FFCP PHASE1:Mm9::chr16:11984482..11984515,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=72555 | |EntrezGene=72555 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=E9QN38,Q9CZN4 | |UniProt=E9QN38,Q9CZN4 | ||
|association_with_transcript=-158bp_to_ENSMUST00000023138,ENSMUST00000170672_5end | |association_with_transcript=-158bp_to_ENSMUST00000023138,ENSMUST00000170672_5end | ||
|cluster_id=chr16:11984482..11984515,+ | |||
|description=CAGE_peak_2_at_Shisa9_5end | |description=CAGE_peak_2_at_Shisa9_5end | ||
|id=chr16:11984482..11984515,+ | |id=chr16:11984482..11984515,+ | ||
|ontology_enrichment_celltype=CL:0000117!3.23e-11!23;CL:0000337!3.23e-11!23;CL:0000540!3.51e-09!33;CL:0000047!3.51e-09!33;CL:0000031!3.51e-09!33;CL:0000404!3.51e-09!33;CL:0002319!1.70e-08!43;CL:0000221!2.69e-08!44;CL:0000133!2.69e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.94e-13,23;CL:0000337,6.94e-13,23;CL:0000540,6.36e-09,33;CL:0000047,6.36e-09,33;CL:0000031,6.36e-09,33;CL:0000404,6.36e-09,33;CL:0002319,3.77e-08,43;CL:0000221,9.88e-08,44;CL:0000133,9.88e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.16e-25!73;UBERON:0005743!2.16e-25!73;UBERON:0000073!3.75e-24!75;UBERON:0001016!3.75e-24!75;UBERON:0002346!1.48e-23!71;UBERON:0003075!1.48e-23!71;UBERON:0007284!1.48e-23!71;UBERON:0001049!5.17e-22!52;UBERON:0005068!5.17e-22!52;UBERON:0006241!5.17e-22!52;UBERON:0007135!5.17e-22!52;UBERON:0000955!4.11e-21!50;UBERON:0006238!4.11e-21!50;UBERON:0002616!2.36e-20!49;UBERON:0004121!2.40e-20!102;UBERON:0000924!2.40e-20!102;UBERON:0006601!2.40e-20!102;UBERON:0000033!5.41e-18!63;UBERON:0003080!1.04e-16!40;UBERON:0002020!2.63e-16!34;UBERON:0003056!4.40e-16!49;UBERON:0002780!5.44e-16!39;UBERON:0001890!5.44e-16!39;UBERON:0006240!5.44e-16!39;UBERON:0002791!2.88e-13!29;UBERON:0003528!2.88e-13!29;UBERON:0001893!2.88e-13!29;UBERON:0000025!2.24e-11!114;UBERON:0004111!3.45e-10!122;UBERON:0000468!3.66e-09!333;UBERON:0000956!5.31e-09!21;UBERON:0001869!5.31e-09!21;UBERON:0000203!5.31e-09!21;UBERON:0007811!9.07e-09!86;UBERON:0000153!2.13e-08!94;UBERON:0002619!3.11e-08!17;UBERON:0002021!1.98e-07!10;UBERON:0000411!1.98e-07!10;UBERON:0001950!1.98e-07!10;UBERON:0000922!7.13e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.40e-27,54;UBERON:0001017,3.59e-27,73;UBERON:0001016,9.49e-26,75;UBERON:0001049,3.12e-25,52;UBERON:0005068,3.12e-25,52;UBERON:0006241,3.12e-25,52;UBERON:0007135,3.12e-25,52;UBERON:0002346,7.34e-23,64;UBERON:0003075,7.34e-23,64;UBERON:0007284,7.34e-23,64;UBERON:0000955,1.65e-21,47;UBERON:0006238,1.65e-21,47;UBERON:0002616,1.32e-20,46;UBERON:0002020,7.91e-19,34;UBERON:0004121,8.90e-19,95;UBERON:0000924,8.90e-19,95;UBERON:0006601,8.90e-19,95;UBERON:0003080,2.83e-18,40;UBERON:0002780,2.11e-17,39;UBERON:0001890,2.11e-17,39;UBERON:0006240,2.11e-17,39;UBERON:0010371,2.50e-17,73;UBERON:0003056,1.76e-16,49;UBERON:0003528,4.55e-15,29;UBERON:0002791,4.55e-15,29;UBERON:0001893,4.55e-15,29;UBERON:0010314,1.33e-14,92;UBERON:0000956,8.19e-10,21;UBERON:0001869,8.19e-10,21;UBERON:0000203,8.19e-10,21;UBERON:0002021,6.35e-09,10;UBERON:0000411,6.35e-09,10;UBERON:0001950,6.35e-09,10;UBERON:0002619,8.33e-09,17;UBERON:0000025,1.84e-08,114;UBERON:0003076,1.55e-07,12;UBERON:0003057,1.55e-07,12;UBERON:0004111,1.73e-07,122 