Personal tools

DOID:3369: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{DOID |id=DOID:3369 |name=peripheral primitive neuroectodermal tumor |namespace= |def= |xref= |is_a=DOID:1192 |synonym="Ewing sarcoma" EXACT [];;"Ewing's sarcoma/perip...")
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:3369
|name=peripheral primitive neuroectodermal tumor
|namespace=
|def=
|xref=
|is_a=DOID:1192
|synonym="Ewing sarcoma" EXACT [];;"Ewing's sarcoma/peripheral primitive neuroectodermal tumor" EXACT [NCI2004_11_17:C27291];;"Ewing's tumor" EXACT [CSP2005:2008-4746];;"Ewing's tumor" EXACT [NCI2004_11_17:C4817];;"Ewings sarcoma" EXACT [];;"Ewings sarcoma-primitive neuroectodermal tumor" EXACT [];;"PNET of Thoracopulmonary Region" EXACT [NCI2004_11_17:C7542]
|comment=
|alt_id=DOID:0050607;;DOID:4158;;DOID:4390
|alt_id=DOID:0050607;;DOID:4158;;DOID:4390
|disjoint_from=
|comment=OMIM mapping confirmed by DO. [SN].
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3369
|is_a=DOID:1192
|is_obsolete=
|located_in=
|located_in=
|name=peripheral primitive neuroectodermal tumor
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym="Ewing sarcoma" EXACT [];;"Ewing's sarcoma/peripheral primitive neuroectodermal tumor" EXACT [NCI2004_11_17:C27291];;"Ewing's tumor" EXACT [NCI2004_11_17:C4817];;"Ewing's tumor" EXACT [CSP2005:2008-4746];;"Ewings sarcoma" EXACT [];;"Ewings sarcoma-primitive neuroectodermal tumor" EXACT [];;"PNET of Thoracopulmonary Region" EXACT [NCI2004_11_17:C7542]
|union_of=
|xref=MSH:D012512;;NCI:C27291;;NCI:C4817;;OMIM:612219;;SNOMEDCT_2010_1_31:128783001;;SNOMEDCT_2010_1_31:134210007;;SNOMEDCT_2010_1_31:253096008;;SNOMEDCT_2010_1_31:254764001;;SNOMEDCT_2010_1_31:73506006;;SNOMEDCT_2010_1_31:73676002;;SNOMEDCT_2010_1_31:76909002;;UMLS_CUI:C0553580;;UMLS_CUI:C0684337;;UMLS_CUI:C0877849
}}
}}

Latest revision as of 16:50, 12 September 2014

Name:peripheral primitive neuroectodermal tumor
Namespace:FANTOM
Xrefs:
links:

MSH:D012512
NCI:C27291
NCI:C4817
OMIM:612219
SNOMEDCT_2010_1_31:128783001
SNOMEDCT_2010_1_31:134210007
SNOMEDCT_2010_1_31:253096008
SNOMEDCT_2010_1_31:254764001
SNOMEDCT_2010_1_31:73506006
SNOMEDCT_2010_1_31:73676002
SNOMEDCT_2010_1_31:76909002
UMLS_CUI:C0553580
UMLS_CUI:C0684337

UMLS_CUI:C0877849
Synonyms: "Ewing sarcoma" EXACT []
"Ewing's sarcoma/peripheral primitive neuroectodermal tumor" EXACT [NCI2004_11_17:C27291]
"Ewing's tumor" EXACT [NCI2004_11_17:C4817]
"Ewing's tumor" EXACT [CSP2005:2008-4746]
"Ewings sarcoma" EXACT []
"Ewings sarcoma-primitive neuroectodermal tumor" EXACT []
"PNET of Thoracopulmonary Region" EXACT [NCI2004_11_17:C7542]
Comments:OMIM mapping confirmed by DO. [SN].
Alt_id: DOID:0050607
DOID:4158
DOID:4390

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1192(peripheral nervous system neoplasm)



