UBERON:0001045: Difference between revisions
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|def="Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut] | |def="Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut] | ||
|xref=BILA:0000086;;BTO:0000863;;EFO:0001950;; | |xref=BILA:0000086;;BTO:0000863;;EFO:0001950;;EHDAA2:0001185;;EHDAA:983;;EMAPA:16255;;FBbt:00005383;;FMA:45617;;http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg;;MA:0001564;;ncithesaurus:Midgut;;SCTID:361410004;;TGMA:0001036;;VHOG:0000290;;XAO:0000103 | ||
|is_a=UBERON:0004921 | |is_a=UBERON:0004921 | ||
|synonym= | |synonym="mesenteron" RELATED LATIN [Wikipedia:Midgut] | ||
|comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. | |comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. | ||
|alt_id=UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103 | |alt_id=UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103 | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=developmental_classification;;uberon_slim | |subset=developmental_classification;;uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 16:58, 26 June 2012
| Name: | midgut | ||
|---|---|---|---|
| Definition: | "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut] | ||
| Xrefs: |
| ||
| Synonyms: | "mesenteron" RELATED LATIN [Wikipedia:Midgut] | ||
| Comments: | Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. | ||
| Alt_id: | UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103 | ||
| Subset: |
developmental_classification uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|
Children
| develops from: | UBERON:0001153 (caecum),UBERON:0001154 (vermiform appendix),UBERON:0003923 (dorsal pancreatic bud) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001045 (midgut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_5e39c99b5f6e4e8aadfe36fada92f854 | p30@RPRD1B |
| 9.37e-99 | FFCP PHASE2:Hg19::chr16:23489788..23489792,-#_5e39c99b5f6e4e8aadfe36fada92f854 | p@chr16:23489788..23489792, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_5e39c99b5f6e4e8aadfe36fada92f854 | p30@RPRD1B |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:164875937..164875960,-#_5e39c99b5f6e4e8aadfe36fada92f854 | p1@ENST00000472120 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr16:23489788..23489792,-#_5e39c99b5f6e4e8aadfe36fada92f854 | p@chr16:23489788..23489792, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:164875937..164875960,-#_5e39c99b5f6e4e8aadfe36fada92f854 | p1@ENST00000472120 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:78065820..78065833,-#_d46538815297d88103aec236ed99bd17 | p27@LHFPL2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:204247050..204247059,-#_d46538815297d88103aec236ed99bd17 | p@chr1:204247050..204247059, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:6919697..6919713,-#_d46538815297d88103aec236ed99bd17 | p@chr2:6919697..6919713, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_d46538815297d88103aec236ed99bd17 | p@chr7:25361115..25361117, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:78065820..78065833,-#_d46538815297d88103aec236ed99bd17 | p27@LHFPL2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:42190911..42190925,-#_d46538815297d88103aec236ed99bd17 | p@chr19:42190911..42190925, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:37384457..37384469,-#_d46538815297d88103aec236ed99bd17 | p1@ENST00000452923 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:204247050..204247059,-#_d46538815297d88103aec236ed99bd17 | p@chr1:204247050..204247059, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr14:106090812..106090849,-#_d46538815297d88103aec236ed99bd17 | p@chr14:106090812..106090849, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:23282797..23282803,-#_d46538815297d88103aec236ed99bd17 | p37@LOXL2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr14:106091272..106091292,-#_d46538815297d88103aec236ed99bd17 | p@chr14:106091272..106091292, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:42190911..42190925,-#_d46538815297d88103aec236ed99bd17 | p@chr19:42190911..42190925, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:37384457..37384469,-#_d46538815297d88103aec236ed99bd17 | p1@ENST00000452923 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:106090812..106090849,-#_d46538815297d88103aec236ed99bd17 | p@chr14:106090812..106090849, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:6919697..6919713,-#_d46538815297d88103aec236ed99bd17 | p@chr2:6919697..6919713, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:23282797..23282803,-#_d46538815297d88103aec236ed99bd17 | p37@LOXL2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:106091272..106091292,-#_d46538815297d88103aec236ed99bd17 | p@chr14:106091272..106091292, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_d46538815297d88103aec236ed99bd17 | p@chr7:25361115..25361117, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:93595014..93595015,-#_86701a0b04f581826958df6dace51ae7 | p@chr14:93595014..93595015, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:82849680..82849681,-#_86701a0b04f581826958df6dace51ae7 | p@chr4:82849680..82849681, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:44716456..44716461,+#_86701a0b04f581826958df6dace51ae7 | p@chr18:44716456..44716461, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:82849680..82849681,-#_86701a0b04f581826958df6dace51ae7 | p@chr4:82849680..82849681, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:44716456..44716461,+#_86701a0b04f581826958df6dace51ae7 | p@chr18:44716456..44716461, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:93595014..93595015,-#_86701a0b04f581826958df6dace51ae7 | p@chr14:93595014..93595015, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_2edad48e47db90ac37dd0eaa9238d4a8 | p58@LPP |
| 1.23e-66 | FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_2edad48e47db90ac37dd0eaa9238d4a8 | p43@LPP |
| 1.23e-66 | FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_2edad48e47db90ac37dd0eaa9238d4a8 | p58@LPP |
