:0043229;intracellular organelle;6.46133745061169e-237!GO:0043227;membrane-bound organelle;2.67513372288455e-230!GO:0043231;intracellular membrane-bound organelle;3.32966598743643e-230!GO:0005737;cytoplasm;4.41134424381907e-168!GO:0044422;organelle part;3.81785605354944e-153!GO:0044446;intracellular organelle part;1.49925032342974e-151!GO:0005634;nucleus;1.09938247605838e-121!GO:0032991;macromolecular complex;1.84928278893811e-113!GO:0044444;cytoplasmic part;1.32894667863239e-111!GO:0044238;primary metabolic process;2.2049574471297e-108!GO:0044237;cellular metabolic process;7.41307585056667e-108!GO:0043170;macromolecule metabolic process;1.21240048846106e-106!GO:0030529;ribonucleoprotein complex;2.71100293623403e-94!GO:0044428;nuclear part;1.25781531333628e-85!GO:0003723;RNA binding;1.70372317996795e-79!GO:0043233;organelle lumen;1.99393886674162e-78!GO:0031974;membrane-enclosed lumen;1.99393886674162e-78!GO:0043283;biopolymer metabolic process;1.64289758934206e-70!GO:0005515;protein binding;1.22172079023706e-68!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.60093965184876e-64!GO:0005739;mitochondrion;3.56167441676438e-64!GO:0010467;gene expression;1.90733538982586e-63!GO:0043234;protein complex;2.59542278841236e-58!GO:0005840;ribosome;8.66884689564935e-57!GO:0006396;RNA processing;4.9341081239114e-56!GO:0016043;cellular component organization and biogenesis;1.350639282295e-53!GO:0031981;nuclear lumen;1.9388368995029e-51!GO:0006412;translation;4.02183428804407e-49!GO:0003735;structural constituent of ribosome;2.00668270842015e-48!GO:0043228;non-membrane-bound organelle;7.90018129906736e-48!GO:0043232;intracellular non-membrane-bound organelle;7.90018129906736e-48!GO:0003676;nucleic acid binding;5.49835067986414e-46!GO:0019538;protein metabolic process;5.10998220710347e-45!GO:0033279;ribosomal subunit;4.64816558974803e-44!GO:0016071;mRNA metabolic process;1.61981088770819e-43!GO:0044429;mitochondrial part;1.43593198426469e-42!GO:0006259;DNA metabolic process;3.30431921112785e-42!GO:0006996;organelle organization and biogenesis;4.01475831209099e-42!GO:0065003;macromolecular complex assembly;3.25978020301327e-41!GO:0008380;RNA splicing;1.84266168423916e-40!GO:0031090;organelle membrane;8.54583950857574e-40!GO:0009058;biosynthetic process;1.00638212072598e-39!GO:0044260;cellular macromolecule metabolic process;1.7695622359672e-39!GO:0044267;cellular protein metabolic process;2.1175646877608e-39!GO:0031967;organelle envelope;3.5038935328997e-39!GO:0033036;macromolecule localization;7.88967080957633e-39!GO:0031975;envelope;8.99810973719011e-39!GO:0015031;protein transport;1.04960988084178e-38!GO:0044249;cellular biosynthetic process;2.08673015328753e-38!GO:0022607;cellular component assembly;7.81029008754303e-38!GO:0009059;macromolecule biosynthetic process;1.33590913261556e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.41245184820573e-37!GO:0006397;mRNA processing;6.43483016429284e-37!GO:0046907;intracellular transport;3.3358488440551e-35!GO:0005829;cytosol;7.05410713378753e-35!GO:0016070;RNA metabolic process;1.07361001965479e-34!GO:0008104;protein localization;1.56194835929541e-34!GO:0007049;cell cycle;2.08723490967865e-34!GO:0045184;establishment of protein localization;1.13250275424558e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.93914412480443e-32!GO:0005654;nucleoplasm;1.09944057246305e-31!GO:0005681;spliceosome;5.43820732737978e-29!GO:0000166;nucleotide binding;8.74684648765436e-28!GO:0006886;intracellular protein transport;1.28652545995027e-27!GO:0019866;organelle inner membrane;1.60916854036562e-27!GO:0006974;response to DNA damage stimulus;1.23854693083474e-26!GO:0022402;cell cycle process;1.39217904071164e-26!GO:0000278;mitotic cell cycle;3.70860486386233e-26!GO:0005740;mitochondrial envelope;4.1838933044486e-26!GO:0044451;nucleoplasm part;9.66579205184983e-26!GO:0005694;chromosome;1.08383984395687e-25!GO:0044445;cytosolic part;2.21626554951422e-25!GO:0005743;mitochondrial inner membrane;7.25278878469503e-25!GO:0031966;mitochondrial membrane;1.97714279683783e-24!GO:0015935;small ribosomal subunit;7.07624940808003e-23!GO:0006119;oxidative phosphorylation;7.2658807480063e-23!GO:0006281;DNA repair;1.47946235768756e-22!GO:0051649;establishment of cellular localization;1.49169232443752e-22!GO:0015934;large ribosomal subunit;3.02868240102122e-22!GO:0044427;chromosomal part;4.68807696746495e-22!GO:0051641;cellular localization;7.05200306571449e-22!GO:0000087;M phase of mitotic cell cycle;1.47397664295839e-21!GO:0022618;protein-RNA complex assembly;2.71539672284835e-21!GO:0007067;mitosis;3.71799131543478e-21!GO:0022403;cell cycle phase;1.47419320380894e-20!GO:0044455;mitochondrial membrane part;1.51817854121719e-20!GO:0051301;cell division;3.36108108252328e-20!GO:0051276;chromosome organization and biogenesis;3.43489446184233e-20!GO:0016462;pyrophosphatase activity;5.3884305797332e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.0003255937329e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.52065375636858e-19!GO:0031980;mitochondrial lumen;1.72168713293925e-19!GO:0005759;mitochondrial matrix;1.72168713293925e-19!GO:0017111;nucleoside-triphosphatase activity;1.82221717703439e-19!GO:0032553;ribonucleotide binding;1.82221717703439e-19!GO:0032555;purine ribonucleotide binding;1.82221717703439e-19!GO:0005730;nucleolus;3.51981284189001e-19!GO:0016874;ligase activity;1.44951570534148e-18!GO:0017076;purine nucleotide binding;2.58827729499553e-18!GO:0000279;M phase;3.45512502981355e-18!GO:0006512;ubiquitin cycle;3.5780548161645e-18!GO:0009719;response to endogenous stimulus;1.02200321585714e-17!GO:0005524;ATP binding;1.02200321585714e-17!GO:0032559;adenyl ribonucleotide binding;2.0720472547096e-17!GO:0005746;mitochondrial respiratory chain;4.62745009756935e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.45790680611068e-17!GO:0006457;protein folding;7.08907376491815e-17!GO:0006260;DNA replication;8.19286596588093e-17!GO:0008135;translation factor activity, nucleic acid binding;8.62863227397115e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.04577623751796e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;1.07670639410068e-16!GO:0042254;ribosome biogenesis and assembly;1.53638613515534e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.04937763573684e-16!GO:0003954;NADH dehydrogenase activity;3.04937763573684e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.04937763573684e-16!GO:0030554;adenyl nucleotide binding;4.32531200076414e-16!GO:0006323;DNA packaging;5.04833594868762e-16!GO:0031965;nuclear membrane;6.12865837030464e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.22144978081991e-16!GO:0005761;mitochondrial ribosome;6.73791539939616e-16!GO:0000313;organellar