FF:11438-118H7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005893 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005893 | ||
|accession_numbers=CAGE;DRX008503;DRR009375;DRZ000800;DRZ002185;DRZ012150;DRZ013535 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037190;DRR041556;DRZ007198 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000175 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11438-118H7 | |id=FF:11438-118H7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000175 | ||
|is_obsolete= | |||
|library_id=CNhs12048 | |||
|library_id_phase_based=2:CNhs12048 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11438 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.TAGCTT.11438 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11438 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.TAGCTT.11438 | |||
|name=Smooth Muscle Cells - Subclavian Artery, donor3 | |name=Smooth Muscle Cells - Subclavian Artery, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12048,LSID838,release011,COMPLETED | |profile_hcage=CNhs12048,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.113123513902641,0,0.361214111916685,0.517955414658317,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1201185336406,0,0,0,0,0,0.26665925234154,0,0,0.306976364262429,0,0,0,0,0,0,0,0,0,0,0.157895037844406,0,0.444790373589415,0.273441543989027,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.060551410631309,0,0,0,0,0,0,0,0,0.157895037844406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0208503693632545,0,0,0,-0.0584468268118252,0.09355477770584,0,0.609504360803418,0.078947518922203,0,-0.0980353512377064,0.437985430582217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202540402020388,0,0,0,0.268756228711789,0.349490450093113,0,0,0.0207902263814252,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA3010-R10a | |rna_catalog_number=CA3010-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118H7 | |rna_tube_id=118H7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.TAGCTT | |||
|sample_age=59 | |sample_age=59 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.41778250266707e-225!GO:0005737;cytoplasm;4.158536781155e-195!GO:0044444;cytoplasmic part;6.70217066152822e-145!GO:0043226;organelle;1.02834546148579e-139!GO:0043229;intracellular organelle;2.65432043172324e-139!GO:0043231;intracellular membrane-bound organelle;1.5076797305001e-134!GO:0043227;membrane-bound organelle;2.01663567345249e-134!GO:0044422;organelle part;3.72106332483307e-109!GO:0044446;intracellular organelle part;1.12891750572435e-107!GO:0005515;protein binding;2.92549075452247e-79!GO:0032991;macromolecular complex;1.54562375837366e-75!GO:0030529;ribonucleoprotein complex;6.42429065370354e-69!GO:0005739;mitochondrion;6.80497085942674e-63!GO:0044238;primary metabolic process;9.40346018743918e-61!GO:0044237;cellular metabolic process;8.38029846254838e-60!GO:0031090;organelle membrane;2.14818101770312e-57!GO:0043170;macromolecule metabolic process;5.81537615284791e-53!GO:0043233;organelle lumen;8.4925680820684e-53!GO:0031974;membrane-enclosed lumen;8.4925680820684e-53!GO:0019538;protein metabolic process;8.4925680820684e-53!GO:0003723;RNA binding;4.17209082807571e-51!GO:0006412;translation;3.92426691057498e-48!GO:0005840;ribosome;4.57754059983403e-48!GO:0044260;cellular macromolecule metabolic process;6.93944482952373e-47!GO:0044267;cellular protein metabolic process;4.38132134133746e-46!GO:0044429;mitochondrial part;1.38538205068838e-43!GO:0044428;nuclear part;2.4111120994217e-43!GO:0003735;structural constituent of ribosome;4.94184095624094e-43!GO:0009058;biosynthetic process;6.43962850398974e-43!GO:0015031;protein transport;6.67336121025394e-43!GO:0005829;cytosol;7.2790515760342e-42!GO:0033036;macromolecule localization;1.43945712353658e-40!GO:0045184;establishment of protein localization;3.7782471458998e-40!GO:0009059;macromolecule biosynthetic process;3.78807877033521e-40!GO:0044249;cellular biosynthetic process;1.72492619024779e-39!GO:0008104;protein localization;1.30394063073973e-38!GO:0043234;protein complex;7.02734534674732e-38!GO:0033279;ribosomal subunit;1.05405940269554e-37!GO:0031967;organelle envelope;1.49865267572048e-37!GO:0031975;envelope;3.52990308929128e-37!GO:0016043;cellular component organization and biogenesis;3.52990308929128e-37!GO:0046907;intracellular transport;3.32563825128226e-32!GO:0005634;nucleus;4.92919681124354e-32!GO:0005740;mitochondrial envelope;2.0331039296372e-30!GO:0006396;RNA processing;2.00632669238341e-29!GO:0031966;mitochondrial membrane;7.21326676032865e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.81887870345118e-29!GO:0006886;intracellular protein transport;2.65397021630268e-28!GO:0031981;nuclear lumen;3.03289651887666e-27!GO:0005783;endoplasmic reticulum;3.63865582408941e-27!GO:0019866;organelle inner membrane;3.55469399383394e-26!GO:0005743;mitochondrial inner membrane;3.81949090258177e-25!GO:0012505;endomembrane system;4.83460738930943e-24!GO:0044445;cytosolic part;5.01088285950577e-24!GO:0065003;macromolecular complex assembly;1.22498393834299e-23!GO:0016071;mRNA metabolic process;1.60188599398321e-23!GO:0006119;oxidative phosphorylation;5.13903753295705e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.7540533859244e-22!GO:0008380;RNA splicing;5.42812566445882e-22!GO:0022607;cellular component assembly;4.94258360658773e-21!GO:0051649;establishment of cellular localization;9.22316861104311e-21!GO:0043283;biopolymer metabolic process;9.98371350516353e-21!GO:0044432;endoplasmic reticulum part;1.25816054754579e-20!GO:0051641;cellular localization;1.43421173876545e-20!GO:0005794;Golgi apparatus;1.55187164793113e-20!GO:0006397;mRNA processing;4.60282684774344e-20!GO:0044455;mitochondrial membrane part;6.89656236342224e-20!GO:0015934;large ribosomal subunit;7.94653633635367e-20!GO:0010467;gene expression;9.86907397602866e-20!GO:0006457;protein folding;1.28091470650787e-19!GO:0015935;small ribosomal subunit;7.6380446109512e-19!GO:0043228;non-membrane-bound organelle;1.4552650702767e-18!GO:0043232;intracellular non-membrane-bound organelle;1.4552650702767e-18!GO:0006996;organelle organization and biogenesis;1.47019861480004e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.79251996063057e-18!GO:0016462;pyrophosphatase activity;3.88893631353602e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;5.93548282223749e-18!GO:0017111;nucleoside-triphosphatase activity;7.71824964677567e-18!GO:0005746;mitochondrial respiratory chain;1.71192584704e-17!GO:0048770;pigment granule;2.02485142904531e-17!GO:0042470;melanosome;2.02485142904531e-17!GO:0031980;mitochondrial lumen;1.02185095534465e-16!GO:0005759;mitochondrial matrix;1.02185095534465e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.02221853321128e-16!GO:0000166;nucleotide binding;9.70583434558537e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.08658760689075e-15!GO:0005654;nucleoplasm;1.09805085103939e-15!GO:0006512;ubiquitin