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Revision as of 14:34, 14 June 2012

Name:{{{name}}}
Species:{{{sample_species}}}
Genomic View:zenbu , UCSC




Homer de novo Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged

P-value threshold: 1e-15
Matrix similarity threshold: 0.75
Information content threshold: 1.5
Minimum target frequency: 50
Minimum background percentage: -1
Total target sequences = 5327
Total background sequences = 43180

RankMotif (click to show PWM)Target hitsBackgroundP-valueBest Match/Details
and Motif File
1 9.14% 1.14%1e-264JUN.p2.SwissRegulon.nucfreq
2 11.38% 2.45%1e-209
(-4.824e+02)		SOX10_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
3 7.12% 1.28%1e-153
(-3.526e+02)		RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
4 14.68% 5.34%1e-140
(-3.229e+02)		CREB1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
5 60.12% 44.92%1e-109
(-2.510e+02)		NFYA_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
6 14.49% 6.31%1e-99
(-2.296e+02)		BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
7 26.46% 15.18%1e-98
(-2.277e+02)		E4F1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
8 15.02% 7.77%1e-69
(-1.602e+02)		RFX1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
9 25.03% 15.74%1e-67
(-1.553e+02)		SP1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
10 5.73% 2.01%1e-55
(-1.284e+02)		ATF1_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
11 5.88% 2.10%1e-55
(-1.280e+02)		NFYB_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
12 11.43% 5.88%1e-52
(-1.214e+02)		NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
13 14.31% 8.32%1e-47
(-1.083e+02)		ATF5_CREB3.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
14 4.98% 1.78%1e-46
(-1.081e+02)		RFX2_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
15 65.83% 56.15%1e-46
(-1.070e+02)		MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
16 5.01% 1.87%1e-44
(-1.018e+02)		Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
17 45.42% 36.08%1e-43
(-1.010e+02)		ATF3_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
18 3.57% 1.10%1e-41
(-9.658e+01)		ATF2.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
19 42.47% 33.66%1e-40
(-9.269e+01)		PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
20 13.91% 8.44%1e-39
(-9.111e+01)		ELK1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
21 8.04% 4.06%1e-38
(-8.841e+01)		MYB.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
22 43.56% 35.32%1e-34
(-8.012e+01)		E2F5_do_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
23 51.05% 42.61%1e-34
(-8.003e+01)		CDX1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
24 29.05% 22.01%1e-32
(-7.498e+01)		ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
25 4.41% 1.84%1e-31
(-7.364e+01)		BATF_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
26 9.31% 5.37%1e-30
(-7.093e+01)		MAFG_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
27 24.69% 18.41%1e-29
(-6.805e+01)		HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
28 25.03% 18.78%1e-28
(-6.643e+01)		BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
29 18.64% 13.45%1e-25
(-5.925e+01)		ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
30 25.25% 19.53%1e-23
(-5.516e+01)		E2F(E2F)/Cell-Cycle-Exp/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
31 22.64% 17.33%1e-22
(-5.185e+01)		MYB_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
32 48.33% 41.62%1e-22
(-5.177e+01)		SPIB.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
33 5.91% 3.25%1e-22
(-5.162e+01)		MYB.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
34 1.69% 0.49%1e-22
(-5.087e+01)		HSF2_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
35 87.66% 82.97%1e-20
(-4.812e+01)		Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
36 12.20% 8.41%1e-20
(-4.724e+01)		NRF1.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
37 49.36% 42.96%1e-20
(-4.723e+01)		TGIF1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
38 1.88% 0.62%1e-20
(-4.671e+01)		CREB1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
39 3.76% 1.81%1e-20
(-4.632e+01)		ETS:E-box/HPC7-Scl-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
40 13.67% 9.71%1e-19
(-4.582e+01)		PRGR_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
41 9.01% 5.88%1e-19
(-4.403e+01)		ZBT7B_si_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
42 50.54% 44.43%1e-18
(-4.313e+01)		TBP.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)
43 3.32% 1.60%1e-18
(-4.160e+01)		ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer
More Info/Top 5 Known Motifs
Motif File (PWM)
44 59.59% 53.74%1e-17
(-4.004e+01)		ISL1_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
45 5.43% 3.16%1e-17
(-3.975e+01)		SRBP2_f1_HM09
More Info/Top 5 Known Motifs
Motif File (PWM)
46 2.97% 1.41%1e-16
(-3.816e+01)		NFY{A,B,C}.p2.SwissRegulon.nucfreq
More Info/Top 5 Known Motifs
Motif File (PWM)


Details

Transcriptome profiling

hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}

Sample info

strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition{{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}


RNA info

sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in FF ontology

AnatomyCell type Disease

UBERON:

CL:

Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID:

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