ribosome;6.73791539939616e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;6.7967765662722e-16!GO:0000375;RNA splicing, via transesterification reactions;6.7967765662722e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.7967765662722e-16!GO:0012505;endomembrane system;1.53594462017255e-15!GO:0044265;cellular macromolecule catabolic process;1.7118931176075e-15!GO:0044453;nuclear membrane part;2.23192239915231e-15!GO:0048770;pigment granule;2.80774130486273e-15!GO:0042470;melanosome;2.80774130486273e-15!GO:0043412;biopolymer modification;3.87026446389397e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.87026446389397e-14!GO:0042773;ATP synthesis coupled electron transport;3.87026446389397e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.34197079164809e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.61977217207153e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.99997705131412e-14!GO:0045271;respiratory chain complex I;5.99997705131412e-14!GO:0005747;mitochondrial respiratory chain complex I;5.99997705131412e-14!GO:0006511;ubiquitin-dependent protein catabolic process;6.48346289574834e-14!GO:0005643;nuclear pore;8.76688996431623e-14!GO:0019941;modification-dependent protein catabolic process;9.13168983295216e-14!GO:0043632;modification-dependent macromolecule catabolic process;9.13168983295216e-14!GO:0006605;protein targeting;1.08908442901261e-13!GO:0051186;cofactor metabolic process;1.35373809044141e-13!GO:0005635;nuclear envelope;1.39845659308292e-13!GO:0008134;transcription factor binding;1.69056694912124e-13!GO:0044257;cellular protein catabolic process;1.69056694912124e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.81422606127425e-13!GO:0003743;translation initiation factor activity;1.91189392504018e-13!GO:0006413;translational initiation;2.71695863022534e-13!GO:0016887;ATPase activity;3.61917269976473e-13!GO:0042623;ATPase activity, coupled;7.20187670313835e-13!GO:0016604;nuclear body;8.49365150398699e-13!GO:0015630;microtubule cytoskeleton;1.1564824499971e-12!GO:0065004;protein-DNA complex assembly;1.30145314519617e-12!GO:0006403;RNA localization;1.41712161042668e-12!GO:0050657;nucleic acid transport;2.02190254715179e-12!GO:0051236;establishment of RNA localization;2.02190254715179e-12!GO:0050658;RNA transport;2.02190254715179e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.46796921862773e-12!GO:0043285;biopolymer catabolic process;2.60479073795397e-12!GO:0006913;nucleocytoplasmic transport;3.11242460897776e-12!GO:0065002;intracellular protein transport across a membrane;3.81554435259708e-12!GO:0000785;chromatin;3.89215082637739e-12!GO:0009057;macromolecule catabolic process;4.7241767118203e-12!GO:0004386;helicase activity;4.95082896369362e-12!GO:0051726;regulation of cell cycle;5.36099949484618e-12!GO:0006464;protein modification process;6.1383115452157e-12!GO:0006333;chromatin assembly or disassembly;6.1795997747169e-12!GO:0000074;regulation of progression through cell cycle;6.65918384938677e-12!GO:0006732;coenzyme metabolic process;9.90562197091417e-12!GO:0051169;nuclear transport;1.01449869135306e-11!GO:0006461;protein complex assembly;1.01607437500538e-11!GO:0048193;Golgi vesicle transport;1.43842290516175e-11!GO:0006364;rRNA processing;1.86421451449893e-11!GO:0046930;pore complex;2.84424832294825e-11!GO:0051082;unfolded protein binding;2.9504022003521e-11!GO:0050794;regulation of cellular process;5.43996615593066e-11!GO:0006446;regulation of translational initiation;6.47798152032102e-11!GO:0016072;rRNA metabolic process;7.07021078069738e-11!GO:0006399;tRNA metabolic process;9.18264081905215e-11!GO:0005794;Golgi apparatus;1.04616513983337e-10!GO:0019222;regulation of metabolic process;1.10245215170976e-10!GO:0016607;nuclear speck;1.10727153637104e-10!GO:0043687;post-translational protein modification;1.16345528207372e-10!GO:0044248;cellular catabolic process;1.49738377520877e-10!GO:0030163;protein catabolic process;1.84556230044104e-10!GO:0008565;protein transporter activity;2.11034199587138e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.11779228419478e-10!GO:0008026;ATP-dependent helicase activity;2.34446388726121e-10!GO:0051028;mRNA transport;2.4993084315159e-10!GO:0000775;chromosome, pericentric region;6.43424717176323e-10!GO:0016568;chromatin modification;9.72227325516326e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.13223874616429e-09!GO:0044432;endoplasmic reticulum part;1.34848259940375e-09!GO:0005783;endoplasmic reticulum;1.44134624132147e-09!GO:0006334;nucleosome assembly;1.58588917100922e-09!GO:0006261;DNA-dependent DNA replication;1.75963918135308e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.88058641287212e-09!GO:0003697;single-stranded DNA binding;2.2420176870214e-09!GO:0031497;chromatin assembly;2.29464790276302e-09!GO:0016740;transferase activity;2.55701253472189e-09!GO:0006163;purine nucleotide metabolic process;3.29966802482567e-09!GO:0009259;ribonucleotide metabolic process;4.11956182731096e-09!GO:0043566;structure-specific DNA binding;4.33004126313437e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.68613651614168e-09!GO:0008639;small protein conjugating enzyme activity;4.930901540274e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.4047200451279e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.4047200451279e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.4047200451279e-09!GO:0016192;vesicle-mediated transport;5.655041999232e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.13189676792395e-09!GO:0004842;ubiquitin-protein ligase activity;1.24724071780351e-08!GO:0006350;transcription;1.30848540539543e-08!GO:0043038;amino acid activation;1.49001040600831e-08!GO:0006418;tRNA aminoacylation for protein translation;1.49001040600831e-08!GO:0043039;tRNA aminoacylation;1.49001040600831e-08!GO:0006164;purine nucleotide biosynthetic process;1.51376075942746e-08!GO:0005793;ER-Golgi intermediate compartment;1.6268776789894e-08!GO:0005819;spindle;1.66049109345903e-08!GO:0009150;purine ribonucleotide metabolic process;2.03323603999268e-08!GO:0031323;regulation of cellular metabolic process;2.15948972777269e-08!GO:0017038;protein import;2.29206528944863e-08!GO:0019787;small conjugating protein ligase activity;2.53259744394381e-08!GO:0015986;ATP synthesis coupled proton transport;3.69316664690753e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.69316664690753e-08!GO:0005667;transcription factor complex;3.93808530403833e-08!GO:0006366;transcription from RNA polymerase II promoter;5.28895098001582e-08!GO:0043623;cellular protein complex assembly;5.37487761649976e-08!GO:0009060;aerobic respiration;6.50536985778465e-08!GO:0009260;ribonucleotide biosynthetic process;7.08069203478025e-08!GO:0000245;spliceosome