cycle;1.98917180122964e-15!GO:0016192;vesicle-mediated transport;2.36473541932265e-15!GO:0006605;protein targeting;2.37945184581317e-15!GO:0016874;ligase activity;2.61225491141895e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.88823422046198e-15!GO:0005681;spliceosome;3.02328189774354e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.03929346604211e-15!GO:0003954;NADH dehydrogenase activity;3.03929346604211e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.03929346604211e-15!GO:0048193;Golgi vesicle transport;4.35078591281957e-15!GO:0051186;cofactor metabolic process;5.24152470343653e-15!GO:0044265;cellular macromolecule catabolic process;9.55006913799577e-15!GO:0005789;endoplasmic reticulum membrane;1.12334140531423e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.16914645909693e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.22160399622034e-14!GO:0022618;protein-RNA complex assembly;2.70412808781103e-14!GO:0008134;transcription factor binding;2.76258944035025e-14!GO:0043285;biopolymer catabolic process;2.97362667145366e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.03732539429825e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;3.66412294191478e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.66412294191478e-14!GO:0051082;unfolded protein binding;6.55135245456926e-14!GO:0019941;modification-dependent protein catabolic process;6.68997118315647e-14!GO:0043632;modification-dependent macromolecule catabolic process;6.68997118315647e-14!GO:0009057;macromolecule catabolic process;8.55356883486843e-14!GO:0044257;cellular protein catabolic process;8.80516953356838e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.63624987120338e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.72792343950017e-13!GO:0045271;respiratory chain complex I;1.72792343950017e-13!GO:0005747;mitochondrial respiratory chain complex I;1.72792343950017e-13!GO:0044451;nucleoplasm part;1.82983791130132e-13!GO:0009055;electron carrier activity;1.95645486794823e-13!GO:0012501;programmed cell death;1.98522554137868e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.56251123553711e-13!GO:0042773;ATP synthesis coupled electron transport;2.56251123553711e-13!GO:0044248;cellular catabolic process;3.15441182887851e-13!GO:0006915;apoptosis;4.08234750040887e-13!GO:0030163;protein catabolic process;5.75804525724364e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.14625531753466e-13!GO:0043412;biopolymer modification;6.88279764080235e-13!GO:0008135;translation factor activity, nucleic acid binding;9.29408380131095e-13!GO:0005730;nucleolus;1.06473549214672e-12!GO:0005761;mitochondrial ribosome;1.52741443273893e-12!GO:0000313;organellar ribosome;1.52741443273893e-12!GO:0005793;ER-Golgi intermediate compartment;3.31130283895575e-12!GO:0017076;purine nucleotide binding;4.16042195856245e-12!GO:0006464;protein modification process;4.25207861348505e-12!GO:0032553;ribonucleotide binding;5.16100621345209e-12!GO:0032555;purine ribonucleotide binding;5.16100621345209e-12!GO:0008219;cell death;5.92305441113208e-12!GO:0016265;death;5.92305441113208e-12!GO:0006732;coenzyme metabolic process;6.23105564446635e-12!GO:0048523;negative regulation of cellular process;1.69797773510166e-11!GO:0009259;ribonucleotide metabolic process;5.52907385948686e-11!GO:0016491;oxidoreductase activity;9.10657894579057e-11!GO:0006163;purine nucleotide metabolic process;1.31574929056953e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.52660508206893e-10!GO:0009150;purine ribonucleotide metabolic process;2.01083787308317e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.15511525563387e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.7969857994583e-10!GO:0048519;negative regulation of biological process;4.3873619522067e-10!GO:0006164;purine nucleotide biosynthetic process;5.41779742568586e-10!GO:0009260;ribonucleotide biosynthetic process;6.33350359435843e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.90012029421203e-10!GO:0043067;regulation of programmed cell death;8.85468184727226e-10!GO:0043687;post-translational protein modification;1.02827267390249e-09!GO:0003743;translation initiation factor activity;1.09477350146376e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.09626484979743e-09!GO:0030120;vesicle coat;1.1055469610529e-09!GO:0030662;coated vesicle membrane;1.1055469610529e-09!GO:0042981;regulation of apoptosis;1.10687335541808e-09!GO:0008639;small protein conjugating enzyme activity;1.15261932333678e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.24302877342741e-09!GO:0006413;translational initiation;1.30638358713554e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.5429463650168e-09!GO:0004842;ubiquitin-protein ligase activity;1.99859037793166e-09!GO:0003712;transcription cofactor activity;2.07492072278748e-09!GO:0044431;Golgi apparatus part;2.1695891102107e-09!GO:0019787;small conjugating protein ligase activity;2.71141190914285e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.90891640123499e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.90891640123499e-09!GO:0043069;negative regulation of programmed cell death;3.19028904558121e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.41834566952214e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.41834566952214e-09!GO:0003924;GTPase activity;3.42202746169624e-09!GO:0009141;nucleoside triphosphate metabolic process;3.57958793135706e-09!GO:0006913;nucleocytoplasmic transport;4.08217624712792e-09!GO:0005524;ATP binding;4.65571700091395e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.8329472308859e-09!GO:0006916;anti-apoptosis;5.01001277282969e-09!GO:0015986;ATP synthesis coupled proton transport;5.23051841819358e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.23051841819358e-09!GO:0043066;negative regulation of apoptosis;6.0057136035609e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.48476325017336e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.48476325017336e-09!GO:0005768;endosome;7.77530876317779e-09!GO:0008565;protein transporter activity;8.07472919237611e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.07472919237611e-09!GO:0000375;RNA splicing, via transesterification reactions;8.07472919237611e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.07472919237611e-09!GO:0006446;regulation of translational initiation;8.78458124475825e-09!GO:0051169;nuclear transport;8.80807508678534e-09!GO:0032559;adenyl ribonucleotide binding;9.58146694787358e-09!GO:0030554;adenyl nucleotide binding;9.87798591698567e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.02064020629109e-08!GO:0042254;ribosome biogenesis and assembly;1.09816021429053e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.23112357304657e-08!GO:0005635;nuclear envelope;1.66972475338215e-08!GO:0017038;protein import;1.71765674952002e-08!GO:0006259;DNA metabolic process;2.27539537492317e-08!GO:0006461;protein