FFCP PHASE1:Mm9::chr11:87912658..87912683,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=103841 | |EntrezGene=103841 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q8R3V6,A2RS63 | |UniProt=Q8R3V6,A2RS63 | ||
|association_with_transcript=10bp_to_ENSMUST00000018522,NM_198013,uc007kvg.2,uc007kvh.2_5end | |association_with_transcript=10bp_to_ENSMUST00000018522,NM_198013,uc007kvg.2,uc007kvh.2_5end | ||
|cluster_id=chr11:87912658..87912683,+ | |||
|description=CAGE_peak_3_at_Cuedc1_5end | |description=CAGE_peak_3_at_Cuedc1_5end | ||
|id=chr11:87912658..87912683,+ | |id=chr11:87912658..87912683,+ | ||
|ontology_enrichment_celltype=CL:0000393!3.24e-16!39;CL:0000211!3.24e-16!39;CL:0000055!3.26e-15!50;CL:0000540!4.26e-14!33;CL:0000047!4.26e-14!33;CL:0000031!4.26e-14!33;CL:0000404!4.26e-14!33;CL:0002319!4.47e-14!43;CL:0000221!1.19e-13!44;CL:0000133!1.19e-13!44;CL:0000117!2.94e-09!23;CL:0000337!2.94e-09!23;CL:0002321!1.45e-07!70;CL:0000220!1.45e-07!70 | |ontology_enrichment_celltype=CL:0000393!3.24e-16!39;CL:0000211!3.24e-16!39;CL:0000055!3.26e-15!50;CL:0000540!4.26e-14!33;CL:0000047!4.26e-14!33;CL:0000031!4.26e-14!33;CL:0000404!4.26e-14!33;CL:0002319!4.47e-14!43;CL:0000221!1.19e-13!44;CL:0000133!1.19e-13!44;CL:0000117!2.94e-09!23;CL:0000337!2.94e-09!23;CL:0002321!1.45e-07!70;CL:0000220!1.45e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.68e-16,39;CL:0000211,1.68e-16,39;CL:0000540,2.42e-14,33;CL:0000047,2.42e-14,33;CL:0000031,2.42e-14,33;CL:0000404,2.42e-14,33;CL:0002319,5.64e-14,43;CL:0000221,1.50e-13,44;CL:0000133,1.50e-13,44;CL:0000117,2.07e-09,23;CL:0000337,2.07e-09,23;CL:0002321,4.84e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.40e-20!73;UBERON:0005743!1.40e-20!73;UBERON:0000073!2.98e-19!75;UBERON:0001016!2.98e-19!75;UBERON:0004121!5.55e-18!102;UBERON:0000924!5.55e-18!102;UBERON:0006601!5.55e-18!102;UBERON:0002346!3.99e-14!71;UBERON:0003075!3.99e-14!71;UBERON:0007284!3.99e-14!71;UBERON:0001049!5.55e-12!52;UBERON:0005068!5.55e-12!52;UBERON:0006241!5.55e-12!52;UBERON:0007135!5.55e-12!52;UBERON:0000033!2.83e-10!63;UBERON:0000955!3.07e-10!50;UBERON:0006238!3.07e-10!50;UBERON:0002616!3.28e-10!49;UBERON:0000468!7.45e-08!333;UBERON:0003056!1.91e-07!49;UBERON:0003080!2.16e-07!40;UBERON:0002780!4.48e-07!39;UBERON:0001890!4.48e-07!39;UBERON:0006240!4.48e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.09e-21,73;UBERON:0001016,3.38e-19,75;UBERON:0004121,1.63e-16,95;UBERON:0000924,1.63e-16,95;UBERON:0006601,1.63e-16,95;UBERON:0010314,3.29e-16,92;UBERON:0002346,1.55e-13,64;UBERON:0003075,1.55e-13,64;UBERON:0007284,1.55e-13,64;UBERON:0000073,6.83e-13,54;UBERON:0001049,4.05e-12,52;UBERON:0005068,4.05e-12,52;UBERON:0006241,4.05e-12,52;UBERON:0007135,4.05e-12,52;UBERON:0010371,6.41e-11,73;UBERON:0000955,4.05e-09,47;UBERON:0006238,4.05e-09,47;UBERON:0002616,4.36e-09,46;UBERON:0003080,1.89e-07,40;UBERON:0003056,2.30e-07,49;UBERON:0002780,3.96e-07,39;UBERON:0001890,3.96e-07,39;UBERON:0006240,3.96e-07,39 | |||
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| ||
|short_description=p3@Cuedc1 | |short_description=p3@Cuedc1 | ||
}} | }} |
Latest revision as of 22:32, 25 September 2015
Short description: | p3@Cuedc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cuedc1_5end |
Coexpression cluster: | NA |
Association with transcript: | 10bp_to_ENSMUST00000018522, NM_198013, uc007kvg.2, uc007kvh.2_5end |
EntrezGene: | Cuedc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.68e-16 | 39 |
electrically active cell | 1.68e-16 | 39 |
neuron | 2.42e-14 | 33 |
neuronal stem cell | 2.42e-14 | 33 |
neuroblast | 2.42e-14 | 33 |
electrically signaling cell | 2.42e-14 | 33 |
neural cell | 5.64e-14 | 43 |
ectodermal cell | 1.50e-13 | 44 |
neurectodermal cell | 1.50e-13 | 44 |
CNS neuron (sensu Vertebrata) | 2.07e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.07e-09 | 23 |
embryonic cell | 4.84e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.09e-21 | 73 |
nervous system | 3.38e-19 | 75 |
ectoderm-derived structure | 1.63e-16 | 95 |
ectoderm | 1.63e-16 | 95 |
presumptive ectoderm | 1.63e-16 | 95 |
structure with developmental contribution from neural crest | 3.29e-16 | 92 |
neurectoderm | 1.55e-13 | 64 |
neural plate | 1.55e-13 | 64 |
presumptive neural plate | 1.55e-13 | 64 |
regional part of nervous system | 6.83e-13 | 54 |
neural tube | 4.05e-12 | 52 |
neural rod | 4.05e-12 | 52 |
future spinal cord | 4.05e-12 | 52 |
neural keel | 4.05e-12 | 52 |
ecto-epithelium | 6.41e-11 | 73 |
brain | 4.05e-09 | 47 |
future brain | 4.05e-09 | 47 |
regional part of brain | 4.36e-09 | 46 |
anterior neural tube | 1.89e-07 | 40 |
pre-chordal neural plate | 2.30e-07 | 49 |
regional part of forebrain | 3.96e-07 | 39 |
forebrain | 3.96e-07 | 39 |
future forebrain | 3.96e-07 | 39 |