assembly;9.55439239969574e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.55441695547691e-08!GO:0045333;cellular respiration;1.05570431908912e-07!GO:0008094;DNA-dependent ATPase activity;1.44876201460604e-07!GO:0019829;cation-transporting ATPase activity;1.46052857257562e-07!GO:0051188;cofactor biosynthetic process;1.49848193291807e-07!GO:0003712;transcription cofactor activity;1.51345673325607e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.06215340567186e-07!GO:0009055;electron carrier activity;2.13164706851468e-07!GO:0032446;protein modification by small protein conjugation;2.58872223723814e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.80080353141783e-07!GO:0010468;regulation of gene expression;3.13933687266805e-07!GO:0007051;spindle organization and biogenesis;3.49691362542442e-07!GO:0009141;nucleoside triphosphate metabolic process;3.64405440695057e-07!GO:0050789;regulation of biological process;3.85946199385032e-07!GO:0016881;acid-amino acid ligase activity;4.31517449681808e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.31517449681808e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.31517449681808e-07!GO:0016779;nucleotidyltransferase activity;4.79374523772836e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.03076628392025e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.03076628392025e-07!GO:0046034;ATP metabolic process;5.81472719573611e-07!GO:0016567;protein ubiquitination;6.24523836677795e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.34438612486546e-07!GO:0006754;ATP biosynthetic process;6.39710873443147e-07!GO:0006753;nucleoside phosphate metabolic process;6.39710873443147e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.57581902562054e-07!GO:0051329;interphase of mitotic cell cycle;6.73226019585502e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.91489809983555e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.91489809983555e-07!GO:0006752;group transfer coenzyme metabolic process;8.49803938780245e-07!GO:0005789;endoplasmic reticulum membrane;1.00994164582678e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.02582374900694e-06!GO:0032774;RNA biosynthetic process;1.05874732936017e-06!GO:0005813;centrosome;1.17488137313434e-06!GO:0006099;tricarboxylic acid cycle;1.19212663375164e-06!GO:0046356;acetyl-CoA catabolic process;1.19212663375164e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.24580713223098e-06!GO:0003677;DNA binding;1.25466933945414e-06!GO:0006793;phosphorus metabolic process;1.27155173114785e-06!GO:0006796;phosphate metabolic process;1.27155173114785e-06!GO:0045259;proton-transporting ATP synthase complex;1.28986926093391e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.39822515808715e-06!GO:0006351;transcription, DNA-dependent;1.41717045480432e-06!GO:0048475;coated membrane;1.54175046500919e-06!GO:0030117;membrane coat;1.54175046500919e-06!GO:0005657;replication fork;1.64823980859131e-06!GO:0003899;DNA-directed RNA polymerase activity;1.82451761419889e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.82531772555162e-06!GO:0009108;coenzyme biosynthetic process;1.98520158915291e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.10186850360642e-06!GO:0006084;acetyl-CoA metabolic process;2.36359449308174e-06!GO:0016853;isomerase activity;2.37128820425542e-06!GO:0007010;cytoskeleton organization and biogenesis;2.63798690690053e-06!GO:0005815;microtubule organizing center;3.10007152781766e-06!GO:0051170;nuclear import;4.45268444670138e-06!GO:0016310;phosphorylation;4.59243784948691e-06!GO:0005762;mitochondrial large ribosomal subunit;4.65503212860123e-06!GO:0000315;organellar large ribosomal subunit;4.65503212860123e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.73728830116838e-06!GO:0000075;cell cycle checkpoint;4.76524766151519e-06!GO:0051168;nuclear export;5.28246680216937e-06!GO:0005874;microtubule;5.2941065346868e-06!GO:0007005;mitochondrion organization and biogenesis;5.69783121770826e-06!GO:0031324;negative regulation of cellular metabolic process;6.11229520665257e-06!GO:0051325;interphase;6.12601103731289e-06!GO:0000151;ubiquitin ligase complex;6.57141687015215e-06!GO:0006606;protein import into nucleus;7.05060930659408e-06!GO:0016363;nuclear matrix;9.27580421012598e-06!GO:0009056;catabolic process;9.66693983551442e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.00491537534508e-05!GO:0003724;RNA helicase activity;1.07358751969254e-05!GO:0009117;nucleotide metabolic process;1.152031137013e-05!GO:0030120;vesicle coat;1.31227095513083e-05!GO:0030662;coated vesicle membrane;1.31227095513083e-05!GO:0045449;regulation of transcription;1.35583804532055e-05!GO:0012501;programmed cell death;1.38841030698596e-05!GO:0006613;cotranslational protein targeting to membrane;1.55427414835473e-05!GO:0008654;phospholipid biosynthetic process;1.73488480655747e-05!GO:0006915;apoptosis;1.79873148089586e-05!GO:0000786;nucleosome;2.08102836392329e-05!GO:0009109;coenzyme catabolic process;2.29154672204909e-05!GO:0009892;negative regulation of metabolic process;2.36002062377356e-05!GO:0003924;GTPase activity;2.458888709746e-05!GO:0000314;organellar small ribosomal subunit;2.53142950259891e-05!GO:0005763;mitochondrial small ribosomal subunit;2.53142950259891e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.39140064998398e-05!GO:0048523;negative regulation of cellular process;3.48776807467655e-05!GO:0051246;regulation of protein metabolic process;3.51330071876041e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.77279204734773e-05!GO:0006302;double-strand break repair;4.00666364992197e-05!GO:0007017;microtubule-based process;4.03767562038073e-05!GO:0003684;damaged DNA binding;4.18591386832903e-05!GO:0000776;kinetochore;5.20945574170629e-05!GO:0051427;hormone receptor binding;5.35198118270571e-05!GO:0016859;cis-trans isomerase activity;5.61572793170043e-05!GO:0031252;leading edge;5.69241003001092e-05!GO:0045786;negative regulation of progression through cell cycle;6.00020296666686e-05!GO:0016564;transcription repressor activity;6.00197427382003e-05!GO:0044431;Golgi apparatus part;6.1339827240398e-05!GO:0005525;GTP binding;7.93762893378621e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.54678897538509e-05!GO:0051187;cofactor catabolic process;9.62182702176526e-05!GO:0007059;chromosome segregation;9.62182702176526e-05!GO:0006355;regulation of transcription, DNA-dependent;0.000101420546431996!GO:0005798;Golgi-associated vesicle;0.00011300958006578!GO:0035257;nuclear hormone receptor binding;0.000117379768903453!GO:0003690;double-stranded DNA binding;0.0001181618757231!GO:0006338;chromatin remodeling;0.0001181618757231!GO:0016481;negative regulation of transcription;0.000126096812754628!GO:0015980;energy derivation