complex assembly;2.3711354985175e-08!GO:0031965;nuclear membrane;2.43801597295049e-08!GO:0048475;coated membrane;2.48679764145143e-08!GO:0030117;membrane coat;2.48679764145143e-08!GO:0016881;acid-amino acid ligase activity;2.71353137541277e-08!GO:0009056;catabolic process;3.02966170331313e-08!GO:0051246;regulation of protein metabolic process;3.10438879506884e-08!GO:0019829;cation-transporting ATPase activity;3.14958839014038e-08!GO:0005788;endoplasmic reticulum lumen;3.4509824466562e-08!GO:0051188;cofactor biosynthetic process;4.8663642751933e-08!GO:0046034;ATP metabolic process;5.42861717975268e-08!GO:0009060;aerobic respiration;6.15795952000145e-08!GO:0016887;ATPase activity;6.43702242841954e-08!GO:0009117;nucleotide metabolic process;6.65462544285437e-08!GO:0031988;membrane-bound vesicle;8.36525825783677e-08!GO:0044453;nuclear membrane part;8.55718370061677e-08!GO:0006091;generation of precursor metabolites and energy;8.76537718958821e-08!GO:0006754;ATP biosynthetic process;8.80409402835586e-08!GO:0006753;nucleoside phosphate metabolic process;8.80409402835586e-08!GO:0042623;ATPase activity, coupled;8.80409402835586e-08!GO:0016023;cytoplasmic membrane-bound vesicle;8.85747553825952e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.81274292660596e-07!GO:0005773;vacuole;2.24965634039437e-07!GO:0016604;nuclear body;2.46362883269764e-07!GO:0048522;positive regulation of cellular process;3.08491028762424e-07!GO:0045333;cellular respiration;3.26319829345202e-07!GO:0005798;Golgi-associated vesicle;3.85698579181709e-07!GO:0000139;Golgi membrane;4.12338656176839e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.23731589774845e-07!GO:0007049;cell cycle;5.52365507363932e-07!GO:0031982;vesicle;6.43322591893926e-07!GO:0006399;tRNA metabolic process;7.80519222272704e-07!GO:0031410;cytoplasmic vesicle;8.51503379104492e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.24908662206454e-07!GO:0044440;endosomal part;1.70820045146514e-06!GO:0010008;endosome membrane;1.70820045146514e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.9429500172918e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.9429500172918e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.9429500172918e-06!GO:0009108;coenzyme biosynthetic process;2.10428339513874e-06!GO:0006099;tricarboxylic acid cycle;2.48938956229194e-06!GO:0046356;acetyl-CoA catabolic process;2.48938956229194e-06!GO:0007243;protein kinase cascade;2.50383553587678e-06!GO:0001558;regulation of cell growth;2.74804772119703e-06!GO:0051187;cofactor catabolic process;2.76899589224052e-06!GO:0045259;proton-transporting ATP synthase complex;2.92897196362463e-06!GO:0000323;lytic vacuole;2.92897196362463e-06!GO:0005764;lysosome;2.92897196362463e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.95381170945614e-06!GO:0008361;regulation of cell size;3.47387720648897e-06!GO:0004298;threonine endopeptidase activity;3.58993772051593e-06!GO:0016049;cell growth;3.61148227563024e-06!GO:0043038;amino acid activation;3.95004155963278e-06!GO:0006418;tRNA aminoacylation for protein translation;3.95004155963278e-06!GO:0043039;tRNA aminoacylation;3.95004155963278e-06!GO:0016787;hydrolase activity;4.23366168594363e-06!GO:0005643;nuclear pore;4.38013917872951e-06!GO:0003714;transcription corepressor activity;4.39634662343488e-06!GO:0005770;late endosome;4.83300124011353e-06!GO:0065002;intracellular protein transport across a membrane;5.12076565363738e-06!GO:0031252;leading edge;5.49970403184834e-06!GO:0008026;ATP-dependent helicase activity;5.55595731587612e-06!GO:0007005;mitochondrion organization and biogenesis;5.8447186722578e-06!GO:0009109;coenzyme catabolic process;6.67316389308975e-06!GO:0051789;response to protein stimulus;6.67427686922922e-06!GO:0006986;response to unfolded protein;6.67427686922922e-06!GO:0031968;organelle outer membrane;8.20736325173222e-06!GO:0006084;acetyl-CoA metabolic process;8.71396427906099e-06!GO:0005525;GTP binding;8.93326486960509e-06!GO:0006752;group transfer coenzyme metabolic process;9.3920461860391e-06!GO:0003676;nucleic acid binding;9.51623436666748e-06!GO:0051170;nuclear import;1.04896577777372e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.05014069009525e-05!GO:0019867;outer membrane;1.12554403826331e-05!GO:0016740;transferase activity;1.15494012381486e-05!GO:0006606;protein import into nucleus;1.30787892418713e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.3828165710864e-05!GO:0006793;phosphorus metabolic process;1.70873595652993e-05!GO:0006796;phosphate metabolic process;1.70873595652993e-05!GO:0008654;phospholipid biosynthetic process;1.77188755559269e-05!GO:0016310;phosphorylation;1.94745275049911e-05!GO:0004386;helicase activity;1.9905876072222e-05!GO:0030133;transport vesicle;2.28933315172301e-05!GO:0045454;cell redox homeostasis;2.32166202033247e-05!GO:0006364;rRNA processing;2.40063308476306e-05!GO:0044262;cellular carbohydrate metabolic process;2.43000426126138e-05!GO:0005048;signal sequence binding;2.80294089629701e-05!GO:0005905;coated pit;2.87663491586781e-05!GO:0016607;nuclear speck;2.88072438898588e-05!GO:0005762;mitochondrial large ribosomal subunit;3.04578787047911e-05!GO:0000315;organellar large ribosomal subunit;3.04578787047911e-05!GO:0050794;regulation of cellular process;3.05194398484657e-05!GO:0016072;rRNA metabolic process;3.06300462451579e-05!GO:0046930;pore complex;3.26299306892074e-05!GO:0016853;isomerase activity;3.67473789780549e-05!GO:0005741;mitochondrial outer membrane;3.89370362244232e-05!GO:0006613;cotranslational protein targeting to membrane;4.00040539354579e-05!GO:0051726;regulation of cell cycle;4.00040539354579e-05!GO:0016567;protein ubiquitination;4.40728800975118e-05!GO:0006366;transcription from RNA polymerase II promoter;4.63660714647033e-05!GO:0032446;protein modification by small protein conjugation;4.786151894442e-05!GO:0032561;guanyl ribonucleotide binding;4.83777649446392e-05!GO:0019001;guanyl nucleotide binding;4.83777649446392e-05!GO:0016779;nucleotidyltransferase activity;5.34489887498898e-05!GO:0016564;transcription repressor activity;5.3906515341655e-05!GO:0000074;regulation of progression through cell cycle;5.42228325285396e-05!GO:0009967;positive regulation of signal transduction;5.97631887037977e-05!GO:0030867;rough endoplasmic reticulum membrane;6.09038436145632e-05!GO:0000151;ubiquitin ligase complex;6.10009045775085e-05!GO:0019843;rRNA binding;6.3225264319554e-05!GO:0022402;cell cycle process;6.44507594978289e-05!GO:0048518;positive regulation of biological process;7.57668117487846e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.63831816330697e-05!GO:0000245;spliceosome assembly;9.39011237328615e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000100303374878438!GO:0040008;regulation of growth;0.000100445420551667!GO:0009165;nucleotide biosynthetic process;0.000109851695104038!GO:0030029;actin filament-based process;0.000109867751447682!