FFCP PHASE1:Hg19::chr10:14050416..14050460,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55691 | |EntrezGene=55691 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25491 | |HGNC=25491 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T378 | |UniProt=Q5T378 | ||
|association_with_transcript=71bp_to_ENST00000342409_5end | |association_with_transcript=71bp_to_ENST00000342409_5end | ||
|cluster_id=chr10:14050416..14050460,- | |||
|coexpression_cluster_id=C2994 | |||
|description=CAGE_peak_5_at_FRMD4A_5end | |description=CAGE_peak_5_at_FRMD4A_5end | ||
|id=chr10:14050416..14050460,- | |id=chr10:14050416..14050460,- | ||
|ontology_enrichment_celltype=CL:0000055!1.73e-07!180;CL:0000359!1.90e-07!32 | |ontology_enrichment_celltype=CL:0000055!1.73e-07!180;CL:0000359!1.90e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000359;2.87e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.56e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!9.35e-17!286;UBERON:0004111!2.07e-15!241;UBERON:0000055!5.39e-15!69;UBERON:0000025!3.75e-14!194;UBERON:0002049!3.95e-14!79;UBERON:0007798!3.95e-14!79;UBERON:0004872!6.83e-14!84;UBERON:0001981!9.29e-14!60;UBERON:0007500!9.29e-14!60;UBERON:0004537!9.29e-14!60;UBERON:0006965!9.29e-14!60;UBERON:0007023!4.36e-13!115;UBERON:0004573!2.73e-12!33;UBERON:0004571!2.73e-12!33;UBERON:0001637!2.58e-11!42;UBERON:0003509!2.58e-11!42;UBERON:0004572!2.58e-11!42;UBERON:0000475!5.66e-11!365;UBERON:0000119!8.85e-11!312;UBERON:0000483!2.37e-10!309;UBERON:0001009!5.29e-10!113;UBERON:0004535!8.83e-10!110;UBERON:0000467!2.48e-09!625;UBERON:0000468!2.49e-09!659;UBERON:0001049!2.65e-09!57;UBERON:0005068!2.65e-09!57;UBERON:0006241!2.65e-09!57;UBERON:0007135!2.65e-09!57;UBERON:0000480!3.61e-09!626;UBERON:0000947!1.46e-08!21;UBERON:0010191!1.46e-08!21;UBERON:0000481!1.85e-08!347;UBERON:0002616!2.62e-08!59;UBERON:0003914!3.51e-08!118;UBERON:0000955!4.16e-08!69;UBERON:0006238!4.16e-08!69;UBERON:0000073!6.60e-08!94;UBERON:0001016!6.60e-08!94;UBERON:0001017!9.30e-08!82;UBERON:0003080!1.43e-07!42;UBERON:0005743!1.51e-07!86;UBERON:0002780!1.81e-07!41;UBERON:0001890!1.81e-07!41;UBERON:0006240!1.81e-07!41;UBERON:0002385!4.64e-07!63;UBERON:0001015!4.64e-07!63;UBERON:0000383!4.64e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.40e-13;33!UBERON:0004571;1.40e-13;33!UBERON:0001637;1.59e-10;42!UBERON:0003509;1.59e-10;42!UBERON:0004572;1.59e-10;42!UBERON:0000947;7.26e-10;21!UBERON:0010191;7.26e-10;21!UBERON:0000055;6.96e-09;65!UBERON:0007500;1.22e-07;56!UBERON:0001981;1.22e-07;56!UBERON:0004537;1.22e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.44e-16,68;UBERON:0004872,6.36e-15,83;UBERON:0004573,7.07e-15,33;UBERON:0004571,7.07e-15,33;UBERON:0007500,8.04e-15,59;UBERON:0001981,8.04e-15,59;UBERON:0004537,8.04e-15,59;UBERON:0006965,8.04e-15,59;UBERON:0004111,1.58e-13,240;UBERON:0001637,1.83e-13,42;UBERON:0003509,1.83e-13,42;UBERON:0004572,1.83e-13,42;UBERON:0002049,3.70e-13,78;UBERON:0007798,3.70e-13,78;UBERON:0000025,1.58e-11,192;UBERON:0000947,5.36e-10,21;UBERON:0010191,5.36e-10,21;UBERON:0004535,6.51e-09,109;UBERON:0001009,9.94e-09,112;UBERON:0003914,2.03e-08,117;UBERON:0000119,4.56e-07,309;UBERON:0000483,7.71e-07,306 | |||
|phase1_expression=0,0,0.563817616383885,0,0.446961094427288,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0.123766352960047,0,2.01697543935533,2.41077811209591,0.730310090387373,5.36726078669558,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0.251085279189606,1.75750833220288,1.55991119954897,1.10195093839151,0,0,0,0,0,0,0,0.568676929949686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0.393419540227666,0.393010762749165,0.616804496998528,0.167186495390678,0.32592226663359,0.946895611469467,0,0.334231370655521,0,0.664601683750863,1.08321545506006,0.640456598628376,0.520237390239513,0.328875809207352,0,0.579606171470105,0.14828656316206,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.403213486449465,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,1.94653948121054,0,0,0.175669571386252,1.30979075497713,0,0,0,0,0,0,0,0,1.98762407366705,1.72046919021225,4.51282652089873,2.82653970962005,1.25849830862972,0,1.04497483268405,1.03366703667732,1.42306505074684,3.3472061276467,1.61131726843659,0.760272105718513,2.92874469057803,1.10298924103761,0,1.16089646769304,2.91888184414021,2.59006405111641,0,0,0.732806975721629,0,0,0,9.44246708221105,1.64619665163954,13.5057364429483,5.16305917347865,2.4826786753885,1.12135520028461,0,0,0,1.75123873690594,0.163461903113459,0.756787138224657,0.576175924479999,0,0.624320153660641,1.1409436430889,0.149448680551801,0,0.161872944368132,0.421352420106746,1.42907919878425,0.491337269247072,0.516628905878827,2.37600571456411,1.23633464639