by oxidation of organic compounds;0.000140876403695708!GO:0003682;chromatin binding;0.000169211218264656!GO:0006402;mRNA catabolic process;0.000171718960270402!GO:0008219;cell death;0.00018656361042296!GO:0016265;death;0.00018656361042296!GO:0043021;ribonucleoprotein binding;0.000193088840023958!GO:0000059;protein import into nucleus, docking;0.000193088840023958!GO:0003678;DNA helicase activity;0.000194800319777768!GO:0005768;endosome;0.000199365324068101!GO:0016563;transcription activator activity;0.000208451237876695!GO:0008186;RNA-dependent ATPase activity;0.000211984166975429!GO:0005839;proteasome core complex (sensu Eukaryota);0.000221572967911072!GO:0031988;membrane-bound vesicle;0.000243861737754595!GO:0006310;DNA recombination;0.000251376278952413!GO:0006383;transcription from RNA polymerase III promoter;0.000252352629227004!GO:0016741;transferase activity, transferring one-carbon groups;0.000307329691227037!GO:0003729;mRNA binding;0.000321171453527666!GO:0005048;signal sequence binding;0.000334046048644514!GO:0008168;methyltransferase activity;0.000335123012968636!GO:0008250;oligosaccharyl transferase complex;0.00034569293280866!GO:0030867;rough endoplasmic reticulum membrane;0.000352172768814567!GO:0016023;cytoplasmic membrane-bound vesicle;0.000355063162521084!GO:0005788;endoplasmic reticulum lumen;0.000358182261859627!GO:0003714;transcription corepressor activity;0.000360620368678548!GO:0005770;late endosome;0.000368770900462593!GO:0007052;mitotic spindle organization and biogenesis;0.000375010130670144!GO:0004576;oligosaccharyl transferase activity;0.000409849460421604!GO:0006414;translational elongation;0.000425855399963525!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000428122717951984!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000433958677736288!GO:0045454;cell redox homeostasis;0.000458779660044519!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000466658789275949!GO:0032508;DNA duplex unwinding;0.000467485163188403!GO:0032392;DNA geometric change;0.000467485163188403!GO:0000792;heterochromatin;0.000471299928315474!GO:0048519;negative regulation of biological process;0.000514056058789522!GO:0051052;regulation of DNA metabolic process;0.000540320087023154!GO:0031982;vesicle;0.000550423117254385!GO:0019843;rRNA binding;0.000597239262720242!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000603070884757654!GO:0004004;ATP-dependent RNA helicase activity;0.000614327285843657!GO:0044452;nucleolar part;0.000623747509750976!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000624654054456978!GO:0043681;protein import into mitochondrion;0.000629712768720097!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000635844130331743!GO:0016126;sterol biosynthetic process;0.000657631659310993!GO:0004298;threonine endopeptidase activity;0.000673174012476784!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000739638811855926!GO:0007093;mitotic cell cycle checkpoint;0.000743323832807327!GO:0005637;nuclear inner membrane;0.000758579423089243!GO:0018196;peptidyl-asparagine modification;0.000777104051411515!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000777104051411515!GO:0006268;DNA unwinding during replication;0.000781268989766526!GO:0030880;RNA polymerase complex;0.000781458421599103!GO:0065007;biological regulation;0.000786520836931561!GO:0051920;peroxiredoxin activity;0.000828202901728773!GO:0051087;chaperone binding;0.000849866868035545!GO:0006405;RNA export from nucleus;0.000852497806346921!GO:0048471;perinuclear region of cytoplasm;0.000869271431792105!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000871506035790182!GO:0042802;identical protein binding;0.000886109793168882!GO:0005684;U2-dependent spliceosome;0.000914542550570687!GO:0046474;glycerophospholipid biosynthetic process;0.000921444277260682!GO:0006352;transcription initiation;0.00092366256450876!GO:0015631;tubulin binding;0.00103779987885003!GO:0000228;nuclear chromosome;0.00105127367973469!GO:0031410;cytoplasmic vesicle;0.00108054891658767!GO:0043284;biopolymer biosynthetic process;0.00112353178692529!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116996202062219!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116996202062219!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116996202062219!GO:0007088;regulation of mitosis;0.00119312910595287!GO:0032561;guanyl ribonucleotide binding;0.00119312910595287!GO:0019001;guanyl nucleotide binding;0.00119312910595287!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00119352741589678!GO:0006612;protein targeting to membrane;0.00122893201787293!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00131482849565295!GO:0006401;RNA catabolic process;0.00132323112183154!GO:0008033;tRNA processing;0.00132969949519783!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00133543274605911!GO:0003713;transcription coactivator activity;0.00142988523405459!GO:0005885;Arp2/3 protein complex;0.00145808773724419!GO:0004674;protein serine/threonine kinase activity;0.00156715745346576!GO:0009165;nucleotide biosynthetic process;0.00157242226608238!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0016255854002873!GO:0000428;DNA-directed RNA polymerase complex;0.0016255854002873!GO:0048500;signal recognition particle;0.00164365636543153!GO:0006626;protein targeting to mitochondrion;0.00166890601255586!GO:0048487;beta-tubulin binding;0.00182110645511291!GO:0000139;Golgi membrane;0.00182681224932097!GO:0043414;biopolymer methylation;0.0018484931329987!GO:0046489;phosphoinositide biosynthetic process;0.00189330749383039!GO:0008139;nuclear localization sequence binding;0.00208676106107512!GO:0006839;mitochondrial transport;0.00210142809557703!GO:0043069;negative regulation of programmed cell death;0.00228855759155554!GO:0006891;intra-Golgi vesicle-mediated transport;0.0023957960123478!GO:0030118;clathrin coat;0.00240068972255098!GO:0006289;nucleotide-excision repair;0.00244387123065521!GO:0006695;cholesterol biosynthetic process;0.002472050284455!GO:0043066;negative regulation of apoptosis;0.00252934522867435!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00254477811514458!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00254477811514458!GO:0045892;negative regulation of transcription, DNA-dependent;0.00261606201433775!GO:0000082;G1/S transition of mitotic cell cycle;0.00272380287571945!GO:0016787;hydrolase activity;0.00280990824397251!GO:0004527;exonuclease activity;0.00282260027049301!GO:0032259;methylation;0.00294369586189498!GO:0031124;mRNA 3'-end processing;0.00317444482176723!GO:0007006;mitochondrial membrane organization and biogenesis;0.0032532565704565!GO:0044440;endosomal part;0.0032536526612974!GO:0010008;endosome membrane;0.0032536526612974!GO:0006275;regulation of DNA replication;0.00326044619414953!GO:0000922;spindle pole;0.00328891243344215!GO:0005769;early endosome;0.00328891243344215!GO:0005876;spindle microtubule;0.00334547945535621!GO:0030036;actin cytoskeleton organization and biogenesis;0.00345609443333495!