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000111546835643075!GO:0015399;primary active transmembrane transporter activity;0.000111546835643075!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000131079353058008!GO:0016070;RNA metabolic process;0.000132578427921739!GO:0005667;transcription factor complex;0.000157471568171226!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000173084204573115!GO:0006612;protein targeting to membrane;0.000174300587064271!GO:0015980;energy derivation by oxidation of organic compounds;0.000175231537156361!GO:0043623;cellular protein complex assembly;0.000199151129189896!GO:0030659;cytoplasmic vesicle membrane;0.00021570777105848!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00021570777105848!GO:0031324;negative regulation of cellular metabolic process;0.000220607222435017!GO:0030663;COPI coated vesicle membrane;0.000222437146151331!GO:0030126;COPI vesicle coat;0.000222437146151331!GO:0006414;translational elongation;0.000254362411833281!GO:0003713;transcription coactivator activity;0.000286566135945878!GO:0003724;RNA helicase activity;0.000304786506672615!GO:0030658;transport vesicle membrane;0.000316305450240623!GO:0005769;early endosome;0.000321862737500004!GO:0006118;electron transport;0.000327617789808843!GO:0046474;glycerophospholipid biosynthetic process;0.000360653799903527!GO:0016859;cis-trans isomerase activity;0.000383138599447747!GO:0065009;regulation of a molecular function;0.000397409131733177!GO:0043284;biopolymer biosynthetic process;0.00040706051955926!GO:0006974;response to DNA damage stimulus;0.000417201415182402!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000449833173406453!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000452536789475055!GO:0005885;Arp2/3 protein complex;0.000461929419969433!GO:0016044;membrane organization and biogenesis;0.00049856415435781!GO:0030137;COPI-coated vesicle;0.000508447888612746!GO:0044433;cytoplasmic vesicle part;0.000516418022878586!GO:0050789;regulation of biological process;0.000532913604250865!GO:0006323;DNA packaging;0.000541745413901038!GO:0030176;integral to endoplasmic reticulum membrane;0.000552114044329388!GO:0050657;nucleic acid transport;0.000556003932279632!GO:0051236;establishment of RNA localization;0.000556003932279632!GO:0050658;RNA transport;0.000556003932279632!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000585604434135302!GO:0045045;secretory pathway;0.000592441775290469!GO:0006403;RNA localization;0.000595126740999292!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000595847349120692!GO:0016563;transcription activator activity;0.000614074931852858!GO:0065004;protein-DNA complex assembly;0.000633020160306166!GO:0045786;negative regulation of progression through cell cycle;0.000714562511393866!GO:0043492;ATPase activity, coupled to movement of substances;0.000800873165719276!GO:0004576;oligosaccharyl transferase activity;0.000816420357104517!GO:0008092;cytoskeletal protein binding;0.000834012354479048!GO:0009892;negative regulation of metabolic process;0.000844605654450725!GO:0000278;mitotic cell cycle;0.000844745209065881!GO:0042802;identical protein binding;0.000851828603932892!GO:0048468;cell development;0.000859174657729088!GO:0019899;enzyme binding;0.000944108902862715!GO:0003697;single-stranded DNA binding;0.000953988151638709!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000957444815556559!GO:0051920;peroxiredoxin activity;0.00105269946332413!GO:0008250;oligosaccharyl transferase complex;0.00105446215870883!GO:0012506;vesicle membrane;0.0010625220184036!GO:0000314;organellar small ribosomal subunit;0.0010625220184036!GO:0005763;mitochondrial small ribosomal subunit;0.0010625220184036!GO:0030660;Golgi-associated vesicle membrane;0.00111356805672093!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0012314025465427!GO:0005791;rough endoplasmic reticulum;0.00125499610366967!GO:0051427;hormone receptor binding;0.00128349905904524!GO:0008047;enzyme activator activity;0.00134945764756599!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00146362718796272!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00149033190160357!GO:0048471;perinuclear region of cytoplasm;0.00155689497692339!GO:0007264;small GTPase mediated signal transduction;0.00160415667744132!GO:0043681;protein import into mitochondrion;0.00163673371470887!GO:0030132;clathrin coat of coated pit;0.00171996638626283!GO:0030118;clathrin coat;0.00172321672964783!GO:0043021;ribonucleoprotein binding;0.00188901319859223!GO:0008632;apoptotic program;0.00190500520454956!GO:0022890;inorganic cation transmembrane transporter activity;0.00206871476445235!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00217063666104315!GO:0015992;proton transport;0.00222034773809577!GO:0046489;phosphoinositide biosynthetic process;0.00229123675666915!GO:0030134;ER to Golgi transport vesicle;0.00229992358647724!GO:0006891;intra-Golgi vesicle-mediated transport;0.00237283619244303!GO:0035257;nuclear hormone receptor binding;0.00237497769489468!GO:0018196;peptidyl-asparagine modification;0.00237497769489468!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00237497769489468!GO:0045792;negative regulation of cell size;0.0025611090075315!GO:0030308;negative regulation of cell growth;0.00260201355808277!GO:0006626;protein targeting to mitochondrion;0.00271764090360257!GO:0006818;hydrogen transport;0.00273249734351256!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00273321561973737!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00273321561973737!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00273321561973737!GO:0046467;membrane lipid biosynthetic process;0.00281299565267537!GO:0032940;secretion by cell;0.00288780904944882!GO:0006509;membrane protein ectodomain proteolysis;0.00309480213690101!GO:0033619;membrane protein proteolysis;0.00309480213690101!GO:0030127;COPII vesicle coat;0.00318745511442465!GO:0012507;ER to Golgi transport vesicle membrane;0.00318745511442465!GO:0030125;clathrin vesicle coat;0.00335973621134324!GO:0030665;clathrin coated vesicle membrane;0.00335973621134324!GO:0043566;structure-specific DNA binding;0.00343486472903763!GO:0031072;heat shock protein binding;0.0034620004007357!GO:0051540;metal cluster binding;0.00366224529873573!GO:0051536;iron-sulfur cluster binding;0.00366224529873573!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0037131867706288!GO:0004177;aminopeptidase activity;0.00374116450741762!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00379853174602036!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00382760098021028!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00382760098021028!GO:0048487;beta-tubulin binding;0.00390035653644575!GO:0009719;response to endogenous stimulus;0.00391070001754716!GO:0006281;DNA repair;0.00392006435004221!GO:0006950;response to stress;0.00394179574066633!GO:0016197;endosome transport;0.00397904866143406!GO:0003899;DNA-directed RNA polymerase activity;0.00400308656003057!