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.82694805679814,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05235218932625,0.439372365468944,1.74986909166855,0.419959264876088,1.43752564364972,0,0,0,0,0,0,5.26022798234954,5.81890077199236,4.43681982454325,0,0,0,0,0,4.19440154725767,7.68436610643109,1.14058573539325,1.62007125998029,1.89292465216244,20.8525218614777,16.1234034894678,1.95985278743926,0.958454710182364,4.5960939330501,18.7196997698961,24.0052195600153,21.9657342556428,5.27545150920775,5.94669683415663,5.2091337055676,16.7509799400829,21.9477417912355,17.1134037510027,17.9723437138937,17.938831780687,7.82877672466262,0.075726193333184,0.0755715601067855,14.4932244350839,0.860423876981386,0,0,0,0,0.561777680527007,0,0,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,0.517875767294343,2.3750742250372,2.94925055502431,3.04465478312141,5.07354093963329,2.26083960828934,3.17489509266403,0.502666365318702,0,0.289198713839823,0,0.323533699894818,0,0,0,11.7112318804619,6.28340120440365,0,0,0,0,35.6501721783478,17.3850229071078,4.14659361972453,24.3354048269187,23.0143911597297,29.0903262383384,21.2536054618763,10.2857757488819,0.497627882440372,4.29628689337247,3.78795340595653,0.130120442962704,0.459804208866946,1.44049703844279,1.20563854268572,1.02054748726992,0.768682321709099,0.374806898238915,9.57202471734358,0,0.189106080167819,0.703804496655795,0.657587197282725,1.66828349535359,1.39300866608867,1.4404749548556,3.78165106955137,0,0,0,0.414251545071004,0.938104239924385,0.36012412292203,1.89395788468168,0.787056926989615,0.925602677324269,0.930135779001631,0,0.350296027101508,0.329119699826961,0,0.0810688095458557,0.146199987425332,0.219550115291051,0,18.5055154736432,3.91037527041281,0.330418782983798,0.264450566663544,1.06644125267617,1.62565670302307,0.644337306610467,0.80673409849337,0.444756087689741,0.570676878337677,0,0.823494773620054,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0.199141273254367,1.32767530667157,2.17072173958485,1.1270773567308,0.814605311381257,0.387904974335251,0.210407459670956,0.126473074248515,0.295220295959204,0,0,0.592905254174298,0.667380422864376,0.982794975566015,0.449724224769707,0,0.964708639009667,0.25462585178142,0.575392274901621,0.972811360650212,0.549122826376163,0,0.744281895337007,0.624075346229121,0.757736633841335,0.358794827043824,0.964887042726734,0.369506380333209,3.60033682363921,4.07412441105065,4.07388205860452,1.87752198630802,2.68010011906905,1.19021820443007,1.56106918286239,1.57635144106191,1.7717175171902,1.2756381492599,1.47476983244164,0.172684981865896,0.578596234326046,3.01582567878545,0,0,0,11.559642479121,10.3146284201139,0,0,1.26203287766503,0.780877488593277,1.72338718186239,0.955875191810208,0.445597348164788,0,1.61924280669958,0.584511715822624,1.58115111178609,39.8438432363041,1.70328102249922,2.31485284767432,3.58351310577867,0.824850614862677,0,0.728341908464944,1.51161778482376,0.943025398779491,1.18120757152309,1.22974059177571,1.03371317267288,0.363533729477506,0,0,0,1.03135543248187,12.9367050186439,0.540183282093931,0.905510786479282,1.50035924522115,2.6601035046341,3.92411398724555,4.44282355625727,1.8267896946876,0.469343416127421,1.0591603543191,0.441056796109924,0.16488625294148,0.645857706783622,0.241251699712623,0.238744688006273,0,0,10.3838169125885,0.341741761595705,1.65109494370578,0.555583582109135,0,0,0,0,0,0.276399947608848,0,0.949007980743406,2.43983360552218,0.756037385752609,0.209088296014469,0.218362563746178,0.404593039154462,0.330613822901344,0,0.259229946583586,0,0,0.747582730219894,0.992750942742586,0.972255941720238,2.0665571