FFCP PHASE1:Hg19::chr12:57624085..57624106,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z9F1,B4DJQ3,P34897,Q5BJF5 | |UniProt=B7Z9F1,B4DJQ3,P34897,Q5BJF5 | ||
|association_with_transcript=-4bp_to_ENST00000553474,NM_001166359,NR_029415_5end | |association_with_transcript=-4bp_to_ENST00000553474,NM_001166359,NR_029415_5end | ||
|cluster_id=chr12:57624085..57624106,+ | |||
|coexpression_cluster_id=C3305 | |||
|description=CAGE_peak_7_at_SHMT2_5end | |description=CAGE_peak_7_at_SHMT2_5end | ||
|id=chr12:57624085..57624106,+ | |id=chr12:57624085..57624106,+ | ||
|ontology_enrichment_celltype=CL:0000548!1.77e-17!679;CL:0000004!1.77e-17!679;CL:0000255!1.77e-17!679;CL:0000012!6.50e-17!682;CL:0000055!5.14e-14!180;CL:0000144!9.02e-11!625;CL:0000003!4.56e-10!722;CL:0000057!1.21e-08!75;CL:0002321!1.89e-07!248;CL:0000220!5.53e-07!246;CL:0000066!8.03e-07!254 | |ontology_enrichment_celltype=CL:0000548!1.77e-17!679;CL:0000004!1.77e-17!679;CL:0000255!1.77e-17!679;CL:0000012!6.50e-17!682;CL:0000055!5.14e-14!180;CL:0000144!9.02e-11!625;CL:0000003!4.56e-10!722;CL:0000057!1.21e-08!75;CL:0002321!1.89e-07!248;CL:0000220!5.53e-07!246;CL:0000066!8.03e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0000039;3.92e-10;7!CL:0000586;3.92e-10;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.03e-10,7;CL:0000586,2.03e-10,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!7.29e-15!239;DOID:162!8.29e-15!235;DOID:0050687!1.08e-12!143;DOID:305!4.03e-07!106;DOID:3095!6.40e-07!22;DOID:2994!6.40e-07!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,5.85e-08,143;DOID:14566,7.74e-08,239;DOID:162,2.53e-07,235 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.908391896352783,0.642301571672949,0.845726424575827,0,0.446961094427288,0,0,1.26343974685366,0.783556884599516,0.245733936501509,1.39560233594486,0.436882744260345,0.263766978228454,0,0,0,0,0.730310090387373,0,0,0,2.19418305034661,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0.236132343941038,0,0,0,0,0.30120591877825,0.369754010166788,0.154934401160603,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0.619412741790207,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17366355134002,1.44575660953827,0.50133791063589,1.01392563272577,0.795285947051099,0.486634870302636,0.0945348171640679,0.221729397462564,0.263504357079378,0,0,0,0,0,0,0,0,0,0.993812036833525,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0.33472061276467,0,0,0,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,1.49091585508596,1.2663051166458,0.264818361626438,2.0078563452417,0,0.560677600142307,3.20246987189115,1.2333377420858,0,3.77189881795127,0.163461903113459,2.11900398702904,1.15235184896,21.0889288650417,0,0.570471821544449,0,0.469737994575059,0.809364721840658,0,0,0.245668634623536,1.44656093646072,0,2.96720315134268,1.82032272387605,6.46756327634615,0.168336113954066,0.125118519871964,0,0.877955241761676,0.30648779579902,0.150238058906597,0.340296549480063,0.358779271377724,0.85422955527427,0.635795703478686,0.300091096084402,0.206105058476878,0,1.11670113798954,0.168776332241266,0.68205903612839,0,0.460249493211497,0.484938170456436,0.355009592516614,0.403008392910561,0.508681776931463,0,0,0,1.46368447355514,1.32529768321485,0.69716365721711,1.96956004529204,1.00928340350251,0,0,0,0,0,0,0,0,0,0.441175890929576,0,0,0.269662616320329,0.196221465125346,0,0,0,0.4115740113314,0,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0.857839051492628,0,5.62008766288098,0.100528972411631,0,28.0195142566879,1.03993478527958,0,0.115930404975077,1.87853910777315,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.53735113621709,1.45316969256981,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