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00426715389995055!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00428887617231544!GO:0008139;nuclear localization sequence binding;0.00434314782844663!GO:0051028;mRNA transport;0.0044070947741754!GO:0007006;mitochondrial membrane organization and biogenesis;0.00445700406561187!GO:0006333;chromatin assembly or disassembly;0.00447087787236288!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00448373164172513!GO:0008243;plasminogen activator activity;0.00458140153953077!GO:0051168;nuclear export;0.00465546192666607!GO:0030027;lamellipodium;0.00489848209599842!GO:0017166;vinculin binding;0.00504604998644965!GO:0007010;cytoskeleton organization and biogenesis;0.00506812356534348!GO:0016568;chromatin modification;0.00513240620484117!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00518586614031032!GO:0008186;RNA-dependent ATPase activity;0.00529366721710156!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00530556353258017!GO:0051276;chromosome organization and biogenesis;0.00531484410835575!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00542949115458985!GO:0015002;heme-copper terminal oxidase activity;0.00542949115458985!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00542949115458985!GO:0004129;cytochrome-c oxidase activity;0.00542949115458985!GO:0045941;positive regulation of transcription;0.00543005414100347!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00543005414100347!GO:0007033;vacuole organization and biogenesis;0.00543005414100347!GO:0005774;vacuolar membrane;0.00574534836881184!GO:0043433;negative regulation of transcription factor activity;0.00601228404868174!GO:0000059;protein import into nucleus, docking;0.00602519087855565!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00616445026599698!GO:0006417;regulation of translation;0.00631882576617205!GO:0006839;mitochondrial transport;0.0064522481814021!GO:0016126;sterol biosynthetic process;0.00646899717965856!GO:0008610;lipid biosynthetic process;0.00650408382195136!GO:0006082;organic acid metabolic process;0.00651846729597337!GO:0007040;lysosome organization and biogenesis;0.0065556886778683!GO:0006979;response to oxidative stress;0.00671311142727351!GO:0048500;signal recognition particle;0.00676453631998726!GO:0045893;positive regulation of transcription, DNA-dependent;0.00687365787141964!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00697589427793793!GO:0019752;carboxylic acid metabolic process;0.0071739913239386!GO:0006650;glycerophospholipid metabolic process;0.00728857272852368!GO:0046483;heterocycle metabolic process;0.00747047274598769!GO:0006383;transcription from RNA polymerase III promoter;0.00753669840021413!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00754957999923293!GO:0046519;sphingoid metabolic process;0.0083902270511317!GO:0033673;negative regulation of kinase activity;0.00844155047634976!GO:0006469;negative regulation of protein kinase activity;0.00844155047634976!GO:0031902;late endosome membrane;0.00853456921856952!GO:0001666;response to hypoxia;0.00870294343619842!GO:0006334;nucleosome assembly;0.00870737073008606!GO:0030119;AP-type membrane coat adaptor complex;0.00893582043641665!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00902596994079275!GO:0003746;translation elongation factor activity;0.00906587896917125!GO:0006595;polyamine metabolic process;0.00910745016993438!GO:0009966;regulation of signal transduction;0.00922909060334485!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00945807142588135!GO:0051287;NAD binding;0.00990347850718399!GO:0045926;negative regulation of growth;0.00992985760578042!GO:0051059;NF-kappaB binding;0.0100189464841756!GO:0051252;regulation of RNA metabolic process;0.0102368382049522!GO:0030041;actin filament polymerization;0.0104759142128389!GO:0007034;vacuolar transport;0.0105375756171744!GO:0009615;response to virus;0.0105541552300289!GO:0006497;protein amino acid lipidation;0.0106906310382278!GO:0016481;negative regulation of transcription;0.0107928845902438!GO:0051348;negative regulation of transferase activity;0.0111868037341393!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0113719519795111!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0113719519795111!GO:0004004;ATP-dependent RNA helicase activity;0.0114578649488918!GO:0005520;insulin-like growth factor binding;0.0115761761418448!GO:0001726;ruffle;0.0116069384336566!GO:0008154;actin polymerization and/or depolymerization;0.0117210177951837!GO:0005096;GTPase activator activity;0.0118126348281243!GO:0030880;RNA polymerase complex;0.0118706560800292!GO:0005862;muscle thin filament tropomyosin;0.0126398612785971!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0127401732572176!GO:0045047;protein targeting to ER;0.0127401732572176!GO:0005869;dynactin complex;0.0128374939939493!GO:0043065;positive regulation of apoptosis;0.0129687568264988!GO:0050790;regulation of catalytic activity;0.0129687568264988!GO:0050662;coenzyme binding;0.0132004320912363!GO:0044437;vacuolar part;0.0134264838527985!GO:0006672;ceramide metabolic process;0.0136480512150772!GO:0006007;glucose catabolic process;0.0140327868263853!GO:0043068;positive regulation of programmed cell death;0.0141518631800482!GO:0006260;DNA replication;0.0146320678470033!GO:0030131;clathrin adaptor complex;0.0147810925884353!GO:0031301;integral to organelle membrane;0.0150288620476357!GO:0065007;biological regulation;0.0151645157156443!GO:0051087;chaperone binding;0.0155072192926471!GO:0031497;chromatin assembly;0.0157147021582362!GO:0030521;androgen receptor signaling pathway;0.0158831638353714!GO:0003729;mRNA binding;0.0162251014616941!GO:0005765;lysosomal membrane;0.0164560118513132!GO:0006892;post-Golgi vesicle-mediated transport;0.0165711023027413!GO:0005100;Rho GTPase activator activity;0.016596073523369!GO:0009889;regulation of biosynthetic process;0.0176938282898421!GO:0007242;intracellular signaling cascade;0.0181150300599137!GO:0008312;7S RNA binding;0.0181237178863053!GO:0043488;regulation of mRNA stability;0.0181237178863053!GO:0043487;regulation of RNA stability;0.0181237178863053!GO:0050811;GABA receptor binding;0.0181709615177938!GO:0007041;lysosomal transport;0.0181883647338216!GO:0008180;signalosome;0.0182054949251873!GO:0035258;steroid hormone receptor binding;0.0185821993788073!GO:0006778;porphyrin metabolic process;0.018610590420029!GO:0033013;tetrapyrrole metabolic process;0.018610590420029!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0194445744138539!GO:0015631;tubulin binding;0.0195349832717999!GO:0003711;transcription elongation regulator activity;0.0198061075900618!