Children


is a:FF:10705-109H3 (Ewing's sarcoma cell line:Hs 863.T)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3369 (peripheral primitive neuroectodermal tumor), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.23e-66FFCP PHASE1:Hg19::chr13:38136724..38136726,+#_ef3167bf83f614449a3356310a23cd17p@chr13:38136724..38136726, +
1.23e-66FFCP PHASE2:Hg19::chr13:38136724..38136726,+#_ef3167bf83f614449a3356310a23cd17p@chr13:38136724..38136726, +
2.42e-50FFCP PHASE1:Hg19::chr5:67750872..67750876,+#_02374c9113e3eb77f3b47bd21f48c0d6p@chr5:67750872..67750876, +
2.42e-50FFCP PHASE2:Hg19::chr5:67750872..67750876,+#_02374c9113e3eb77f3b47bd21f48c0d6p@chr5:67750872..67750876, +
6.58e-50FFCP PHASE1:Hg19::chr8:121013658..121013688,+#_14b7b4fad6048389481ee37d8adbf9aap@chr8:121013658..121013688, +
6.58e-50FFCP PHASE2:Hg19::chr8:121013658..121013688,+#_14b7b4fad6048389481ee37d8adbf9aap@chr8:121013658..121013688, +
9.91e-41FFCP PHASE1:Hg19::chrX:148571964..148571973,-#_2ebc647f983cdc40f1376a8cdd5847cfp42@IDS
9.91e-41FFCP PHASE2:Hg19::chrX:148571964..148571973,-#_2ebc647f983cdc40f1376a8cdd5847cfp42@IDS
1.48e-40FFCP PHASE1:Hg19::chr7:55775905..55775916,-#_2807d347b115816b1f84684e1f236b7bp@chr7:55775905..55775916, -
1.48e-40FFCP PHASE2:Hg19::chr7:55775905..55775916,-#_2807d347b115816b1f84684e1f236b7bp@chr7:55775905..55775916, -
5.05e-34FFCP PHASE1:Hg19::chr4:67298860..67298867,-#_0d9179a9cf2078ee5c02962e28c96331p@chr4:67298860..67298867, -
5.05e-34FFCP PHASE2:Hg19::chr15:68805200..68805208,+#_0d9179a9cf2078ee5c02962e28c96331p@chr15:68805200..68805208, +
5.05e-34FFCP PHASE2:Hg19::chr4:67298860..67298867,-#_0d9179a9cf2078ee5c02962e28c96331p@chr4:67298860..67298867, -
5.05e-34FFCP PHASE1:Hg19::chr15:68805200..68805208,+#_0d9179a9cf2078ee5c02962e28c96331p@chr15:68805200..68805208, +
7.06e-34FFCP PHASE1:Hg19::chr14:80285844..80285848,+#_8ec6a347a923ed9f743829ee86be5b5ep@chr14:80285844..80285848, +
7.06e-34FFCP PHASE2:Hg19::chr14:80285844..80285848,+#_8ec6a347a923ed9f743829ee86be5b5ep@chr14:80285844..80285848, +
7.48e-30FFCP PHASE1:Hg19::chrX:149716271..149716273,+#_c1d285fd1d9e6a0c43fed3971fe0a6dfp@chrX:149716271..149716273, +
7.48e-30FFCP PHASE2:Hg19::chrX:149716271..149716273,+#_c1d285fd1d9e6a0c43fed3971fe0a6dfp@chrX:149716271..149716273, +
1.78e-29FFCP PHASE1:Hg19::chr5:111312488..111312498,-#_7b991a92269fb52264f6b79004ccb497p35@C5orf13
1.78e-29FFCP PHASE2:Hg19::chr5:111312488..111312498,-#_7b991a92269fb52264f6b79004ccb497p35@C5orf13
1.78e-29FFCP PHASE1:Hg19::chr8:70562243..70562247,+#_7b991a92269fb52264f6b79004ccb497p@chr8:70562243..70562247, +
1.78e-29FFCP PHASE2:Hg19::chr8:70562243..70562247,+#_7b991a92269fb52264f6b79004ccb497p@chr8:70562243..70562247, +
2.37e-29FFCP PHASE1:Hg19::chr6:117923520..117923529,-#_343c9b017b7bb8f9823ab656a710ee47p8@GOPC