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00358637445875654!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0036223590154128!GO:0006284;base-excision repair;0.00362509193844608!GO:0008312;7S RNA binding;0.00365552764478198!GO:0000725;recombinational repair;0.00377927499612038!GO:0000724;double-strand break repair via homologous recombination;0.00377927499612038!GO:0033116;ER-Golgi intermediate compartment membrane;0.00392714210342498!GO:0016272;prefoldin complex;0.00404402494625143!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00419155454278165!GO:0045047;protein targeting to ER;0.00419155454278165!GO:0043624;cellular protein complex disassembly;0.00419789773895498!GO:0008022;protein C-terminus binding;0.0041998954868685!GO:0006611;protein export from nucleus;0.00445142619333907!GO:0046467;membrane lipid biosynthetic process;0.00457689019072107!GO:0022890;inorganic cation transmembrane transporter activity;0.00464476195777452!GO:0006270;DNA replication initiation;0.00490912083748992!GO:0005791;rough endoplasmic reticulum;0.00496581033156921!GO:0008180;signalosome;0.00496898769045832!GO:0006730;one-carbon compound metabolic process;0.00507421744028596!GO:0006595;polyamine metabolic process;0.00529912755133233!GO:0005905;coated pit;0.00534354920567679!GO:0007264;small GTPase mediated signal transduction;0.00574685270042607!GO:0043596;nuclear replication fork;0.0057983764508038!GO:0005869;dynactin complex;0.00583808885589525!GO:0001558;regulation of cell growth;0.00589735515498765!GO:0000049;tRNA binding;0.00592505488603327!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00597962784732134!GO:0015992;proton transport;0.00598996059828817!GO:0019899;enzyme binding;0.00599623113519594!GO:0008361;regulation of cell size;0.00624563191167909!GO:0006818;hydrogen transport;0.00631141547878487!GO:0030663;COPI coated vesicle membrane;0.00631141547878487!GO:0030126;COPI vesicle coat;0.00631141547878487!GO:0016251;general RNA polymerase II transcription factor activity;0.00632639610439282!GO:0044454;nuclear chromosome part;0.00658804119939867!GO:0004003;ATP-dependent DNA helicase activity;0.00662811634027803!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00669425638628509!GO:0040029;regulation of gene expression, epigenetic;0.00707385686420878!GO:0006378;mRNA polyadenylation;0.00744358306849473!GO:0031570;DNA integrity checkpoint;0.00745699208738188!GO:0042393;histone binding;0.00750657228769918!GO:0051252;regulation of RNA metabolic process;0.00759783115954521!GO:0032984;macromolecular complex disassembly;0.00767826482801857!GO:0003746;translation elongation factor activity;0.00786861517529579!GO:0006916;anti-apoptosis;0.00802741182296422!GO:0005832;chaperonin-containing T-complex;0.00829707813123189!GO:0043022;ribosome binding;0.00839847637012956!GO:0031123;RNA 3'-end processing;0.00839847637012956!GO:0051789;response to protein stimulus;0.0084039025545482!GO:0006986;response to unfolded protein;0.0084039025545482!GO:0016301;kinase activity;0.00856814423110832!GO:0030137;COPI-coated vesicle;0.00881777969078759!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00928777534516878!GO:0015399;primary active transmembrane transporter activity;0.00928777534516878!GO:0000339;RNA cap binding;0.0092955189787661!GO:0016049;cell growth;0.00932266624518962!GO:0030658;transport vesicle membrane;0.00932578564677615!GO:0042158;lipoprotein biosynthetic process;0.00945090661307783!GO:0008092;cytoskeletal protein binding;0.00985067701238244!GO:0043241;protein complex disassembly;0.00988553621635978!GO:0030029;actin filament-based process;0.00989119454272481!GO:0000209;protein polyubiquitination;0.00989119454272481!GO:0008270;zinc ion binding;0.00993123586967019!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0101026536922585!GO:0009112;nucleobase metabolic process;0.0102994783404046!GO:0000178;exosome (RNase complex);0.0105676380186964!GO:0005875;microtubule associated complex;0.0111056667882837!GO:0006497;protein amino acid lipidation;0.0112909569461221!GO:0042981;regulation of apoptosis;0.0118127622400122!GO:0044262;cellular carbohydrate metabolic process;0.0120601364105666!GO:0043601;nuclear replisome;0.0121973626986493!GO:0030894;replisome;0.0121973626986493!GO:0043488;regulation of mRNA stability;0.0123462056247561!GO:0043487;regulation of RNA stability;0.0123462056247561!GO:0030384;phosphoinositide metabolic process;0.0124078342346478!GO:0001726;ruffle;0.0124711223449288!GO:0003711;transcription elongation regulator activity;0.0125669602673201!GO:0006144;purine base metabolic process;0.0127207875443566!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0127207875443566!GO:0043067;regulation of programmed cell death;0.0127581039384058!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0128895847664742!GO:0017166;vinculin binding;0.0131994621178662!GO:0000790;nuclear chromatin;0.0133655319855271!GO:0016584;nucleosome positioning;0.0140180230528578!GO:0006541;glutamine metabolic process;0.0140180230528578!GO:0006740;NADPH regeneration;0.0145960782895776!GO:0006098;pentose-phosphate shunt;0.0145960782895776!GO:0008017;microtubule binding;0.0156852455382045!GO:0006506;GPI anchor biosynthetic process;0.0158650454669575!GO:0005669;transcription factor TFIID complex;0.0159316062639504!GO:0006007;glucose catabolic process;0.0162276123364437!GO:0042770;DNA damage response, signal transduction;0.0164235401927585!GO:0035258;steroid hormone receptor binding;0.0167983922370658!GO:0000819;sister chromatid segregation;0.0168445787189106!GO:0030119;AP-type membrane coat adaptor complex;0.0170594977208641!GO:0006650;glycerophospholipid metabolic process;0.0170805062774137!GO:0007021;tubulin folding;0.0171247812210871!GO:0006376;mRNA splice site selection;0.0172871318072015!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0172871318072015!GO:0030660;Golgi-associated vesicle membrane;0.0173427824470307!GO:0000070;mitotic sister chromatid segregation;0.0173717946998587!GO:0030134;ER to Golgi transport vesicle;0.0179795082879866!GO:0009116;nucleoside metabolic process;0.0180204398388313!GO:0006505;GPI anchor metabolic process;0.0180605062255731!GO:0009303;rRNA transcription;0.0187091092771481!GO:0030027;lamellipodium;0.0188653708458416!GO:0005758;mitochondrial intermembrane space;0.019648745159629!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0197193082051918!GO:0015002;heme-copper terminal oxidase activity;0.0197193082051918!