278,0.910161361938026,0,0.336672227908132,0.500474079487857,0.277064115484183,2.19488810440419,2.14541457059314,3.60571341375832,0.226864366320042,1.97328599257748,2.34913127700424,1.05965950579781,0.300091096084402,0.92747276314595,2.06112432036503,0.930584281657949,0.168776332241266,0.292311015483596,0.757301322732344,0.920498986422993,0.323292113637624,0.710019185033229,0,1.52604533079439,0,0,0,0,0,0,0.10366105501537,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,0,0.4115740113314,0,0,0,5.31710916013264,0,0,0.171567810298526,0,0,0,0,0.651616610620649,0,0,0.927443239800615,0.469634776943287,4.33099343283221,3.24089858803628,1.90254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,7.46381215946779,5.47655822984453,3.53478813593864,0.380987365753014,0.381988425558278,0,0,0,0,0.285826432630578,1.12131084345361,1.30788020649984,0.51336800074665,3.61960804121778,0,0,1.32969058292435,0,0.257207374262142,0,0.532844358032199,0.285955987316295,0.542621605391443,0,1.62868092146868,0,0,0.602878754119172,0,0,0,0,0,3.59437283237374,3.44585807502342,4.27910715122155,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0.128343036279748,1.01637849688985,1.30139853857622,0,0.335032530668698,0,0,0,0,0,0,0,3.74347550755453,2.3195768543631,1.10391690523754,2.45996971484698,0,0,1.03473071292505,0,0,1.21637060255316,0,0,0.206768026122887,0,0,0,1.66435439510497,0,0.496215615637554,0.767309866440312,0.561320188866147,1.40953064181271,0,1.60853921143608,0,0.616838775210622,0.177561725313127,0.164254312027618,2.59627214591811,0,0,0,0,0.459257792658427,1.45672934405374,1.04899531967539,0,0,0,0,0.105551628892876,2.27466768141793,1.19065593693561,1.29549549661284,1.54227252690289,0.541892875087706,1.00337954770971,0,0,0,0,0,0,0.328014645699706,0,1.64865618636356,4.76161217055386,6.35323149388527,1.72279661398852,0.650060246036521,1.6068392984416,0.290012154876366,0,0,0.964856007391714,0.107420244868274,0.290033387828457,0.255679882248303,0.445160178233687,0,0,0,0,0.464845549297286,5.98143458978216,1.3940745403212,1.23213432070436,2.12922412126809,2.60979897622522,4.81842969670192,4.8662461492277,0,2.84741482246853,0.190630193923825,0,0.42793898803392,0.318203247925937,10.20433232259,0.899362287916574,1.09814811894422,0.942499218765491,2.02182481573316,0,2.10629228119491,0,1.70599442741899,4.22600587027022,1.9109987597118,1.41405431953713,0,1.10273068709225,2.65375590096488,2.63070531152258,0,0,4.66693867014219,0,0.563391205064483,0.143411352204052,0.196498082026242,2.1400263088875,0.709522128141196,1.26664581178598,1.97576935775941,0.379473173765715,0.349934720244983,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3246373947405,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0,1.9882952955326,0.984685914873589,3.56187856073299,0,0,2.78947183551498,1.93398740871803,0,0.613612095012929,0,9.33118762985422,0.629078458031288,0,0,0.986434056369336,0,3.33410970433911,0.969332746095218,0.927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,1.73624994933292,5.31444831488303,0.964771509003264,0,0.663475559587348,0.295547618953547,0,0,0,1.15425387755696,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0.884575645033392,1.22206028986725,0.889563386041866,0.247127877893006,0.313265848516366,1.88723172345896,12.8412423567806,0,0,0,0,0.394584402849391,2.41981432097328,0.91821828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| ||
|short_description=p5@FRMD4A | |short_description=p5@FRMD4A | ||
}} | }} |
Latest revision as of 07:04, 17 September 2015
Short description: | p5@FRMD4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_FRMD4A_5end |
Coexpression cluster: | C2994_osteosarcoma_Fibroblast_mesodermal_Wilms_fibrous_Lymphatic_neuroectodermal |
Association with transcript: | 71bp_to_ENST00000342409_5end |
EntrezGene: | FRMD4A |
HGNC: | 25491 |
UniProt: | Q5T378 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.56e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
vessel | 2.44e-16 | 68 |
splanchnic layer of lateral plate mesoderm | 6.36e-15 | 83 |
systemic artery | 7.07e-15 | 33 |
systemic arterial system | 7.07e-15 | 33 |
epithelial tube open at both ends | 8.04e-15 | 59 |
blood vessel | 8.04e-15 | 59 |
blood vasculature | 8.04e-15 | 59 |
vascular cord | 8.04e-15 | 59 |
anatomical conduit | 1.58e-13 | 240 |
artery | 1.83e-13 | 42 |
arterial blood vessel | 1.83e-13 | 42 |
arterial system | 1.83e-13 | 42 |
vasculature | 3.70e-13 | 78 |
vascular system | 3.70e-13 | 78 |
tube | 1.58e-11 | 192 |
aorta | 5.36e-10 | 21 |
aortic system | 5.36e-10 | 21 |
cardiovascular system | 6.51e-09 | 109 |
circulatory system | 9.94e-09 | 112 |
epithelial tube | 2.03e-08 | 117 |
cell layer | 4.56e-07 | 309 |
epithelium | 7.71e-07 | 306 |