756437,2.19642963138012,1.87771581833206,0.781226309063701,0.209718688851422,0,0,0.632022241256357,1.41907650703115,1.43795340030758,0.129920822977795,0.358053391334963,0.39736270956253,0.240390899039938,0.147689527174577,0.302899349844443,0.0762068066549998,0,0,0.0962118416403295,0.350630706544707,0,0.221985953374065,0,0,3.67060228661162,0.563047426353546,0.549454872801795,0,1.00314420807073,18.6368108063632,20.714635642823,18.9055519435001,20.1068223342114,13.0165678756422,21.9064230243013,16.2005400055633,14.4102785031751,14.9536994964788,12.9440077937955,0.207574695168353,0,2.39027048055788,2.43106717068294,1.46729213839588,0.735374033800057,1.33348036680969,1.23621034343337,3.20919209591815,3.03236654116557,1.77435509923168,2.82939512079114,1.68554713445788,2.75308155340938,2.5845961030026,1.90517476513229,2.31768651889711,1.92909220463705,3.29668720642645,1.91358596174717,1.71434626192708,2.30718548007139,2.62279808942053,3.34296758254356,1.97629698872194,2.36920902096694,2.19513567447327,0.789209134313529,1.7654534799962,2.80571135828869,2.49133538060766,2.26560309463796,3.6830793885272,2.94379998253335,2.12197272079256,4.24677982494508,2.10538447600868,2.57845264857958,0.57386499620653,0.661774257358546,0.927471342481686 | |phase1_expression=0.320297694209588,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.82694805679814,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05235218932625,0.439372365468944,1.74986909166855,0.419959264876088,1.43752564364972,0,0,0,0,0,0,5.26022798234954,5.81890077199236,4.43681982454325,0,0,0,0,0,4.19440154725767,7.68436610643109,1.14058573539325,1.62007125998029,1.89292465216244,20.8525218614777,16.1234034894678,1.95985278743926,0.958454710182364,4.5960939330501,18.7196997698961,24.0052195600153,21.9657342556428,5.27545150920775,5.94669683415663,5.2091337055676,16.7509799400829,21.9477417912355,17.1134037510027,17.9723437138937,17.938831780687,7.82877672466262,0.075726193333184,0.0755715601067855,14.4932244350839,0.860423876981386,0,0,0,0,0.561777680527007,0,0,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,0.517875767294343,2.3750742250372,2.94925055502431,3.04465478312141,5.07354093963329,2.26083960828934,3.17489509266403,0.502666365318702,0,0.289198713839823,0,0.323533699894818,0,0,0,11.7112318804619,6.28340120440365,0,0,0,0,35.6501721783478,17.3850229071078,4.14659361972453,24.3354048269187,23.0143911597297,29.0903262383384,21.2536054618763,10.2857757488819,0.497627882440372,4.29628689337247,3.78795340595653,0.130120442962704,0.459804208866946,1.44049703844279,1.20563854268572,1.02054748726992,0.768682321709099,0.374806898238915,9.57202471734358,0,0.189106080167819,0.703804496655795,0.657587197282725,1.66828349535359,1.39300866608867,1.4404749548556,3.78165106955137,0,0,0,0.414251545071004,0.938104239924385,0.36012412292203,1.89395788468168,0.787056926989615,0.925602677324269,0.930135779001631,0,0.350296027101508,0.329119699826961,0,0.0810688095458557,0.146199987425332,0.219550115291051,0,18.5055154736432,3.91037527041281,0.330418782983798,0.264450566663544,1.06644125267617,1.62565670302307,0.644337306610467,0.80673409849337,0.444756087689741,0.570676878337677,0,0.823494773620054,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0.199141273254367,1.32767530667157,2.17072173958485,1.1270773567308,0.814605311381257,0.387904974335251,0.210407459670956,0.126473074248515,0.295220295959204,0,0,0.592905254174298,0.667380