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0200057173282855!GO:0006740;NADPH regeneration;0.0207357252484788!GO:0006098;pentose-phosphate shunt;0.0207357252484788!GO:0031418;L-ascorbic acid binding;0.0213150066260435!GO:0005801;cis-Golgi network;0.0214409229024292!GO:0006693;prostaglandin metabolic process;0.0214409229024292!GO:0006692;prostanoid metabolic process;0.0214409229024292!GO:0008283;cell proliferation;0.0217068247478301!GO:0031529;ruffle organization and biogenesis;0.0218764358753493!GO:0009112;nucleobase metabolic process;0.0218904378164583!GO:0006458;'de novo' protein folding;0.0219172486004501!GO:0051084;'de novo' posttranslational protein folding;0.0219172486004501!GO:0005684;U2-dependent spliceosome;0.0226131461306577!GO:0035035;histone acetyltransferase binding;0.0227882780233438!GO:0042168;heme metabolic process;0.0234653040121045!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0238187762386469!GO:0000428;DNA-directed RNA polymerase complex;0.0238187762386469!GO:0006984;ER-nuclear signaling pathway;0.023865771485994!GO:0031326;regulation of cellular biosynthetic process;0.0240725070053483!GO:0006402;mRNA catabolic process;0.0242318833682682!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0242466912380086!GO:0005975;carbohydrate metabolic process;0.0242526974945573!GO:0043022;ribosome binding;0.0244133061144782!GO:0046870;cadmium ion binding;0.0244133061144782!GO:0007030;Golgi organization and biogenesis;0.02441483722551!GO:0051128;regulation of cellular component organization and biogenesis;0.0244161733070921!GO:0022407;regulation of cell-cell adhesion;0.0244161733070921!GO:0006506;GPI anchor biosynthetic process;0.0245124628919362!GO:0042158;lipoprotein biosynthetic process;0.0248418987759742!GO:0008538;proteasome activator activity;0.0264158945501768!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0264158945501768!GO:0006611;protein export from nucleus;0.0265901584959009!GO:0005099;Ras GTPase activator activity;0.0272656660853912!GO:0031901;early endosome membrane;0.027270156944098!GO:0048144;fibroblast proliferation;0.0273241644042882!GO:0048145;regulation of fibroblast proliferation;0.0273241644042882!GO:0006354;RNA elongation;0.0274851093200409!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0274851093200409!GO:0006897;endocytosis;0.0276178246588337!GO:0010324;membrane invagination;0.0276178246588337!GO:0019318;hexose metabolic process;0.0276608133729143!GO:0006695;cholesterol biosynthetic process;0.0277936462034722!GO:0022408;negative regulation of cell-cell adhesion;0.02779627836211!GO:0005832;chaperonin-containing T-complex;0.028356729227332!GO:0006401;RNA catabolic process;0.0284279782684952!GO:0031543;peptidyl-proline dioxygenase activity;0.0285584789035932!GO:0000030;mannosyltransferase activity;0.0289114828590941!GO:0008022;protein C-terminus binding;0.029069015076498!GO:0015630;microtubule cytoskeleton;0.0290859101193108!GO:0018193;peptidyl-amino acid modification;0.0291895689599698!GO:0005813;centrosome;0.0295275507778228!GO:0030145;manganese ion binding;0.0295275507778228!GO:0009116;nucleoside metabolic process;0.029668465344157!GO:0030833;regulation of actin filament polymerization;0.029668465344157!GO:0000785;chromatin;0.0297358516027447!GO:0003756;protein disulfide isomerase activity;0.0298610424901186!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0298610424901186!GO:0006505;GPI anchor metabolic process;0.0302828381713561!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0306539046306531!GO:0006807;nitrogen compound metabolic process;0.0307911088220799!GO:0005996;monosaccharide metabolic process;0.0311959991685771!GO:0000049;tRNA binding;0.0313098499914814!GO:0008637;apoptotic mitochondrial changes;0.033766967645449!GO:0007050;cell cycle arrest;0.0340988555857466!GO:0006607;NLS-bearing substrate import into nucleus;0.0352656793803443!GO:0046822;regulation of nucleocytoplasmic transport;0.0352656793803443!GO:0030032;lamellipodium biogenesis;0.0352656793803443!GO:0001953;negative regulation of cell-matrix adhesion;0.0353987138758989!GO:0051098;regulation of binding;0.0364484200122399!GO:0051539;4 iron, 4 sulfur cluster binding;0.0364484200122399!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0368490753252984!GO:0003779;actin binding;0.0371963789233643!GO:0030433;ER-associated protein catabolic process;0.0372115741233791!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0372115741233791!GO:0006643;membrane lipid metabolic process;0.0372666280654974!GO:0044438;microbody part;0.0372666280654974!GO:0044439;peroxisomal part;0.0372666280654974!GO:0030384;phosphoinositide metabolic process;0.0373178059095144!GO:0016272;prefoldin complex;0.0376516494694496!GO:0050681;androgen receptor binding;0.038081865251243!GO:0008033;tRNA processing;0.0386737994865725!GO:0006739;NADP metabolic process;0.0388909420929989!GO:0030140;trans-Golgi network transport vesicle;0.039710251032924!GO:0046979;TAP2 binding;0.0401023564701058!GO:0046977;TAP binding;0.0401023564701058!GO:0046978;TAP1 binding;0.0401023564701058!GO:0046426;negative regulation of JAK-STAT cascade;0.0402693523729844!GO:0000087;M phase of mitotic cell cycle;0.0404187491435681!GO:0009893;positive regulation of metabolic process;0.0417352672707696!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0420521998652819!GO:0031625;ubiquitin protein ligase binding;0.0436003688184001!GO:0051329;interphase of mitotic cell cycle;0.04378511316721!GO:0032507;maintenance of cellular protein localization;0.0441150706263323!GO:0022415;viral reproductive process;0.0441480895413485!GO:0008147;structural constituent of bone;0.0441542774171787!GO:0007067;mitosis;0.0449544084055032!GO:0019798;procollagen-proline dioxygenase activity;0.045318194808612!GO:0033239;negative regulation of amine metabolic process;0.045318194808612!GO:0045763;negative regulation of amino acid metabolic process;0.045318194808612!GO:0001933;negative regulation of protein amino acid phosphorylation;0.045318194808612!GO:0051090;regulation of transcription factor activity;0.045328459830192!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0455001250488466!GO:0048146;positive regulation of fibroblast proliferation;0.0456597513124308!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0457759985047391!GO:0030911;TPR domain binding;0.0459417230895867!GO:0031272;regulation of pseudopodium formation;0.0470386985953878!GO:0031269;pseudopodium formation;0.0470386985953878!GO:0031344;regulation of cell projection organization and biogenesis;0.0470386985953878!GO:0031268;pseudopodium organization and biogenesis;0.0470386985953878!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0470386985953878!GO:0031274;positive regulation of pseudopodium formation;0.0470386985953878!GO:0007021;tubulin folding;0.0472296036854236!GO:0007162;negative regulation of cell adhesion;0.0474436056032875!GO:0008234;cysteine-type peptidase activity;0.0474436056032875!GO:0000339;RNA cap binding;0.0476950624257656!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0478018821724147!GO:0051101;regulation of DNA binding;0.0480356106431053!GO:0006779;porphyrin biosynthetic process;0.0483170188590152!GO:0033014;tetrapyrrole biosynthetic process;0.0483170188590152!GO:0043086;negative regulation of catalytic activity;0.048510872918523!GO:0050178;phenylpyruvate tautomerase activity;0.0485703956195917!GO:0007160;cell-matrix adhesion;0.0494379872365303!GO:0044452;nucleolar part;0.0495372604326607!GO:0006066;alcohol metabolic process;0.0497484334484465 | |||