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0197193082051918!GO:0004129;cytochrome-c oxidase activity;0.0197193082051918!GO:0031968;organelle outer membrane;0.0197704955386698!GO:0019747;regulation of isoprenoid metabolic process;0.0200420294889829!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.020133473277229!GO:0005741;mitochondrial outer membrane;0.0201464517170886!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0203006348844167!GO:0030521;androgen receptor signaling pathway;0.0204343198280394!GO:0030496;midbody;0.0205518555097185!GO:0030131;clathrin adaptor complex;0.0205518555097185!GO:0051053;negative regulation of DNA metabolic process;0.0207164433088702!GO:0007050;cell cycle arrest;0.0208798406192975!GO:0008276;protein methyltransferase activity;0.0210812041778947!GO:0008610;lipid biosynthetic process;0.021583779344872!GO:0001824;blastocyst development;0.0220673154488635!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0222240459251977!GO:0010257;NADH dehydrogenase complex assembly;0.0222240459251977!GO:0033108;mitochondrial respiratory chain complex assembly;0.0222240459251977!GO:0000077;DNA damage checkpoint;0.0228269166633818!GO:0000910;cytokinesis;0.0228678173380557!GO:0005850;eukaryotic translation initiation factor 2 complex;0.022876344118998!GO:0016491;oxidoreductase activity;0.0232586449962551!GO:0030133;transport vesicle;0.0233623128272769!GO:0006091;generation of precursor metabolites and energy;0.0238919947564437!GO:0004532;exoribonuclease activity;0.0251176263159597!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0251176263159597!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0252197288242957!GO:0000118;histone deacetylase complex;0.0256594157109891!GO:0046426;negative regulation of JAK-STAT cascade;0.0260033779742057!GO:0019867;outer membrane;0.0261777999846751!GO:0008320;protein transmembrane transporter activity;0.0263674926468244!GO:0030176;integral to endoplasmic reticulum membrane;0.0264409518693754!GO:0035267;NuA4 histone acetyltransferase complex;0.0268191124568624!GO:0022884;macromolecule transmembrane transporter activity;0.0268191124568624!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0268191124568624!GO:0030127;COPII vesicle coat;0.0268372767568058!GO:0012507;ER to Golgi transport vesicle membrane;0.0268372767568058!GO:0051287;NAD binding;0.0280122048926468!GO:0050750;low-density lipoprotein receptor binding;0.0280264956313074!GO:0004523;ribonuclease H activity;0.028165579449364!GO:0004722;protein serine/threonine phosphatase activity;0.0284498699732035!GO:0031371;ubiquitin conjugating enzyme complex;0.0284752259316585!GO:0001832;blastocyst growth;0.0284752259316585!GO:0043631;RNA polyadenylation;0.0284804996966529!GO:0005784;translocon complex;0.0297107463223245!GO:0032200;telomere organization and biogenesis;0.0297495887662368!GO:0000723;telomere maintenance;0.0297495887662368!GO:0006892;post-Golgi vesicle-mediated transport;0.0302517816622899!GO:0009451;RNA modification;0.030900390167822!GO:0005652;nuclear lamina;0.0309104867865923!GO:0042769;DNA damage response, detection of DNA damage;0.0309120526985899!GO:0008536;Ran GTPase binding;0.0314005196411195!GO:0005663;DNA replication factor C complex;0.0315302324018976!GO:0045045;secretory pathway;0.0315760319924829!GO:0006643;membrane lipid metabolic process;0.0318249340970993!GO:0005773;vacuole;0.0327760526398741!GO:0006520;amino acid metabolic process;0.0327833656682587!GO:0007346;regulation of progression through mitotic cell cycle;0.0329602313498831!GO:0008538;proteasome activator activity;0.0329602313498831!GO:0016407;acetyltransferase activity;0.0330749788818807!GO:0030041;actin filament polymerization;0.0330920789573798!GO:0005720;nuclear heterochromatin;0.0331343691698237!GO:0003756;protein disulfide isomerase activity;0.0331560793041204!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0331560793041204!GO:0000123;histone acetyltransferase complex;0.033181229524317!GO:0000793;condensed chromosome;0.033181229524317!GO:0045893;positive regulation of transcription, DNA-dependent;0.0341156105392541!GO:0043189;H4/H2A histone acetyltransferase complex;0.0341264276093224!GO:0008143;poly(A) binding;0.0342328438822888!GO:0008287;protein serine/threonine phosphatase complex;0.0349094175293676!GO:0031369;translation initiation factor binding;0.0362960932649289!GO:0031970;organelle envelope lumen;0.0363659008027568!GO:0030508;thiol-disulfide exchange intermediate activity;0.037455823292945!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0384055400476398!GO:0045792;negative regulation of cell size;0.0395131985052734!GO:0005844;polysome;0.0395624330115959!GO:0046966;thyroid hormone receptor binding;0.0397822542336001!GO:0000152;nuclear ubiquitin ligase complex;0.0398449666884247!GO:0046914;transition metal ion binding;0.0403841502671343!GO:0000096;sulfur amino acid metabolic process;0.0404389933485339!GO:0000726;non-recombinational repair;0.0408461599839156!GO:0031577;spindle checkpoint;0.04100369490597!GO:0051101;regulation of DNA binding;0.0413249197804865!GO:0040008;regulation of growth;0.041434879438821!GO:0016835;carbon-oxygen lyase activity;0.0417775917952317!GO:0031072;heat shock protein binding;0.041943673958736!GO:0006509;membrane protein ectodomain proteolysis;0.0424996703431974!GO:0033619;membrane protein proteolysis;0.0424996703431974!GO:0005881;cytoplasmic microtubule;0.0426651706627764!GO:0007030;Golgi organization and biogenesis;0.0435841839752707!GO:0031625;ubiquitin protein ligase binding;0.0436358342106199!GO:0030911;TPR domain binding;0.044492571724067!GO:0030145;manganese ion binding;0.0448845611442516!GO:0008154;actin polymerization and/or depolymerization;0.0456286957208717!GO:0008097;5S rRNA binding;0.0461678582025333!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0466239697147774!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0466239697147774!GO:0006607;NLS-bearing substrate import into nucleus;0.0471106207497575!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.047270288875314!GO:0045947;negative regulation of translational initiation;0.047270288875314!GO:0051539;4 iron, 4 sulfur cluster binding;0.0473575888539739!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0473575888539739!GO:0031902;late endosome membrane;0.0484063700319506!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0484243936230547!GO:0000781;chromosome, telomeric region;0.048547230231935!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0493956772822952!GO:0050811;GABA receptor binding;0.0495492497129183!GO:0035020;regulation of Rac protein signal transduction;0.0499526699480558!GO:0030308;negative regulation of cell growth;0.0499841297248589!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0499841297248589 | |||