2.37e-29FFCP PHASE2:Hg19::chr6:117923520..117923529,-#_343c9b017b7bb8f9823ab656a710ee47p8@GOPC
4.61e-26FFCP PHASE1:Hg19::chr6:35219318..35219336,+#_9666f6fc6149fe11cb840598799fe8fep3@AK123742
4.61e-26FFCP PHASE1:Hg19::chr13:91147974..91147980,+#_9666f6fc6149fe11cb840598799fe8fep@chr13:91147974..91147980, +
4.61e-26FFCP PHASE2:Hg19::chr13:91147974..91147980,+#_9666f6fc6149fe11cb840598799fe8fep@chr13:91147974..91147980, +
4.61e-26FFCP PHASE2:Hg19::chr6:35219318..35219336,+#_9666f6fc6149fe11cb840598799fe8fep3@AK123742
7.62e-26FFCP PHASE2:Hg19::chr9:100561372..100561378,-#_c2b27015e54be5704051ceef2f815bd9p@chr9:100561372..100561378, -
7.62e-26FFCP PHASE1:Hg19::chr9:100561372..100561378,-#_c2b27015e54be5704051ceef2f815bd9p@chr9:100561372..100561378, -
9.79e-26FFCP PHASE1:Hg19::chrX:3438505..3438546,-#_dde67603636e2953a3e03952a59ff164p@chrX:3438505..3438546, -
9.79e-26FFCP PHASE2:Hg19::chrX:3438505..3438546,-#_dde67603636e2953a3e03952a59ff164p@chrX:3438505..3438546, -
1.34e-23FFCP PHASE2:Hg19::chr13:76258701..76258705,+#_799a604cd5b9bbb554b2edfc8e42dcecp@chr13:76258701..76258705, +
1.34e-23FFCP PHASE1:Hg19::chr13:76258701..76258705,+#_799a604cd5b9bbb554b2edfc8e42dcecp@chr13:76258701..76258705, +
1.67e-23FFCP PHASE1:Hg19::chr12:54379066..54379073,+#_b8178acc5229f33d95c6109118197837p11@HOXC10
1.67e-23FFCP PHASE2:Hg19::chr12:54379066..54379073,+#_b8178acc5229f33d95c6109118197837p11@HOXC10
2.1e-23FFCP PHASE1:Hg19::chr3:157161308..157161324,+#_d20b204a5acaa530a75c522f9a1584f6p@chr3:157161308..157161324, +
2.1e-23FFCP PHASE2:Hg19::chr3:157161308..157161324,+#_d20b204a5acaa530a75c522f9a1584f6p@chr3:157161308..157161324, +
2.62e-23FFCP PHASE2:Hg19::chrX:48327999..48328010,-#_2a09768e5372930aae8012a172cf160ep24@SLC38A5
2.62e-23FFCP PHASE2:Hg19::chr17:48262286..48262289,-#_2a09768e5372930aae8012a172cf160ep@chr17:48262286..48262289, -
2.62e-23FFCP PHASE1:Hg19::chrX:606157..606161,+#_2a09768e5372930aae8012a172cf160ep@chrX:606157..606161, +
2.62e-23FFCP PHASE2:Hg19::chrX:606157..606161,+#_2a09768e5372930aae8012a172cf160ep@chrX:606157..606161, +
2.62e-23FFCP PHASE1:Hg19::chr17:48262286..48262289,-#_2a09768e5372930aae8012a172cf160ep@chr17:48262286..48262289, -
2.62e-23FFCP PHASE1:Hg19::chrX:48327999..48328010,-#_2a09768e5372930aae8012a172cf160ep24@SLC38A5
3.28e-23FFCP PHASE1:Hg19::chr1:15632231..15632234,+#_242f4be38578755bedfba6db0b8f3ff7p9@FHAD1
3.28e-23FFCP PHASE2:Hg19::chr1:15632231..15632234,+#_242f4be38578755bedfba6db0b8f3ff7p9@FHAD1
5.13e-23FFCP PHASE2:Hg19::chr4:112437339..112437350,+#_dcaba3223040871a9edf0f8306331cc3p@chr4:112437339..112437350, +
5.13e-23FFCP PHASE1:Hg19::chr4:112437339..112437350,+#_dcaba3223040871a9edf0f8306331cc3p@chr4:112437339..112437350, +
1.53e-21FFCP PHASE1:Hg19::chr6:35218435..35218446,+#_b3561044d9fd13589c8c3c20a8d63b68p4@AK123742
