DOID:2994: Difference between revisions
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|name=germ cell cancer | |name=germ cell cancer | ||
|namespace=disease_ontology | |namespace=disease_ontology | ||
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from germ cells." [url:http | |def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from germ cells." [url:http://en.wikipedia.org/wiki/Germ_cell_tumor] | ||
|xref=MSH:D009373;;NCI:C3708;;SNOMEDCT_2010_1_31:115233005;;SNOMEDCT_2010_1_31:189839002;;SNOMEDCT_2010_1_31:189854008;;SNOMEDCT_2010_1_31:28307001;;SNOMEDCT_2010_1_31:302853003;;SNOMEDCT_2010_1_31:402878003;;UMLS_CUI:C0205851 | |xref=MSH:D009373;;NCI:C3708;;SNOMEDCT_2010_1_31:115233005;;SNOMEDCT_2010_1_31:189839002;;SNOMEDCT_2010_1_31:189854008;;SNOMEDCT_2010_1_31:28307001;;SNOMEDCT_2010_1_31:302853003;;SNOMEDCT_2010_1_31:402878003;;UMLS_CUI:C0205851 | ||
|is_a=DOID:0050687 | |is_a=DOID:0050687 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 16:32, 26 June 2012
| Name: | germ cell cancer | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Definition: | "A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from germ cells." [url:http://en.wikipedia.org/wiki/Germ_cell_tumor] | ||
| Xrefs: |
| ||
| Synonyms: |
"germ cell neoplasm" RELATED [CSP2005:2016-0850] "germ cell tumour" RELATED [SNOMEDCT_2005_07_31:28307001] "malignant tumor of the germ cell" EXACT [NCI2004_11_17:C4925] | ||
| Alt_id: | DOID:2157 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0050687(cell type cancer) |
|---|
Children
| is a: | DOID:3095 (germ cell and embryonal cancer),DOID:688 (embryonal cancer) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10458-106G8
- 10460-106H1
- 10461-106H2
- 10480-107A3
- 10507-107D3
- 10508-107D4 (neuroblastoma cell line:CHP-134)
- 10538-107G7
- 10539-107G8 (neuroblastoma cell line:NB-1)
- 10554-107I5
... further results Mouse (Mus musculus)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10458-106G8
- 10460-106H1
- 10461-106H2
- 10480-107A3
- 10507-107D3
- 10508-107D4 (neuroblastoma cell line:CHP-134)
- 10538-107G7
- 10539-107G8 (neuroblastoma cell line:NB-1)
- 10554-107I5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:2994 (germ cell cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.32e-71 | FFCP PHASE1:Hg19::chr2:218875465..218875482,-#_792ec969c8a43ff610526b83b8e825a5 | p@chr2:218875465..218875482, - |
| 2.32e-71 | FFCP PHASE2:Hg19::chr2:218875465..218875482,-#_792ec969c8a43ff610526b83b8e825a5 | p@chr2:218875465..218875482, - |
| 7.16e-55 | FFCP PHASE2:Hg19::chr2:218875447..218875463,-#_2959a6f8aeeccaeafe9b4cf4acc7e188 | p@chr2:218875447..218875463, - |
| 7.16e-55 | FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_2959a6f8aeeccaeafe9b4cf4acc7e188 | p3@DPPA3 |
| 7.16e-55 | FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_2959a6f8aeeccaeafe9b4cf4acc7e188 | p3@DPPA3 |
| 7.16e-55 | FFCP PHASE1:Hg19::chr2:218875447..218875463,-#_2959a6f8aeeccaeafe9b4cf4acc7e188 | p@chr2:218875447..218875463, - |
| 6.24e-54 | FFCP PHASE1:Hg19::chr8:12808720..12808732,+#_9692c0432311da19c08619d9e1b288a1 | p19@KIAA1456 |
| 6.24e-54 | FFCP PHASE2:Hg19::chr8:12808720..12808732,+#_9692c0432311da19c08619d9e1b288a1 | p19@KIAA1456 |
| 6.24e-54 | FFCP PHASE1:Hg19::chr13:31590717..31590730,-#_9692c0432311da19c08619d9e1b288a1 | p@chr13:31590717..31590730, - |
| 6.24e-54 | FFCP PHASE2:Hg19::chr13:31590717..31590730,-#_9692c0432311da19c08619d9e1b288a1 | p@chr13:31590717..31590730, - |
| 5.21e-52 | FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_541e635aedb736b766108c8660c9b362 | p2@DPPA3 |
