FFCP PHASE1:Hg19::chr11:27076889..27076934,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8424 | |EntrezGene=8424 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=964 | |HGNC=964 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000527505,uc001mrg.1_5end | |association_with_transcript=0bp_to_ENST00000527505,uc001mrg.1_5end | ||
|cluster_id=chr11:27076889..27076934,+ | |||
|coexpression_cluster_id=C51 | |||
|description=CAGE_peak_1_at_BBOX1_5end | |description=CAGE_peak_1_at_BBOX1_5end | ||
|id=chr11:27076889..27076934,+ | |id=chr11:27076889..27076934,+ | ||
|ontology_enrichment_celltype=CL:0000136!3.21e-15!15;CL:0000128!5.19e-11!7;CL:0000126!5.19e-11!7;CL:0000127!5.19e-11!7;CL:0002453!5.19e-11!7;CL:0002617!1.28e-10!2;CL:0002615!1.93e-07!3;CL:0002603!3.04e-07!3;CL:0000325!8.23e-07!39 | |ontology_enrichment_celltype=CL:0000136!3.21e-15!15;CL:0000128!5.19e-11!7;CL:0000126!5.19e-11!7;CL:0000127!5.19e-11!7;CL:0002453!5.19e-11!7;CL:0002617!1.28e-10!2;CL:0002615!1.93e-07!3;CL:0002603!3.04e-07!3;CL:0000325!8.23e-07!39 | ||
|ontology_enrichment_celltype_v019=CL:0000946;1.61e-13;1!CL:0000786;1.61e-13;1!CL:0000945;1.57e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000946,2.07e-13,1;CL:0000786,2.07e-13,1;CL:0000980,2.07e-13,1;CL:0000945,1.65e-08,24;CL:0000826,1.65e-08,24;CL:0000785,2.40e-07,2;CL:0000955,2.40e-07,2;CL:0000818,2.40e-07,2;CL:0000954,2.40e-07,2;CL:0000816,2.40e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006242;1.61e-13;1!UBERON:0004161;1.25e-10;11!UBERON:0003104;5.47e-10;31!UBERON:0009497;4.45e-09;13!CL:0000954;2.12e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002417!1.80e-09!61;UBERON:0000916!1.80e-09!61;UBERON:0005172!2.08e-07!55;UBERON:0005173!2.08e-07!55;UBERON:0001896!4.74e-07!3;UBERON:0005290!4.74e-07!3;UBERON:0010096!4.74e-07!3;UBERON:0009497!7.59e-07!25;UBERON:0000015!7.59e-07!25;UBERON:0002423!7.59e-07!25;UBERON:0006235!7.59e-07!25;UBERON:0004161!7.59e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;2.67e-12;25!UBERON:0002107;1.08e-10;19!UBERON:0006925;1.08e-10;19!UBERON:0005172;1.14e-07;52!UBERON:0005173;1.14e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,2.45e-12,25;UBERON:0000015,2.45e-12,25;UBERON:0002423,2.45e-12,25;UBERON:0006235,2.45e-12,25;UBERON:0004161,2.45e-12,25;UBERON:0005172,9.74e-11,54;UBERON:0005173,9.74e-11,54;UBERON:0002107,1.04e-10,19;UBERON:0006925,1.04e-10,19;UBERON:0008836,1.04e-10,19;UBERON:0002417,1.32e-09,60;UBERON:0000916,1.32e-09,60;UBERON:0008835,2.79e-09,22;UBERON:0003894,2.79e-09,22;UBERON:0009854,6.91e-09,23;UBERON:0007499,3.42e-08,25;UBERON:0009856,6.95e-08,26 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0.446961094427288,0,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0,16.5052956415575,12.150887238592,13.9318082925212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,109.95693388033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.4914097501126,0.982827216677626,1.77236972004421,0,0.491953754172454,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.111596725567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.3706427763289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0.861593638227486,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,190.552200249461,19.8278343150293,0,0,0,0,0,0,0,0,0,0,0,0,0,12.456939862637,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22538230705385,0.327872630709804,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,1.03710588800201,0,0,0,0,0,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0.446961094427288,0,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0,16.5052956415575,12.150887238592,13.9318082925212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,109.95693388033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.4914097501126,0.982827216677626,1.77236972004421,0,0.491953754172454,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.111596725567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.3706427763289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0.861593638227486,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,190.552200249461,19.8278343150293,0,0,0,0,0,0,0,0,0,0,0,0,0,12.456939862637,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22538230705385,0.327872630709804,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,1.03710588800201,0,0,0,0,0,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p1@BBOX1 | |short_description=p1@BBOX1 | ||
}} | }} |
Latest revision as of 11:54, 17 September 2015
Short description: | p1@BBOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BBOX1_5end |
Coexpression cluster: | C51_kidney_mesothelioma_renal_signet_gall_lung_pancreas |
Association with transcript: | 0bp_to_ENST00000527505, uc001mrg.1_5end |
EntrezGene: | BBOX1 |
HGNC: | 964 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 2.07e-13 | 1 |
plasma cell | 2.07e-13 | 1 |
plasmablast | 2.07e-13 | 1 |
lymphocyte of B lineage | 1.65e-08 | 24 |
pro-B cell | 1.65e-08 | 24 |
mature B cell | 2.40e-07 | 2 |
pre-B-II cell | 2.40e-07 | 2 |
transitional stage B cell | 2.40e-07 | 2 |
small pre-B-II cell | 2.40e-07 | 2 |
immature B cell | 2.40e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 2.45e-12 | 25 |
anatomical boundary | 2.45e-12 | 25 |
hepatobiliary system | 2.45e-12 | 25 |
foregut-midgut junction | 2.45e-12 | 25 |
septum transversum | 2.45e-12 | 25 |
abdomen element | 9.74e-11 | 54 |
abdominal segment element | 9.74e-11 | 54 |
liver | 1.04e-10 | 19 |
digestive gland | 1.04e-10 | 19 |
liver bud | 1.04e-10 | 19 |
abdominal segment of trunk | 1.32e-09 | 60 |
abdomen | 1.32e-09 | 60 |
hepatic diverticulum | 2.79e-09 | 22 |
liver primordium | 2.79e-09 | 22 |
digestive tract diverticulum | 6.91e-09 | 23 |
epithelial sac | 3.42e-08 | 25 |
sac | 6.95e-08 | 26 |