1.53e-21FFCP PHASE2:Hg19::chr6:35218435..35218446,+#_b3561044d9fd13589c8c3c20a8d63b68p4@AK123742
2.82e-21FFCP PHASE1:Hg19::chrX:46618641..46618650,-#_45461516d807b1918ce1b73d590dcd94p4@SLC9A7
2.82e-21FFCP PHASE2:Hg19::chrX:46618641..46618650,-#_45461516d807b1918ce1b73d590dcd94p4@SLC9A7
3.45e-21FFCP PHASE2:Hg19::chr8:25876442..25876447,-#_c7aed6b164393c6b60e838fd23069b27p@chr8:25876442..25876447, -
3.45e-21FFCP PHASE1:Hg19::chr15:33023519..33023526,+#_c7aed6b164393c6b60e838fd23069b27p@chr15:33023519..33023526, +
3.45e-21FFCP PHASE2:Hg19::chr15:33023519..33023526,+#_c7aed6b164393c6b60e838fd23069b27p@chr15:33023519..33023526, +
3.45e-21FFCP PHASE1:Hg19::chr8:25876442..25876447,-#_c7aed6b164393c6b60e838fd23069b27p@chr8:25876442..25876447, -
4.22e-21FFCP PHASE2:Hg19::chr4:39501682..39501693,-#_93a18ff2b5b401c1f82aa9596bd5ac2fp24@UGDH
4.22e-21FFCP PHASE1:Hg19::chr6:169582924..169582941,-#_93a18ff2b5b401c1f82aa9596bd5ac2fp1@uc011egv.1
4.22e-21FFCP PHASE1:Hg19::chr10:52750709..52750716,+#_93a18ff2b5b401c1f82aa9596bd5ac2fp15@PRKG1
4.22e-21FFCP PHASE2:Hg19::chr10:52750709..52750716,+#_93a18ff2b5b401c1f82aa9596bd5ac2fp15@PRKG1
4.22e-21FFCP PHASE1:Hg19::chr4:39501682..39501693,-#_93a18ff2b5b401c1f82aa9596bd5ac2fp24@UGDH
4.22e-21FFCP PHASE2:Hg19::chr6:169582924..169582941,-#_93a18ff2b5b401c1f82aa9596bd5ac2fp1@uc011egv.1
7.72e-21FFCP PHASE2:Hg19::chr15:81103081..81103092,+#_bf9af2c5207102daa13933c229905c83p@chr15:81103081..81103092, +
7.72e-21FFCP PHASE1:Hg19::chr15:81103081..81103092,+#_bf9af2c5207102daa13933c229905c83p@chr15:81103081..81103092, +
1.3e-19FFCP PHASE1:Hg19::chr2:134432699..134432711,-#_952d5bb7e6c7c1eb6aa648960637e34fp@chr2:134432699..134432711, -
1.3e-19FFCP PHASE2:Hg19::chr2:134432699..134432711,-#_952d5bb7e6c7c1eb6aa648960637e34fp@chr2:134432699..134432711, -
1.88e-19FFCP PHASE2:Hg19::chr16:69958959..69958971,+#_2ecaae81283aeba26893811feb7cdf7ep6@WWP2
1.88e-19FFCP PHASE1:Hg19::chr16:69958959..69958971,+#_2ecaae81283aeba26893811feb7cdf7ep6@WWP2
2.71e-19FFCP PHASE1:Hg19::chr5:83670631..83670634,+#_f7343036912c0ba7b4dc5205123fb7eep@chr5:83670631..83670634, +
2.71e-19FFCP PHASE2:Hg19::chr5:83670631..83670634,+#_f7343036912c0ba7b4dc5205123fb7eep@chr5:83670631..83670634, +
3.25e-19FFCP PHASE1:Hg19::chr4:112437251..112437278,+#_036000d35b42a89cd9ed1a3c48913463p@chr4:112437251..112437278, +
3.25e-19FFCP PHASE2:Hg19::chr4:112437251..112437278,+#_036000d35b42a89cd9ed1a3c48913463p@chr4:112437251..112437278, +
3.16e-18FFCP PHASE1:Hg19::chr13:38145589..38145600,-#_ef17fde8e60f6a5878ee31bb68391617p12@POSTN
3.16e-18FFCP PHASE1:Hg19::chr13:38148231..38148243,-#_ef17fde8e60f6a5878ee31bb68391617p@chr13:38148231..38148243, -
3.16e-18FFCP PHASE2:Hg19::chr13:38145589..38145600,-#_ef17fde8e60f6a5878ee31bb68391617p12@POSTN