| 5.21e-52 | FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_541e635aedb736b766108c8660c9b362 | p2@DPPA3 |
| 2.88e-46 | FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_2680b343c73462ab5705baeeb80b482f | p3@TRIM60 |
| 2.88e-46 | FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_2680b343c73462ab5705baeeb80b482f | p3@TRIM60 |
| 3.12e-46 | FFCP PHASE1:Hg19::chr3:5932149..5932178,+#_81899c8daab06eed77fbb537936164e4 | p@chr3:5932149..5932178, + |
| 3.12e-46 | FFCP PHASE2:Hg19::chr3:5932149..5932178,+#_81899c8daab06eed77fbb537936164e4 | p@chr3:5932149..5932178, + |
| 3.12e-46 | FFCP PHASE1:Hg19::chrX:51361761..51361770,-#_81899c8daab06eed77fbb537936164e4 | p2@ENST00000417339 |
| 3.12e-46 | FFCP PHASE2:Hg19::chrX:51361761..51361770,-#_81899c8daab06eed77fbb537936164e4 | p2@ENST00000417339 |
| 3.37e-46 | FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_44da063dba111912358520ea64824898 | p4@DNMT3L |
| 3.37e-46 | FFCP PHASE1:Hg19::chr20:4228201..4228214,+#_44da063dba111912358520ea64824898 | p@chr20:4228201..4228214, + |
| 3.37e-46 | FFCP PHASE2:Hg19::chr20:4228201..4228214,+#_44da063dba111912358520ea64824898 | p@chr20:4228201..4228214, + |
| 3.37e-46 | FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_44da063dba111912358520ea64824898 | p4@DNMT3L |
| 3.65e-46 | FFCP PHASE2:Hg19::chr20:4228155..4228166,+#_f7c06632d1e550677ca3f5ad295926b9 | p@chr20:4228155..4228166, + |
| 3.65e-46 | FFCP PHASE1:Hg19::chr20:4228155..4228166,+#_f7c06632d1e550677ca3f5ad295926b9 | p@chr20:4228155..4228166, + |
| 3.65e-46 | FFCP PHASE2:Hg19::chr9:15883095..15883109,+#_f7c06632d1e550677ca3f5ad295926b9 | p@chr9:15883095..15883109, + |
| 3.65e-46 | FFCP PHASE1:Hg19::chr9:15883095..15883109,+#_f7c06632d1e550677ca3f5ad295926b9 | p@chr9:15883095..15883109, + |
| 3.95e-46 | FFCP PHASE2:Hg19::chr9:15883050..15883085,+#_7b76f5a8a669bf717d9c453f0e6c2302 | p@chr9:15883050..15883085, + |
| 3.95e-46 | FFCP PHASE1:Hg19::chr9:15883050..15883085,+#_7b76f5a8a669bf717d9c453f0e6c2302 | p@chr9:15883050..15883085, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr3:8407443..8407453,-#_b713067e155cba3f71eed9e30ce9be3e | p@chr3:8407443..8407453, - |
| 3.09e-45 | FFCP PHASE2:Hg19::chr1:155804376..155804383,-#_b713067e155cba3f71eed9e30ce9be3e | p@chr1:155804376..155804383, - |
| 3.09e-45 | FFCP PHASE1:Hg19::chr5:133764015..133764029,+#_b713067e155cba3f71eed9e30ce9be3e | p@chr5:133764015..133764029, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr11:83436107..83436115,-#_b713067e155cba3f71eed9e30ce9be3e | p46@DLG2 |
| 3.09e-45 | FFCP PHASE1:Hg19::chr11:18665025..18665064,+#_b713067e155cba3f71eed9e30ce9be3e | p@chr11:18665025..18665064, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr1:155804376..155804383,-#_b713067e155cba3f71eed9e30ce9be3e | p@chr1:155804376..155804383, - |
| 3.09e-45 | FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_b713067e155cba3f71eed9e30ce9be3e | p2@A2ML1-AS1 |
| 3.09e-45 | FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_b713067e155cba3f71eed9e30ce9be3e | p@chr5:133764015..133764029, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_b713067e155cba3f71eed9e30ce9be3e | p@chr1:27385778..27385789, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_b713067e155cba3f71eed9e30ce9be3e | p2@A2ML1-AS1 |
| 3.09e-45 | FFCP PHASE2:Hg19::chr1:27385778..27385789,+#_b713067e155cba3f71eed9e30ce9be3e | p@chr1:27385778..27385789, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr11:18665025..18665064,+#_b713067e155cba3f71eed9e30ce9be3e | p@chr11:18665025..18665064, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr2:218876066..218876078,-#_b713067e155cba3f71eed9e30ce9be3e | p@chr2:218876066..218876078, - |