|sample_id=11438 | |sample_id=11438 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=subclavian artery | |sample_tissue=subclavian artery | ||
|top_motifs=PPARG:2.65132014225;HIF1A:2.13071926353;ALX4:1.94830397348;NFE2L1:1.67538721944;GCM1,2:1.62894206982;ZBTB6:1.6022380438;ZIC1..3:1.57372346407;EBF1:1.44844461946;HMX1:1.40949317241;NKX2-2,8:1.38502612087;HES1:1.38465378975;IKZF1:1.26674954518;GZF1:1.21877454913;GTF2A1,2:1.16854203778;EN1,2:1.16695380701;TFAP4:1.14230699681;UFEwm:1.13277938579;NFATC1..3:1.0754356196;ATF6:1.04774779788;TLX1..3_NFIC{dimer}:1.04062850361;HAND1,2:1.03646599703;GLI1..3:1.02020841282;ESRRA:1.0010942864;HSF1,2:0.986639239979;SMAD1..7,9:0.980380128306;TBP:0.953438659585;ONECUT1,2:0.939883955938;TEAD1:0.938471412513;NKX3-1:0.932351943946;ZNF238:0.923929551836;RXR{A,B,G}:0.836530727124;SRF:0.82389666535;FOXL1:0.819986631166;TAL1_TCF{3,4,12}:0.747882370811;NANOG{mouse}:0.724697825888;XBP1:0.718508218962;TP53:0.716710896283;POU3F1..4:0.711932424763;NFIX:0.701046914753;FOX{I1,J2}:0.694838796386;HOXA9_MEIS1:0.668247728553;MYBL2:0.661666002984;TFAP2{A,C}:0.65340401184;TFCP2:0.631035190825;PAX5:0.626653221348;ZNF148:0.595571326868;TBX4,5:0.549205920547;KLF4:0.548620473576;IRF7:0.544924435442;MTF1:0.526956894067;ARID5B:0.490981195622;ESR1:0.463793412692;ZNF423:0.462207643848;RXRA_VDR{dimer}:0.460553434092;MAFB:0.443768016103;LHX3,4:0.434565856656;HOX{A5,B5}:0.408501778052;REST:0.40405065017;MTE{core}:0.388194074738;NFE2L2:0.378161921541;IRF1,2:0.372388252522;HLF:0.353334201;GTF2I:0.338051069311;TFAP2B:0.309290007172;NR3C1:0.306744966245;HIC1:0.26907175589;GFI1B:0.251951925869;BACH2:0.236581729927;SPZ1:0.228598238392;FOSL2:0.21374493195;FOS_FOS{B,L1}_JUN{B,D}:0.205452195128;CRX:0.199200347566;ALX1:0.196838654759;XCPE1{core}:0.19676318542;POU6F1:0.193460727132;POU2F1..3:0.191391037312;STAT5{A,B}:0.189657643143;AHR_ARNT_ARNT2:0.176403881302;STAT2,4,6:0.15635006021;POU1F1:0.150388269786;SOX17:0.146363225066;MZF1:0.145109811217;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.143473801674;CDC5L:0.13823450777;EVI1:0.128158768236;HNF1A:0.122118011215;NHLH1,2:0.11120699947;NKX3-2:0.0887089908949;ELK1,4_GABP{A,B1}:0.0800634308526;PATZ1:0.0794367320527;JUN:0.075437080062;ADNP_IRX_SIX_ZHX:0.0706183738459;PAX1,9:0.0539007727191;AR:0.035758631975;MYFfamily:0.0281456663858;NFKB1_REL_RELA:0.0151260634354;SP1:-0.0128525626905;MAZ:-0.0527884333992;MEF2{A,B,C,D}:-0.0597902864475;PRDM1:-0.0634085917131;ZFP161:-0.0651418765054;PAX6:-0.0794440807742;CEBPA,B_DDIT3:-0.0816314532445;NR6A1:-0.103930676876;MED-1{core}:-0.118431975079;PAX2:-0.123489988221;PAX3,7:-0.143548166931;TGIF1:-0.15611375763;VSX1,2:-0.167463068922;LMO2:-0.194967379922;MYB:-0.198667238152;ETS1,2:-0.198746084285;YY1:-0.202386099806;PAX8:-0.203953516127;MYOD1:-0.206511931191;HOX{A6,A7,B6,B7}:-0.211312980285;LEF1_TCF7_TCF7L1,2:-0.211724573855;NFE2:-0.219142913825;RUNX1..3:-0.238254496236;ELF1,2,4:-0.250988897238;HMGA1,2:-0.257509337556;POU5F1:-0.270867701308;bHLH_family:-0.300813695858;HBP1_HMGB_SSRP1_UBTF:-0.307476924435;HOX{A4,D4}:-0.331097914286;RFX1:-0.334470973063;SPI1:-0.363048650324;HNF4A_NR2F1,2:-0.368956142426;NRF1:-0.378539864814;SOX{8,9,10}:-0.38226386974;IKZF2:-0.383270705045;SNAI1..3:-0.389493631395;ZEB1:-0.394864325473;ATF5_CREB3:-0.397555084079;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.397770827333;NFIL3:-0.39854571523;EGR1..3:-0.402793411368;ZNF384:-0.403469846883;PRRX1,2:-0.409584809839;SPIB:-0.41208687484;AIRE:-0.430097604451;NR5A1,2:-0.485833220011;GATA6:-0.502118440971;ZNF143:-0.504498693692;CREB1:-0.512113984894;BPTF:-0.542499592198;EP300:-0.54583250562;FOX{D1,D2}:-0.54591026633;PBX1:-0.54738455965;ATF2:-0.579574323825;NR1H4:-0.610303062568;FOXN1:-0.624214072821;RREB1:-0.627814344699;FOXP3:-0.677656241823;FOXO1,3,4:-0.690763076532;FOXD3:-0.706676112215;DMAP1_NCOR{1,2}_SMARC:-0.712380316301;FOXM1:-0.714326227467;TOPORS:-0.752302011957;GATA4:-0.762971956845;SOX2:-0.788325361698;CDX1,2,4:-0.807190025118;SOX5:-0.813125011465;DBP:-0.814237925198;TLX2:-0.851847570464;T:-0.864891871506;GFI1:-0.893425819125;SREBF1,2:-0.894563441449;NANOG:-0.898372313354;ATF4:-0.912108228521;TEF:-0.958503449073;RORA:-0.974650411534;TFDP1:-1.00638937974;RFX2..5_RFXANK_RFXAP:-1.01089738128;FOXQ1:-1.03655743311;FOX{F1,F2,J1}:-1.06085278335;PDX1:-1.10319710835;PITX1..3:-1.12414556188;OCT4_SOX2{dimer}:-1.15492031852;E2F1..5:-1.16741662303;RBPJ:-1.17167003372;CUX2:-1.1800097464;NKX2-3_NKX2-5:-1.21140204579;FOXP1:-1.22225203625;STAT1,3:-1.2607405709;ZBTB16:-1.296194008;NFY{A,B,C}:-1.29697480181;BREu{core}:-1.44387173143;FOXA2:-1.44707214474;PAX4:-1.60249042842;NKX2-1,4:-1.62826663734;NKX6-1,2:-2.11425654154 | |top_motifs=PPARG:2.65132014225;HIF1A:2.13071926353;ALX4:1.94830397348;NFE2L1:1.67538721944;GCM1,2:1.62894206982;ZBTB6:1.6022380438;ZIC1..3:1.57372346407;EBF1:1.44844461946;HMX1:1.40949317241;NKX2-2,8:1.38502612087;HES1:1.38465378975;IKZF1:1.26674954518;GZF1:1.21877454913;GTF2A1,2:1.16854203778;EN1,2:1.16695380701;TFAP4:1.14230699681;UFEwm:1.13277938579;NFATC1..3:1.0754356196;ATF6:1.04774779788;TLX1..3_NFIC{dimer}:1.04062850361;HAND1,2:1.03646599703;GLI1..3:1.02020841282;ESRRA:1.0010942864;HSF1,2:0.986639239979;SMAD1..7,9:0.980380128306;TBP:0.953438659585;ONECUT1,2:0.939883955938;TEAD1:0.938471412513;NKX3-1:0.932351943946;ZNF238:0.923929551836;RXR{A,B,G}:0.836530727124;SRF:0.82389666535;FOXL1:0.819986631166;TAL1_TCF{3,4,12}:0.747882370811;NANOG{mouse}:0.724697825888;XBP1:0.718508218962;TP53:0.716710896283;POU3F1..4:0.711932424763;NFIX:0.701046914753;FOX{I1,J2}:0.694838796386;HOXA9_MEIS1:0.668247728553;MYBL2:0.661666002984;TFAP2{A,C}:0.65340401184;TFCP2:0.631035190825;PAX5:0.626653221348;ZNF148:0.595571326868;TBX4,5:0.549205920547;KLF4:0.548620473576;IRF7:0.544924435442;MTF1:0.526956894067;ARID5B:0.490981195622;ESR1:0.463793412692;ZNF423:0.462207643848;RXRA_VDR{dimer}:0.460553434092;MAFB:0.443768016103;LHX3,4:0.434565856656;HOX{A5,B5}:0.408501778052;REST:0.40405065017;MTE{core}:0.388194074738;NFE2L2:0.378161921541;IRF1,2:0.372388252522;HLF:0.353334201;GTF2I:0.338051069311;TFAP2B:0.309290007172;NR3C1:0.306744966245;HIC1:0.26907175589;GFI1B:0.251951925869;BACH2:0.236581729927;SPZ1:0.228598238392;FOSL2:0.21374493195;FOS_FOS{B,L1}_JUN{B,D}:0.205452195128;CRX:0.199200347566;ALX1:0.196838654759;XCPE1{core}:0.19676318542;POU6F1:0.193460727132;POU2F1..3:0.191391037312;STAT5{A,B}:0.189657643143;AHR_ARNT_ARNT2:0.176403881302;STAT2,4,6:0.15635006021;POU1F1:0.150388269786;SOX17:0.146363225066;MZF1:0.145109811217;