|sample_id=10798 | |sample_id=10798 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=testis | |sample_tissue=testis | ||
|top_motifs=RBPJ:2.24919222685;PITX1..3:2.16277998869;PBX1:2.13629247099;TBX4,5:2.03611925988;TOPORS:1.83875266435;VSX1,2:1.79536174453;ELK1,4_GABP{A,B1}:1.78676163572;PATZ1:1.74596628744;E2F1..5:1.69043463025;LEF1_TCF7_TCF7L1,2:1.57427748302;NFY{A,B,C}:1.45105701045;GFI1:1.42507972404;CDX1,2,4:1.39533050181;FOXP1:1.33556331664;FOX{I1,J2}:1.25696323926;TFDP1:1.24627225224;ONECUT1,2:1.09330001162;LHX3,4:1.02497745341;ZNF143:1.01388435016;PAX1,9:1.00060187043;T:0.967813038283;MAZ:0.957485991858;YY1:0.928771045597;ZNF384:0.896697672745;CRX:0.890296984302;POU3F1..4:0.890099087837;SOX{8,9,10}:0.842103394331;HOXA9_MEIS1:0.835591601566;PAX3,7:0.788333202351;GATA6:0.784308620604;TFAP2{A,C}:0.76943641935;FOXQ1:0.760084643414;STAT5{A,B}:0.755264771728;NKX2-3_NKX2-5:0.733021113524;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.724593755478;FOXD3:0.702142817445;MYB:0.663535867324;POU2F1..3:0.655451010757;BREu{core}:0.64611452156;RFX2..5_RFXANK_RFXAP:0.638099730983;XCPE1{core}:0.629169104383;PAX4:0.627563247486;NANOG{mouse}:0.626843285222;SP1:0.606769780521;ZIC1..3:0.596096656053;NANOG:0.553663381367;KLF4:0.552907702927;OCT4_SOX2{dimer}:0.549103016866;AIRE:0.547737565178;POU1F1:0.538533107856;NKX6-1,2:0.510000388403;RFX1:0.500825377244;IKZF2:0.479070157195;MZF1:0.466522333175;TEF:0.455706458183;ARID5B:0.432076973137;FOXL1:0.425952045005;TEAD1:0.416144812025;PRRX1,2:0.397672815047;RXR{A,B,G}:0.395367721133;PAX5:0.37344499402;ALX1:0.359095778842;HOX{A6,A7,B6,B7}:0.337720071994;FOXM1:0.336078611835;RORA:0.333083840662;HOX{A4,D4}:0.320580648079;GTF2A1,2:0.313290115779;EVI1:0.311664602766;HOX{A5,B5}:0.277050554852;MED-1{core}:0.251859519889;FOXN1:0.234324470209;PPARG:0.23364167848;UFEwm:0.227592561722;RREB1:0.21510063029;NRF1:0.193627614965;ESR1:0.181663351585;TFAP2B:0.155504664763;TFCP2:0.153180334058;HNF4A_NR2F1,2:0.135495522743;MEF2{A,B,C,D}:0.131840072135;SOX17:0.118635204247;GTF2I:0.106872450706;SNAI1..3:0.081368058117;ZBTB6:0.0653448148059;CREB1:0.0641729202334;GFI1B:0.0591715818889;HMX1:0.058651968814;ZNF148:0.0493880928588;TP53:0.037663930004;RXRA_VDR{dimer}:-0.0101007728457;ZNF423:-0.0113164817076;AHR_ARNT_ARNT2:-0.0119058634778;ZBTB16:-0.0160057983038;CUX2:-0.0165160235609;STAT1,3:-0.0270208277883;ATF6:-0.028740583409;HNF1A:-0.0298653858948;TBP:-0.0357000930992;PRDM1:-0.0430062933025;NKX3-2:-0.0524586675558;HBP1_HMGB_SSRP1_UBTF:-0.0571401168703;NKX2-1,4:-0.118547760402;ATF2:-0.127508410673;PAX8:-0.135749340503;GLI1..3:-0.138674713047;FOXA2:-0.144094197497;ELF1,2,4:-0.15359025995;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.164505176113;ESRRA:-0.165549724762;EP300:-0.18087829424;NR1H4:-0.193777418294;HIC1:-0.194728303263;NR3C1:-0.206091124914;MYBL2:-0.215259300403;DBP:-0.22939864921;EBF1:-0.243499003751;TFAP4:-0.245402627785;POU6F1:-0.254634312091;SPZ1:-0.255997305012;REST:-0.304602797545;EN1,2:-0.305209188635;TGIF1:-0.306698881025;ATF5_CREB3:-0.316158610654;ZFP161:-0.322770571803;SRF:-0.323619908566;bHLH_family:-0.352234447907;CDC5L:-0.354688474749;ADNP_IRX_SIX_ZHX:-0.361239144037;ZEB1:-0.367561304745;FOX{D1,D2}:-0.381149503167;EGR1..3:-0.387580326178;NKX3-1:-0.428347426716;NFKB1_REL_RELA:-0.439134727362;NFIX:-0.462647695037;IKZF1:-0.473497283771;NKX2-2,8:-0.473892925257;TLX1..3_NFIC{dimer}:-0.47554558907;ALX4:-0.478104077149;JUN:-0.483805221696;GATA4:-0.492887751943;SOX5:-0.496241439988;XBP1:-0.504778286018;FOSL2:-0.508394381209;SREBF1,2:-0.524072936615;ATF4:-0.527802814534;POU5F1:-0.52927021879;DMAP1_NCOR{1,2}_SMARC:-0.553174837068;SPIB:-0.558512726396;ZNF238:-0.573233829216;BACH2:-0.581313954652;PAX2:-0.586374558079;SPI1:-0.595403035839;MTE{core}:-0.596425779137;PDX1:-0.603785184515;HMGA1,2:-0.612387208211;SOX2:-0.627630810085;FOXP3:-0.642995868436;NFE2L2:-0.681968439886;GCM1,2:-0.686427172536;MYOD1:-0.724975041596;SMAD1..7,9:-0.725056481031;AR:-0.727315479819;MYFfamily:-0.734611546823;MTF1:-0.738268381212;RUNX1..3:-0.740423694822;NR5A1,2:-0.748842022532;FOX{F1,F2,J1}:-0.754215268547;LMO2:-0.75541398337;TAL1_TCF{3,4,12}:-0.755977589668;PAX6:-0.759061500612;HAND1,2:-0.771210650195;FOS_FOS{B,L1}_JUN{B,D}:-0.800782846215;NHLH1,2:-0.802484521404;NFE2:-0.814005480739;BPTF:-0.827178633664;FOXO1,3,4:-0.841221111479;CEBPA,B_DDIT3:-0.842943104124;ETS1,2:-0.922553321207;HLF:-0.944924594739;TLX2:-0.965842974219;NFIL3:-1.07468212878;STAT2,4,6:-1.26808520581;IRF7:-1.41740840403;HSF1,2:-1.48411554983;MAFB:-1.51851250496;NR6A1:-1.59598187738;NFATC1..3:-1.62083067125;IRF1,2:-1.68169693544;GZF1:-1.91159945558;NFE2L1:-1.92861066927;HES1:-2.04292694059;HIF1A:-2.4885139186 | |top_motifs=RBPJ:2.24919222685;PITX1..3:2.16277998869;PBX1:2.13629247099;TBX4,5:2.03611925988;TOPORS:1.83875266435;VSX1,2:1.79536174453;ELK1,4_GABP{A,B1}:1.78676163572;PATZ1:1.74596628744;E2F1..5:1.69043463025;LEF1_TCF7_TCF7L1,2:1.57427748302;NFY{A,B,C}:1.45105701045;GFI1:1.42507972404;CDX1,2,4:1.39533050181;FOXP1:1.33556331664;FOX{I1,J2}:1.25696323926;TFDP1:1.24627225224;ONECUT1,2:1.09330001162;LHX3,4:1.02497745341;ZNF143:1.01388435016;PAX1,9:1.00060187043;T:0.967813038283;MAZ:0.957485991858;YY1:0.928771045597;ZNF384:0.896697672745;CRX:0.890296984302;POU3F1..4:0.890099087837;SOX{8,9,10}:0.842103394331;HOXA9_MEIS1:0.835591601566;PAX3,7:0.788333202351;GATA6:0.784308620604;TFAP2{A,C}:0.76943641935;FOXQ1:0.760084643414;STAT5{A,B}:0.755264771728;NKX2-3_NKX2-5:0.733021113524;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.724593755478;FOXD3:0.702142817445;MYB:0.663535867324;POU2F1..3:0.655451010757;BREu{core}:0.64611452156;RFX2..5_RFXANK_RFXAP:0.638099730983;XCPE1{core}:0.629169104383;PAX4:0.627563247486;NANOG{mouse}:0.626843285222;SP1:0.606769780521;ZIC1..3:0.596096656053;NANOG:0.553663381367;KLF4:0.552907702927;OCT4_SOX2{dimer}:0.549103016866;AIRE:0.547737565178;POU1F1:0.538533107856;NKX6-1,2:0.510000388403;RFX1:0.500825377244;IKZF2:0.479070157195;MZF1:0.466522333175;TEF:0.455706458183;ARID5B:0.432076973137;FOXL1:0.425952045005;TEAD1:0.416144812025;PRRX1,2:0.397672815047;RXR{A,B,G}:0.395367721133;PAX5:0.37344499402;ALX1:0.359095778842;HOX{A6,A7,B6,B7}:0.337720071994;FOXM1:0.336078611835;RORA:0.333083840662;HOX{A4,D4}:0.320580648079;GTF2A1,2:0.313290115779;EVI1:0.311664602766;HOX{A5,B5}:0.277050554852;MED-1{core}:0.251859519889;FOXN1:0.234324470209;PPARG:0.23364167848;UFEwm:0.227592561722;RREB1:0.21510063029;NRF1:0.193627614965;ESR1:0.181663351585;TFAP2B:0.155504664763;TFCP2:0.153180334058;HNF4A_NR2F1,2:0.135495522743;MEF2{A,B,C,D}:0.131840072135;SOX17:0.118635204247;GTF2I:0.106872450706;SNAI1..3:0.081368058117;ZBTB6:0.0653448148059;CREB1:0.0641729202334;GFI1B:0.0591715818889;HMX1:0.058651968814;ZNF148:0.0493880928588;TP53:0.037663930004;RXRA_VDR{dimer}:-0.0101007728457;ZNF423:-0.0113164817076;AHR_ARNT_ARNT2:-0.0119058634778;ZBTB16:-0.0160057983038;CUX2:-0.0165160235609;STAT1,3:-0.0270208277883;ATF6:-0.028740583409;HNF1A:-0.0298653858948;TBP:-0.0357000930992;PRDM1:-0.0430062933025;NKX3-2:-0.0524586675558;HBP1_HMGB_SSRP1_UBTF:-0.0571401168703;NKX2-1,4:-0.118547760402;ATF2:-0.127508410673;PAX8:-0.135749340503;GLI1..3:-0.138674713047;FOXA2:-0.144094197497;ELF1,2,4:-0.15359025995;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.164505176113;ESRRA:-0.165549724762;EP300:-0.18087829424;NR1H4:-0.193777418294;HIC1:-0.194728303263;NR3C1:-0.206091124914;MYBL2:-0.215259300403;DBP:-0.22939864921;EBF1:-0.243499003751;TFAP4:-0.245402627785;POU6F1:-0.254634312091;SPZ1:-0.255997305012;REST:-0.304602797545;EN1,2:-0.305209188635;TGIF1:-0.306698881025;ATF5_CREB3:-0.316158610654;ZFP161:-0.322770571803;SRF:-0.323619908566;bHLH_family:-0.352234447907;CDC5L:-0.354688474749;ADNP_IRX_SIX_ZHX:-0.361239144037;ZEB1:-0.367561304745;FOX{D1,D2}:-0.381149503167;EGR1..3:-0.387580326178;NKX3-1:-0.428347426716;NFKB1_REL_RELA:-0.439134727362;NFIX:-0.462647695037;IKZF1:-0.473497283771;NKX2-2,8:-0.473892925257;TLX1..3_NFIC{dimer}:-0.47554558907;ALX4:-0.478104077149;JUN:-0.483805221696;GATA4:-0.492887751943;SOX5:-0.496241439988;XBP1:-0.504778286018;FOSL2:-0.508394381209;SREBF1,2:-0.524072936615;ATF4:-0.527802814534;POU5F1:-0.52927021879;DMAP1_NCOR{1,2}_SMARC:-0.553174837068;SPIB:-0.558512726396;ZNF238:-0.573233829216;BACH2:-0.581313954652;PAX2:-0.586374558079;SPI1:-0.595403035839;MTE{core}:-0.596425779137;PDX1:-0.603785184515;HMGA1,2:-0.612387208211;SOX2:-0.627630810085;FOXP3:-0.642995868436;NFE2L2:-0.681968439886;GCM1,2:-0.686427172536;MYOD1:-0.724975041596;SMAD1..7,9:-0.725056481031;AR:-0.727315479819;MYFfamily:-0.734611546823;MTF1:-0.738268381212;RUNX1..3:-0.740423694822;NR5A1,2:-0.748842022532;FOX{F1,F2,J1}:-0.754215268547;LMO2:-0.75541398337;TAL1_TCF{3,4,12}:-0.755977589668;PAX6:-0.759061500612;HAND1,2:-0.771210650195;FOS_FOS{B,L1}_JUN{B,D}:-0.800782846215;NHLH1,2:-0.802484521404;NFE2:-0.814005480739;BPTF:-0.827178633664;FOXO1,3,4:-0.841221111479;CEBPA,B_DDIT3:-0.842943104124;ETS1,2:-0.922553321207;HLF:-0.944924594739;TLX2:-0.965842974219;NFIL3:-1.07468212878;STAT2,4,6:-1.26808520581;IRF7:-1.41740840403;HSF1,2:-1.48411554983;MAFB:-1.51851250496;NR6A1:-1.59598187738;NFATC1..3:-1.62083067125;IRF1,2:-1.68169693544;GZF1:-1.91159945558;NFE2L1:-1.92861066927;HES1:-2.04292694059;HIF1A:-2.4885139186 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10798-110I6;search_select_hide=table117:FF:10798-110I6 | |||
}} | }} | ||
Latest revision as of 15:05, 3 June 2020
| Name: | teratocarcinoma cell line:NCR-G1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11884 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11884
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11884
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.149 |
| 10 | 10 | 0.239 |
| 100 | 100 | 0.359 |
| 101 | 101 | 0.797 |
| 102 | 102 | 0.424 |
| 103 | 103 | 0.0245 |
| 104 | 104 | 0.422 |
| 105 | 105 | 0.273 |
| 106 | 106 | 0.16 |
| 107 | 107 | 0.952 |
| 108 | 108 | 0.969 |
| 109 | 109 | 0.0473 |
| 11 | 11 | 0.0893 |
| 110 | 110 | 0.963 |
| 111 | 111 | 0.00149 |
| 112 | 112 | 0.0516 |
| 113 | 113 | 0.0717 |
| 114 | 114 | 0.0281 |
| 115 | 115 | 0.41 |
| 116 | 116 | 0.888 |
| 117 | 117 | 0.752 |
| 118 | 118 | 0.475 |
| 119 | 119 | 0.215 |
| 12 | 12 | 0.929 |
| 120 | 120 | 0.765 |
| 121 | 121 | 0.681 |
| 122 | 122 | 0.887 |
| 123 | 123 | 0.966 |
| 124 | 124 | 0.547 |
| 125 | 125 | 0.995 |
| 126 | 126 | 0.59 |
| 127 | 127 | 0.0503 |
| 128 | 128 | 0.744 |
| 129 | 129 | 0.296 |
| 13 | 13 | 0.472 |
| 130 | 130 | 0.0217 |
| 131 | 131 | 0.486 |
| 132 | 132 | 0.656 |
| 133 | 133 | 0.172 |
| 134 | 134 | 0.764 |
| 135 | 135 | 5.69805e-5 |
| 136 | 136 | 0.209 |
| 137 | 137 | 0.059 |
| 138 | 138 | 0.178 |
| 139 | 139 | 0.00534 |
| 14 | 14 | 0.947 |
| 140 | 140 | 0.108 |
| 141 | 141 | 0.177 |
| 142 | 142 | 0.435 |
| 143 | 143 | 0.00606 |
| 144 | 144 | 0.892 |
| 145 | 145 | 0.748 |
| 146 | 146 | 0.495 |
| 147 | 147 | 0.802 |
| 148 | 148 | 0.0113 |
| 149 | 149 | 0.0327 |
| 15 | 15 | 0.164 |
| 150 | 150 | 0.824 |
| 151 | 151 | 0.0354 |
| 152 | 152 | 0.663 |
| 153 | 153 | 0.485 |
| 154 | 154 | 0.807 |
| 155 | 155 | 0.596 |
| 156 | 156 | 0.685 |
| 157 | 157 | 0.915 |
| 158 | 158 | 0.168 |
| 159 | 159 | 0.417 |
| 16 | 16 | 0.375 |
| 160 | 160 | 0.481 |
| 161 | 161 | 0.397 |
| 162 | 162 | 0.754 |
| 163 | 163 | 0.289 |
| 164 | 164 | 0.375 |
| 165 | 165 | 0.219 |
| 166 | 166 | 0.613 |
| 167 | 167 | 0.202 |
| 168 | 168 | 0.027 |
| 169 | 169 | 0.0279 |
| 17 | 17 | 0.219 |
| 18 | 18 | 0.141 |
| 19 | 19 | 0.545 |
| 2 | 2 | 0.342 |
| 20 | 20 | 0.491 |
| 21 | 21 | 0.932 |
| 22 | 22 | 0.362 |
| 23 | 23 | 0.00959 |
| 24 | 24 | 0.659 |
| 25 | 25 | 0.119 |
| 26 | 26 | 0.959 |
| 27 | 27 | 0.0928 |
| 28 | 28 | 0.575 |
| 29 | 29 | 0.393 |
| 3 | 3 | 0.243 |
| 30 | 30 | 0.854 |
| 31 | 31 | 0.672 |
| 32 | 32 | 0.13 |
| 33 | 33 | 0.94 |
| 34 | 34 | 0.643 |
| 35 | 35 | 0.341 |
| 36 | 36 | 0.962 |
| 37 | 37 | 0.916 |
| 38 | 38 | 0.535 |
| 39 | 39 | 0.551 |
| 4 | 4 | 0.971 |
| 40 | 40 | 0.259 |
| 41 | 41 | 0.162 |
| 42 | 42 | 0.547 |
| 43 | 43 | 0.163 |
| 44 | 44 | 0.855 |
| 45 | 45 | 0.698 |
| 46 | 46 | 0.206 |
| 47 | 47 | 0.763 |
| 48 | 48 | 0.72 |
| 49 | 49 | 0.232 |
| 5 | 5 | 0.13 |
| 50 | 50 | 0.766 |
| 51 | 51 | 0.529 |
| 52 | 52 | 0.4 |
| 53 | 53 | 0.987 |
| 54 | 54 | 0.489 |
| 55 | 55 | 0.0145 |
| 56 | 56 | 0.829 |
| 57 | 57 | 0.978 |
| 58 | 58 | 0.0907 |
| 59 | 59 | 0.134 |
| 6 | 6 | 0.96 |
| 60 | 60 | 0.065 |
| 61 | 61 | 0.533 |
| 62 | 62 | 0.0471 |
| 63 | 63 | 0.163 |
| 64 | 64 | 0.228 |
| 65 | 65 | 0.119 |
| 66 | 66 | 0.367 |
| 67 | 67 | 0.484 |
| 68 | 68 | 0.558 |
| 69 | 69 | 0.621 |
| 7 | 7 | 0.48 |
| 70 | 70 | 0.00264 |
| 71 | 71 | 0.158 |
| 72 | 72 | 0.165 |
| 73 | 73 | 0.43 |
| 74 | 74 | 0.183 |
| 75 | 75 | 0.76 |
| 76 | 76 | 0.958 |
| 77 | 77 | 0.585 |
| 78 | 78 | 0.746 |
| 79 | 79 | 0.341 |
| 8 | 8 | 0.242 |
| 80 | 80 | 0.0663 |
| 81 | 81 | 0.164 |
| 82 | 82 | 0.0614 |
| 83 | 83 | 0.0881 |
| 84 | 84 | 0.985 |
| 85 | 85 | 0.00348 |
| 86 | 86 | 0.166 |
| 87 | 87 | 0.178 |
| 88 | 88 | 0.762 |
| 89 | 89 | 0.00537 |
| 9 | 9 | 0.275 |
| 90 | 90 | 0.272 |
| 91 | 91 | 0.145 |
| 92 | 92 | 0.0444 |
| 93 | 93 | 0.664 |
| 94 | 94 | 0.122 |
| 95 | 95 | 0.977 |
| 96 | 96 | 0.102 |
| 97 | 97 | 0.864 |
| 98 | 98 | 0.29 |
| 99 | 99 | 0.698 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11884
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100306 teratocarcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100306 (teratocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