422864376,0.982794975566015,0.449724224769707,0,0.964708639009667,0.25462585178142,0.575392274901621,0.972811360650212,0.549122826376163,0,0.744281895337007,0.624075346229121,0.757736633841335,0.358794827043824,0.964887042726734,0.369506380333209,3.60033682363921,4.07412441105065,4.07388205860452,1.87752198630802,2.68010011906905,1.19021820443007,1.56106918286239,1.57635144106191,1.7717175171902,1.2756381492599,1.47476983244164,0.172684981865896,0.578596234326046,3.01582567878545,0,0,0,11.559642479121,10.3146284201139,0,0,1.26203287766503,0.780877488593277,1.72338718186239,0.955875191810208,0.445597348164788,0,1.61924280669958,0.584511715822624,1.58115111178609,39.8438432363041,1.70328102249922,2.31485284767432,3.58351310577867,0.824850614862677,0,0.728341908464944,1.51161778482376,0.943025398779491,1.18120757152309,1.22974059177571,1.03371317267288,0.363533729477506,0,0,0,1.03135543248187,12.9367050186439,0.540183282093931,0.905510786479282,1.50035924522115,2.6601035046341,3.92411398724555,4.44282355625727,1.8267896946876,0.469343416127421,1.0591603543191,0.441056796109924,0.16488625294148,0.645857706783622,0.241251699712623,0.238744688006273,0,0,10.3838169125885,0.341741761595705,1.65109494370578,0.555583582109135,0,0,0,0,0,0.276399947608848,0,0.949007980743406,2.43983360552218,0.756037385752609,0.209088296014469,0.218362563746178,0.404593039154462,0.330613822901344,0,0.259229946583586,0,0,0.747582730219894,0.992750942742586,0.972255941720238,2.0665571756437,2.19642963138012,1.87771581833206,0.781226309063701,0.209718688851422,0,0,0.632022241256357,1.41907650703115,1.43795340030758,0.129920822977795,0.358053391334963,0.39736270956253,0.240390899039938,0.147689527174577,0.302899349844443,0.0762068066549998,0,0,0.0962118416403295,0.350630706544707,0,0.221985953374065,0,0,3.67060228661162,0.563047426353546,0.549454872801795,0,1.00314420807073,18.6368108063632,20.714635642823,18.9055519435001,20.1068223342114,13.0165678756422,21.9064230243013,16.2005400055633,14.4102785031751,14.9536994964788,12.9440077937955,0.207574695168353,0,2.39027048055788,2.43106717068294,1.46729213839588,0.735374033800057,1.33348036680969,1.23621034343337,3.20919209591815,3.03236654116557,1.77435509923168,2.82939512079114,1.68554713445788,2.75308155340938,2.5845961030026,1.90517476513229,2.31768651889711,1.92909220463705,3.29668720642645,1.91358596174717,1.71434626192708,2.30718548007139,2.62279808942053,3.34296758254356,1.97629698872194,2.36920902096694,2.19513567447327,0.789209134313529,1.7654534799962,2.80571135828869,2.49133538060766,2.26560309463796,3.6830793885272,2.94379998253335,2.12197272079256,4.24677982494508,2.10538447600868,2.57845264857958,0.57386499620653,0.661774257358546,0.927471342481686 | ||
|short_description=p2@Shisa9 | |short_description=p2@Shisa9 | ||
}} | }} |
Latest revision as of 15:20, 1 October 2015
Short description: | p2@Shisa9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Shisa9_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -158bp_to_ENSMUST00000023138, ENSMUST00000170672_5end |
EntrezGene: | Shisa9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.94e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.94e-13 | 23 |
neuron | 6.36e-09 | 33 |
neuronal stem cell | 6.36e-09 | 33 |
neuroblast | 6.36e-09 | 33 |
electrically signaling cell | 6.36e-09 | 33 |
neural cell | 3.77e-08 | 43 |
ectodermal cell | 9.88e-08 | 44 |
neurectodermal cell | 9.88e-08 | 44 |