| 3.09e-45 | FFCP PHASE2:Hg19::chr2:218876066..218876078,-#_b713067e155cba3f71eed9e30ce9be3e | p@chr2:218876066..218876078, - |
| 3.09e-45 | FFCP PHASE1:Hg19::chr11:83436107..83436115,-#_b713067e155cba3f71eed9e30ce9be3e | p46@DLG2 |
| 3.09e-45 | FFCP PHASE1:Hg19::chr17:31618260..31618271,+#_b713067e155cba3f71eed9e30ce9be3e | p@chr17:31618260..31618271, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr19:50016671..50016675,+#_b713067e155cba3f71eed9e30ce9be3e | p22@FCGRT |
| 3.09e-45 | FFCP PHASE2:Hg19::chr17:31618260..31618271,+#_b713067e155cba3f71eed9e30ce9be3e | p@chr17:31618260..31618271, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr3:8407443..8407453,-#_b713067e155cba3f71eed9e30ce9be3e | p@chr3:8407443..8407453, - |
| 3.09e-45 | FFCP PHASE1:Hg19::chr19:50016671..50016675,+#_b713067e155cba3f71eed9e30ce9be3e | p22@FCGRT |
| 6.61e-44 | FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_67bdca43f8d7e9ac906eefdbfaaef41e | p2@DNMT3L |
| 6.61e-44 | FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_67bdca43f8d7e9ac906eefdbfaaef41e | p2@DNMT3L |
| 1.63e-40 | FFCP PHASE1:Hg19::chr1:60314016..60314043,+#_4fa8d68c26cb7cbae0d0530fd15ca847 | p@chr1:60314016..60314043, + |
| 1.63e-40 | FFCP PHASE1:Hg19::chr8:12808701..12808712,+#_4fa8d68c26cb7cbae0d0530fd15ca847 | p16@KIAA1456 |
| 1.63e-40 | FFCP PHASE2:Hg19::chr1:60314016..60314043,+#_4fa8d68c26cb7cbae0d0530fd15ca847 | p@chr1:60314016..60314043, + |
| 1.63e-40 | FFCP PHASE2:Hg19::chr8:12808701..12808712,+#_4fa8d68c26cb7cbae0d0530fd15ca847 | p16@KIAA1456 |
| 1.87e-40 | FFCP PHASE2:Hg19::chr2:230804505..230804520,-#_3da10ef2a5d5319e8e00f0ec1bb1b82b | p@chr2:230804505..230804520, - |
| 1.87e-40 | FFCP PHASE1:Hg19::chr2:230804505..230804520,-#_3da10ef2a5d5319e8e00f0ec1bb1b82b | p@chr2:230804505..230804520, - |
| 5.93e-40 | FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_929012551c9d721f1ad5d1959766c45f | p1@DNMT3L |
| 5.93e-40 | FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_929012551c9d721f1ad5d1959766c45f | p1@DNMT3L |
| 7.05e-38 | FFCP PHASE2:Hg19::chr2:207068264..207068271,+#_92fadbff56c478e71c22be51ea026ead | p@chr2:207068264..207068271, + |
| 7.05e-38 | FFCP PHASE1:Hg19::chr2:207068264..207068271,+#_92fadbff56c478e71c22be51ea026ead | p@chr2:207068264..207068271, + |
| 8.52e-38 | FFCP PHASE1:Hg19::chr5:36596685..36596706,+#_a9c0299d871d334c4667d2db727eb159 | p@chr5:36596685..36596706, + |
| 8.52e-38 | FFCP PHASE2:Hg19::chr12:4128088..4128115,+#_a9c0299d871d334c4667d2db727eb159 | p@chr12:4128088..4128115, + |
| 8.52e-38 | FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_a9c0299d871d334c4667d2db727eb159 | p1@A2ML1-AS1 |
| 8.52e-38 | FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_a9c0299d871d334c4667d2db727eb159 | p1@A2ML1-AS1 |
| 8.52e-38 | FFCP PHASE1:Hg19::chr12:4128088..4128115,+#_a9c0299d871d334c4667d2db727eb159 | p@chr12:4128088..4128115, + |
| 8.52e-38 | FFCP PHASE2:Hg19::chrX:19141065..19141080,-#_a9c0299d871d334c4667d2db727eb159 | p3@GPR64 |
| 8.52e-38 | FFCP PHASE1:Hg19::chrX:19141065..19141080,-#_a9c0299d871d334c4667d2db727eb159 | p3@GPR64 |
| 8.52e-38 | FFCP PHASE2:Hg19::chr5:36596685..36596706,+#_a9c0299d871d334c4667d2db727eb159 | p@chr5:36596685..36596706, + |
| 9.2e-38 | FFCP PHASE2:Hg19::chr6:123318989..123318999,+#_7857357ea5ff6b71da19ea1abadf0835 | p@chr6:123318989..123318999, + |
| 9.2e-38 | FFCP PHASE2:Hg19::chr8:27046735..27046767,-#_7857357ea5ff6b71da19ea1abadf0835 | p@chr8:27046735..27046767, - |
| 9.2e-38 | FFCP PHASE1:Hg19::chr8:27046735..27046767,-#_7857357ea5ff6b71da19ea1abadf0835 | p@chr8:27046735..27046767, - |