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.143473801674;CDC5L:0.13823450777;EVI1:0.128158768236;HNF1A:0.122118011215;NHLH1,2:0.11120699947;NKX3-2:0.0887089908949;ELK1,4_GABP{A,B1}:0.0800634308526;PATZ1:0.0794367320527;JUN:0.075437080062;ADNP_IRX_SIX_ZHX:0.0706183738459;PAX1,9:0.0539007727191;AR:0.035758631975;MYFfamily:0.0281456663858;NFKB1_REL_RELA:0.0151260634354;SP1:-0.0128525626905;MAZ:-0.0527884333992;MEF2{A,B,C,D}:-0.0597902864475;PRDM1:-0.0634085917131;ZFP161:-0.0651418765054;PAX6:-0.0794440807742;CEBPA,B_DDIT3:-0.0816314532445;NR6A1:-0.103930676876;MED-1{core}:-0.118431975079;PAX2:-0.123489988221;PAX3,7:-0.143548166931;TGIF1:-0.15611375763;VSX1,2:-0.167463068922;LMO2:-0.194967379922;MYB:-0.198667238152;ETS1,2:-0.198746084285;YY1:-0.202386099806;PAX8:-0.203953516127;MYOD1:-0.206511931191;HOX{A6,A7,B6,B7}:-0.211312980285;LEF1_TCF7_TCF7L1,2:-0.211724573855;NFE2:-0.219142913825;RUNX1..3:-0.238254496236;ELF1,2,4:-0.250988897238;HMGA1,2:-0.257509337556;POU5F1:-0.270867701308;bHLH_family:-0.300813695858;HBP1_HMGB_SSRP1_UBTF:-0.307476924435;HOX{A4,D4}:-0.331097914286;RFX1:-0.334470973063;SPI1:-0.363048650324;HNF4A_NR2F1,2:-0.368956142426;NRF1:-0.378539864814;SOX{8,9,10}:-0.38226386974;IKZF2:-0.383270705045;SNAI1..3:-0.389493631395;ZEB1:-0.394864325473;ATF5_CREB3:-0.397555084079;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.397770827333;NFIL3:-0.39854571523;EGR1..3:-0.402793411368;ZNF384:-0.403469846883;PRRX1,2:-0.409584809839;SPIB:-0.41208687484;AIRE:-0.430097604451;NR5A1,2:-0.485833220011;GATA6:-0.502118440971;ZNF143:-0.504498693692;CREB1:-0.512113984894;BPTF:-0.542499592198;EP300:-0.54583250562;FOX{D1,D2}:-0.54591026633;PBX1:-0.54738455965;ATF2:-0.579574323825;NR1H4:-0.610303062568;FOXN1:-0.624214072821;RREB1:-0.627814344699;FOXP3:-0.677656241823;FOXO1,3,4:-0.690763076532;FOXD3:-0.706676112215;DMAP1_NCOR{1,2}_SMARC:-0.712380316301;FOXM1:-0.714326227467;TOPORS:-0.752302011957;GATA4:-0.762971956845;SOX2:-0.788325361698;CDX1,2,4:-0.807190025118;SOX5:-0.813125011465;DBP:-0.814237925198;TLX2:-0.851847570464;T:-0.864891871506;GFI1:-0.893425819125;SREBF1,2:-0.894563441449;NANOG:-0.898372313354;ATF4:-0.912108228521;TEF:-0.958503449073;RORA:-0.974650411534;TFDP1:-1.00638937974;RFX2..5_RFXANK_RFXAP:-1.01089738128;FOXQ1:-1.03655743311;FOX{F1,F2,J1}:-1.06085278335;PDX1:-1.10319710835;PITX1..3:-1.12414556188;OCT4_SOX2{dimer}:-1.15492031852;E2F1..5:-1.16741662303;RBPJ:-1.17167003372;CUX2:-1.1800097464;NKX2-3_NKX2-5:-1.21140204579;FOXP1:-1.22225203625;STAT1,3:-1.2607405709;ZBTB16:-1.296194008;NFY{A,B,C}:-1.29697480181;BREu{core}:-1.44387173143;FOXA2:-1.44707214474;PAX4:-1.60249042842;NKX2-1,4:-1.62826663734;NKX6-1,2:-2.11425654154 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11438-118H7;search_select_hide=table117:FF:11438-118H7 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Smooth Muscle Cells - Subclavian Artery, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12048 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12048
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12048
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.876 |
| 10 | 10 | 0.833 |
| 100 | 100 | 0.467 |
| 101 | 101 | 0.277 |
| 102 | 102 | 0.775 |
| 103 | 103 | 0.0333 |
| 104 | 104 | 0.432 |
| 105 | 105 | 0.465 |
| 106 | 106 | 0.0484 |
| 107 | 107 | 0.0689 |
| 108 | 108 | 0.693 |
| 109 | 109 | 0.121 |
| 11 | 11 | 0.142 |
| 110 | 110 | 0.638 |
| 111 | 111 | 0.76 |
| 112 | 112 | 0.351 |
| 113 | 113 | 0.0625 |
| 114 | 114 | 0.108 |
| 115 | 115 | 0.0487 |
| 116 | 116 | 0.0332 |
| 117 | 117 | 0.5 |
| 118 | 118 | 0.546 |
| 119 | 119 | 0.596 |
| 12 | 12 | 0.623 |
| 120 | 120 | 0.0824 |
| 121 | 121 | 0.97 |
| 122 | 122 | 0.336 |
| 123 | 123 | 0.00867 |
| 124 | 124 | 0.522 |
| 125 | 125 | 0.557 |
| 126 | 126 | 0.625 |
| 127 | 127 | 0.69 |
| 128 | 128 | 0.134 |
| 129 | 129 | 0.97 |
| 13 | 13 | 0.653 |
| 130 | 130 | 0.85 |
| 131 | 131 | 0.339 |
| 132 | 132 | 0.726 |
| 133 | 133 | 0.381 |
| 134 | 134 | 0.775 |
| 135 | 135 | 0.0544 |
| 136 | 136 | 0.407 |
| 137 | 137 | 0.828 |
| 138 | 138 | 0.587 |
| 139 | 139 | 0.0815 |
| 14 | 14 | 0.481 |
| 140 | 140 | 0.839 |
| 141 | 141 | 0.668 |
| 142 | 142 | 0.574 |
| 143 | 143 | 0.0895 |
| 144 | 144 | 0.592 |
| 145 | 145 | 0.626 |
| 146 | 146 | 0.795 |
| 147 | 147 | 0.0723 |
| 148 | 148 | 0.56 |
| 149 | 149 | 0.0377 |
| 15 | 15 | 0.86 |
| 150 | 150 | 0.164 |
| 151 | 151 | 0.569 |
| 152 | 152 | 0.0253 |
| 153 | 153 | 0.242 |
| 154 | 154 | 0.951 |
| 155 | 155 | 0.166 |
| 156 | 156 | 0.639 |
| 157 | 157 | 0.607 |
| 158 | 158 | 0.0277 |
| 159 | 159 | 0.309 |
| 16 | 16 | 0.0381 |
| 160 | 160 | 0.19 |
| 161 | 161 | 0.663 |
| 162 | 162 | 0.954 |
| 163 | 163 | 0.757 |
| 164 | 164 | 0.176 |
| 165 | 165 | 0.741 |
| 166 | 166 | 0.0496 |
| 167 | 167 | 0.468 |
| 168 | 168 | 0.31 |
| 169 | 169 | 0.0834 |
| 17 | 17 | 0.163 |
| 18 | 18 | 0.0627 |
| 19 | 19 | 0.0487 |
| 2 | 2 | 0.2 |
| 20 | 20 | 0.427 |
| 21 | 21 | 0.41 |
| 22 | 22 | 0.184 |
| 23 | 23 | 0.0481 |
| 24 | 24 | 0.362 |
| 25 | 25 | 0.312 |
| 26 | 26 | 0.886 |
| 27 | 27 | 0.447 |
| 28 | 28 | 0.206 |
| 29 | 29 | 0.169 |
| 3 | 3 | 0.426 |
| 30 | 30 | 0.274 |
| 31 | 31 | 0.525 |
| 32 | 32 | 5.34805e-5 |
| 33 | 33 | 0.959 |
| 34 | 34 | 0.686 |
| 35 | 35 | 0.541 |
| 36 | 36 | 0.0674 |
| 37 | 37 | 0.0788 |
| 38 | 38 | 0.731 |
| 39 | 39 | 0.171 |
| 4 | 4 | 0.701 |
| 40 | 40 | 0.736 |
| 41 | 41 | 0.336 |
| 42 | 42 | 0.959 |
| 43 | 43 | 0.328 |
| 44 | 44 | 0.161 |
| 45 | 45 | 0.41 |
| 46 | 46 | 0.31 |
| 47 | 47 | 0.442 |
| 48 | 48 | 0.384 |
| 49 | 49 | 0.777 |
| 5 | 5 | 0.664 |
| 50 | 50 | 0.748 |
| 51 | 51 | 0.733 |
| 52 | 52 | 0.897 |
| 53 | 53 | 0.24 |
| 54 | 54 | 0.5 |
| 55 | 55 | 0.265 |
| 56 | 56 | 0.642 |
| 57 | 57 | 0.788 |
| 58 | 58 | 0.836 |
| 59 | 59 | 0.0156 |
| 6 | 6 | 0.873 |
| 60 | 60 | 0.492 |
| 61 | 61 | 0.928 |
| 62 | 62 | 0.648 |
| 63 | 63 | 0.275 |
| 64 | 64 | 0.974 |
| 65 | 65 | 0.19 |
| 66 | 66 | 0.284 |
| 67 | 67 | 0.212 |
| 68 | 68 | 0.695 |
| 69 | 69 | 0.52 |
| 7 | 7 | 0.592 |
| 70 | 70 | 0.0371 |
| 71 | 71 | 0.547 |
| 72 | 72 | 0.923 |
| 73 | 73 | 0.0055 |
| 74 | 74 | 0.728 |
| 75 | 75 | 0.326 |
| 76 | 76 | 0.817 |
| 77 | 77 | 0.00217 |
| 78 | 78 | 0.895 |
| 79 | 79 | 0.012 |
| 8 | 8 | 0.156 |
| 80 | 80 | 0.717 |
| 81 | 81 | 0.771 |
| 82 | 82 | 0.573 |
| 83 | 83 | 0.905 |
| 84 | 84 | 0.608 |
| 85 | 85 | 0.0254 |
| 86 | 86 | 0.365 |
| 87 | 87 | 0.00644 |
| 88 | 88 | 0.368 |
| 89 | 89 | 0.0105 |
| 9 | 9 | 0.264 |
| 90 | 90 | 0.823 |
| 91 | 91 | 0.6 |
| 92 | 92 | 0.357 |
| 93 | 93 | 0.464 |
| 94 | 94 | 0.907 |
| 95 | 95 | 0.249 |
| 96 | 96 | 0.699 |
| 97 | 97 | 0.805 |
| 98 | 98 | 0.754 |
| 99 | 99 | 0.0341 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12048
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000175 human smooth muscle cell of subclavian artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000175 (human smooth muscle cell of subclavian artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