,1.23344192779897,1.30788020649984,0.2933531432838,0.517086863031111,3.57656445851882,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,1.42977993658148,3.25572963234866,0,0,1.77695974371273,0,0,0,0,0,0,0,2.15662369942424,4.59447743336456,0,0.144781306667579,0.205476322550383,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,4.6115054028955,0.207970861530807,1.07057393278297,1.10391690523754,0.35142424497814,0.902838299183157,2.27407504055985,2.0694614258501,0,0.368738337083406,0.0868836144680828,1.17480694477644,1.02943027143257,0,0,0,0.606255142892519,0,2.72151263996712,0.744323423456331,0.306923946576125,0.280660094433074,1.79394808957981,2.04682899626681,0.804269605718038,0,0,0.355123450626254,0.246381468041427,0,0.116210378459959,1.20859449591622,0,0,1.49258782613989,1.45672934405374,0.917870904715969,2.70719767744447,0.308061348417659,2.35304930753057,0,0,0,0.170093705276516,0,0,0,0.501689773854853,0.254876273045038,2.49322802678617,0.447749509444357,0,0,0,0,5.20605431462885,0,0,0,0,0,0,5.22021878777459,0,0.15350367472613,0.137836572484531,0.751941714077915,0,0,2.31483292681517,0.661139661443912,0.576570202095319,0,0,0.929691098594572,0.31481234683064,0,0.308033580176089,0,0,0.74129687641568,1.43124886741991,0.372158369359667,0,0.571890581771475,0.255897791311334,3.42351190427136,0.318203247925937,0,0.179872457583315,0,0.235624804691373,0.606547444719948,0,0.421258456238981,0.975267478179181,0.487426979262569,0,0.545999645631943,1.83827061539827,0,0,0,0.438450885253763,0.578775534266688,0,0.202910376962704,0.30982349809975,0.281695602532241,0.286822704408103,1.27723753317057,1.07001315444375,0.709522128141196,0.211107635297664,0,0,12.2477152085744,1.63577591633371,0,7.62236894029258,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92495971052672,0,0.185803175125719,0,0.995985806877798,0,0,0,7.83192256078367,0,0,0,0,0,0,0,0,0,0,0,0,0.333698283423817,0,0.278406173895242,3.69262196843137,0.270455678475983,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,4.22973079087042,0.329607748453519,0,0.19924798825107,0,0.251932747854276,0.102268682502155,0.492339221844278,0,0.179736702294654,0.358042349351218,0.511572370226872,0,0,0,0,0,0,0,0.174919999992391,0,0.568967241427498,0,0,1.03423011972439,0,6.07687482266523,0,0,0,0,0,0,0.653630781113941,0.139423744278603,0,1.13942055847001,1.38338342632836,2.78248697670294,3.91130538919229,0,0.0915975934018623,0,1.02193298195737,0,0.166211681900156,0,0.19606253431774,0.335643173951685,0,0,0.210998064528027,0.163232808159148,0.141353071433941,1.08194319871046,0,0,0,3.26173241548684,1.60633120630454,1.04421949505455,0,0,0,0.91227394607833,0.19566461893209,2.42780379534093,0,0,0,0.063186579628488,21.4962489762724,0.311064574191741,0.664653872707185,0.330991955875499,1.56966459203613,0,4.26914319044689,1.52542140314453,0,0.0979923974143777,0,0,0.51595809741485,0.0967563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| ||
|short_description=p7@SHMT2 | |short_description=p7@SHMT2 | ||
}} | }} |
Latest revision as of 13:38, 19 September 2015
Short description: | p7@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SHMT2_5end |
Coexpression cluster: | C3305_mesothelioma_Keratocytes_Fibroblast_hepatoma_Trabecular_acute_gastrointestinal |
Association with transcript: | -4bp_to_ENST00000553474, NM_001166359, NR_029415_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | B7Z9F1B4DJQ3P34897Q5BJF5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.03e-10 | 7 |
germ cell | 2.03e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 5.85e-08 | 143 |
disease of cellular proliferation | 7.74e-08 | 239 |
cancer | 2.53e-07 | 235 |