3.16e-18FFCP PHASE2:Hg19::chr13:38148231..38148243,-#_ef17fde8e60f6a5878ee31bb68391617p@chr13:38148231..38148243, -
4.44e-18FFCP PHASE2:Hg19::chrX:3241475..3241523,+#_2672f1803e9e8c1c63d54d4e9abade64p@chrX:3241475..3241523, +
4.44e-18FFCP PHASE1:Hg19::chr2:56098190..56098201,+#_2672f1803e9e8c1c63d54d4e9abade64p@chr2:56098190..56098201, +
4.44e-18FFCP PHASE1:Hg19::chr18:74817666..74817686,-#_2672f1803e9e8c1c63d54d4e9abade64p2@AB463902, p2@CU688026
4.44e-18FFCP PHASE2:Hg19::chr4:66460864..66460869,-#_2672f1803e9e8c1c63d54d4e9abade64p@chr4:66460864..66460869, -
4.44e-18FFCP PHASE2:Hg19::chr16:31076273..31076288,-#_2672f1803e9e8c1c63d54d4e9abade64p11@ZNF668
4.44e-18FFCP PHASE2:Hg19::chr2:56098190..56098201,+#_2672f1803e9e8c1c63d54d4e9abade64p@chr2:56098190..56098201, +
4.44e-18FFCP PHASE2:Hg19::chr18:74817666..74817686,-#_2672f1803e9e8c1c63d54d4e9abade64p2@AB463902, p2@CU688026
4.44e-18FFCP PHASE1:Hg19::chrX:3241475..3241523,+#_2672f1803e9e8c1c63d54d4e9abade64p@chrX:3241475..3241523, +
4.44e-18FFCP PHASE1:Hg19::chr4:66460864..66460869,-#_2672f1803e9e8c1c63d54d4e9abade64p@chr4:66460864..66460869, -
4.44e-18FFCP PHASE1:Hg19::chr16:31076273..31076288,-#_2672f1803e9e8c1c63d54d4e9abade64p11@ZNF668
5.26e-18FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_05196677d4c3f0f5396ee63ca24ac51fp19@KIAA1199
5.26e-18FFCP PHASE1:Hg19::chr5:55290880..55290885,-#_05196677d4c3f0f5396ee63ca24ac51fp15@IL6ST
5.26e-18FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_05196677d4c3f0f5396ee63ca24ac51fp19@KIAA1199
5.26e-18FFCP PHASE2:Hg19::chr5:55290880..55290885,-#_05196677d4c3f0f5396ee63ca24ac51fp15@IL6ST
6.23e-18FFCP PHASE1:Hg19::chr2:42052605..42052611,-#_e170973c5adc52933f6ddb69cdd7df69p@chr2:42052605..42052611, -
6.23e-18FFCP PHASE2:Hg19::chr2:42052605..42052611,-#_e170973c5adc52933f6ddb69cdd7df69p@chr2:42052605..42052611, -
1.7e-17FFCP PHASE1:Hg19::chr4:129491457..129491467,-#_41529e3e2587682e9679aa5a3bb2679ep2@uc003igi.1
1.7e-17FFCP PHASE2:Hg19::chr4:129491457..129491467,-#_41529e3e2587682e9679aa5a3bb2679ep2@uc003igi.1
6.47e-17FFCP PHASE2:Hg19::chrX:84343350..84343354,+#_cdad99239690801fdf04e15b094debc2p@chrX:84343350..84343354, +
6.47e-17FFCP PHASE1:Hg19::chrX:84343350..84343354,+#_cdad99239690801fdf04e15b094debc2p@chrX:84343350..84343354, +
7.57e-17FFCP PHASE1:Hg19::chr2:134399236..134399260,-#_e3613c62244439c4f4471d810ce0bf0bp@chr2:134399236..134399260, -
7.57e-17FFCP PHASE2:Hg19::chr2:134399236..134399260,-#_e3613c62244439c4f4471d810ce0bf0bp@chr2:134399236..134399260, -
8.86e-17FFCP PHASE1:Hg19::chr14:79746108..79746120,+#_8be94cc7c992e4ba51188cc7353dada2p10@NRXN3
8.86e-17FFCP PHASE2:Hg19::chr14:79746108..79746120,+#_8be94cc7c992e4ba51188cc7353dada2p10@NRXN3

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=DOID:3369&oldid=3275681"