Personal tools

UBERON:0000476: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=vertebrate_core
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
Line 20: Line 19:
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or tissue.[AAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 16:57, 26 June 2012

Name:acellular anatomical structure
Definition:"Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [CARO:MAH]
Xrefs:
links:

AAO:0010268
AEO:0000040
BILA:0000040
CARO:0000040
EHDAA2:0003040
FBbt:00007013
FMA:63863
HAO:0000040
TAO:0000382
TGMA:0001841
XAO:0003162

ZFA:0000382
Alt_id: UBERON:CARO_0000040-FBbt_00007013-FMA_63863-ZFA_0000382
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000061(anatomical structure)
disjoint_from:UBERON:0000480(anatomical group)



Children

is a:UBERON:0000920 (egg chorion),UBERON:0008198 (nail plate)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000476 (acellular anatomical structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or tissue.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.