| 9.2e-38 | FFCP PHASE1:Hg19::chr2:216410925..216410936,+#_7857357ea5ff6b71da19ea1abadf0835 | p1@ENST00000417485 |
| 9.2e-38 | FFCP PHASE2:Hg19::chr2:216410925..216410936,+#_7857357ea5ff6b71da19ea1abadf0835 | p1@ENST00000417485 |
| 9.2e-38 | FFCP PHASE2:Hg19::chr19:49714057..49714062,+#_7857357ea5ff6b71da19ea1abadf0835 | p@chr19:49714057..49714062, + |
| 9.2e-38 | FFCP PHASE1:Hg19::chr19:49714057..49714062,+#_7857357ea5ff6b71da19ea1abadf0835 | p@chr19:49714057..49714062, + |
| 9.2e-38 | FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_7857357ea5ff6b71da19ea1abadf0835 | p1@TRIM60 |
| 9.2e-38 | FFCP PHASE1:Hg19::chr6:123318989..123318999,+#_7857357ea5ff6b71da19ea1abadf0835 | p@chr6:123318989..123318999, + |
| 9.2e-38 | FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_7857357ea5ff6b71da19ea1abadf0835 | p1@TRIM60 |
| 9.92e-38 | FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_341ff79c9a6fa9010ceda41917ac1d5c | p2@TRIM60 |
| 9.92e-38 | FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_341ff79c9a6fa9010ceda41917ac1d5c | p2@TRIM60 |
| 1.07e-37 | FFCP PHASE2:Hg19::chr9:15883133..15883144,+#_53777f85ba718085ecc504f734d3ebcf | p@chr9:15883133..15883144, + |
| 1.07e-37 | FFCP PHASE1:Hg19::chr9:15883133..15883144,+#_53777f85ba718085ecc504f734d3ebcf | p@chr9:15883133..15883144, + |
| 1.07e-37 | FFCP PHASE2:Hg19::chr3:99982282..99982305,+#_53777f85ba718085ecc504f734d3ebcf | p@chr3:99982282..99982305, + |
| 1.07e-37 | FFCP PHASE1:Hg19::chr3:99982282..99982305,+#_53777f85ba718085ecc504f734d3ebcf | p@chr3:99982282..99982305, + |
| 1.07e-37 | FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_53777f85ba718085ecc504f734d3ebcf | p@chr3:9895464..9895477, - |
| 1.07e-37 | FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_53777f85ba718085ecc504f734d3ebcf | p@chr3:9895464..9895477, - |
| 1.16e-37 | FFCP PHASE2:Hg19::chr4:8068231..8068247,+#_445f612bdbb5112306a96585b5d72d23 | p1@ENST00000510640 |
| 1.16e-37 | FFCP PHASE1:Hg19::chr4:8068231..8068247,+#_445f612bdbb5112306a96585b5d72d23 | p1@ENST00000510640 |
| 1.49e-36 | FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_9748383dc5f40129681cc6815b8cda59 | p11@PPM1N |
| 1.49e-36 | FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_9748383dc5f40129681cc6815b8cda59 | p@chr2:65786044..65786055, + |
| 1.49e-36 | FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_9748383dc5f40129681cc6815b8cda59 | p@chr15:33905298..33905312, + |
| 1.49e-36 | FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_9748383dc5f40129681cc6815b8cda59 | p@chr19:40431300..40431312, - |
| 1.49e-36 | FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_9748383dc5f40129681cc6815b8cda59 | p@chr19:51883856..51883866, - |
| 1.49e-36 | FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_9748383dc5f40129681cc6815b8cda59 | p@chr7:2309320..2309348, - |
| 1.49e-36 | FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_9748383dc5f40129681cc6815b8cda59 | p@chr1:92406327..92406341, + |
| 1.49e-36 | FFCP PHASE1:Hg19::chr10:71696103..71696151,-#_9748383dc5f40129681cc6815b8cda59 | p@chr10:71696103..71696151, - |
| 1.49e-36 | FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_9748383dc5f40129681cc6815b8cda59 | p@chr15:33905298..33905312, + |
| 1.49e-36 | FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_9748383dc5f40129681cc6815b8cda59 | p6@LRRC6 |
| 1.49e-36 | FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_9748383dc5f40129681cc6815b8cda59 | p@chr21:27478988..27478996, - |
| 1.49e-36 | FFCP PHASE1:Hg19::chr6:35511496..35511503,+#_9748383dc5f40129681cc6815b8cda59 | p@chr6:35511496..35511503, + |