| 1.23e-66 | FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_2edad48e47db90ac37dd0eaa9238d4a8 | p43@LPP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_01ecd4ca5f2b9724cb7f9cf2f290dce1 | p@chr16:69418649..69418659, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_01ecd4ca5f2b9724cb7f9cf2f290dce1 | p2@FCRL4 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_01ecd4ca5f2b9724cb7f9cf2f290dce1 | p2@FCRL4 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_01ecd4ca5f2b9724cb7f9cf2f290dce1 | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:231068302..231068309,+#_4168482eb396a9ec3856cbddcff4a63d | p2@ENST00000441657 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:109392190..109392199,+#_4168482eb396a9ec3856cbddcff4a63d | p14@RANBP2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:145507480..145507504,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr7:145507480..145507504, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:154343190..154343236,+#_4168482eb396a9ec3856cbddcff4a63d | p@chr4:154343190..154343236, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:146980425..146980439,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr4:146980425..146980439, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:52121805..52121816,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr10:52121805..52121816, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_4168482eb396a9ec3856cbddcff4a63d | p@chr15:45950466..45950474, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:109392190..109392199,+#_4168482eb396a9ec3856cbddcff4a63d | p14@RANBP2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr1:38201159..38201166, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:75906948..75906962,+#_4168482eb396a9ec3856cbddcff4a63d | p@chr14:75906948..75906962, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_4168482eb396a9ec3856cbddcff4a63d | p@chr15:45950466..45950474, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:146980404..146980417,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr4:146980404..146980417, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr1:38201159..38201166, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:75906948..75906962,+#_4168482eb396a9ec3856cbddcff4a63d | p@chr14:75906948..75906962, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:231068302..231068309,+#_4168482eb396a9ec3856cbddcff4a63d | p2@ENST00000441657 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:145507480..145507504,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr7:145507480..145507504, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:154343190..154343236,+#_4168482eb396a9ec3856cbddcff4a63d | p@chr4:154343190..154343236, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:146980425..146980439,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr4:146980425..146980439, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:52121805..52121816,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr10:52121805..52121816, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:146980404..146980417,-#_4168482eb396a9ec3856cbddcff4a63d | p@chr4:146980404..146980417, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr16:33629600..33629613,+#_0b13ee8a2ae419890c6593bafcf25e33 | p1@AF343368 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr15:36739580..36739587,-#_0b13ee8a2ae419890c6593bafcf25e33 | p@chr15:36739580..36739587, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr15:36739580..36739587,-#_0b13ee8a2ae419890c6593bafcf25e33 | p@chr15:36739580..36739587, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr16:33629600..33629613,+#_0b13ee8a2ae419890c6593bafcf25e33 | p1@AF343368 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr9:79267432..79267452,-#_efc5bcc59ded7eea10403b05d564ed28 | p@chr9:79267432..79267452, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_efc5bcc59ded7eea10403b05d564ed28 | p24@RPRD1B |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_efc5bcc59ded7eea10403b05d564ed28 | p@chr4:150822397..150822409, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr14:106091539..106091550,-#_efc5bcc59ded7eea10403b05d564ed28 | p@chr14:106091539..106091550, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr12:31135774..31135816,+#_efc5bcc59ded7eea10403b05d564ed28 | p@chr12:31135774..31135816, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:75639773..75639782,+#_efc5bcc59ded7eea10403b05d564ed28 | p15@NEIL1 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr9:79267432..79267452,-#_efc5bcc59ded7eea10403b05d564ed28 | p@chr9:79267432..79267452, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_efc5bcc59ded7eea10403b05d564ed28 | p@chr4:150822397..150822409, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:75639773..75639782,+#_efc5bcc59ded7eea10403b05d564ed28 | p15@NEIL1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_efc5bcc59ded7eea10403b05d564ed28 | p24@RPRD1B |
| 2.42e-50 | FFCP PHASE1:Hg19::chr14:106091539..106091550,-#_efc5bcc59ded7eea10403b05d564ed28 | p@chr14:106091539..106091550, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr12:31135774..31135816,+#_efc5bcc59ded7eea10403b05d564ed28 | p@chr12:31135774..31135816, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:20985642..20985664,-#_6ef7841517115d59c05e5c365d05f903 | p16@KCNIP4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr8:119294370..119294381,+#_6ef7841517115d59c05e5c365d05f903 | p4@ENST00000366457 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:40852366..40852377,+#_6ef7841517115d59c05e5c365d05f903 | p@chr7:40852366..40852377, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_6ef7841517115d59c05e5c365d05f903 | p1@MS4A12 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:20985642..20985664,-#_6ef7841517115d59c05e5c365d05f903 | p16@KCNIP4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:40852366..40852377,+#_6ef7841517115d59c05e5c365d05f903 | p@chr7:40852366..40852377, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_6ef7841517115d59c05e5c365d05f903 | p1@MS4A12 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr8:119294370..119294381,+#_6ef7841517115d59c05e5c365d05f903 | p4@ENST00000366457 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:125634292..125634301,-#_d7f502cddc93fe26479638cc5b9f79b8 | p@chr12:125634292..125634301, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:187694215..187694226,-#_d7f502cddc93fe26479638cc5b9f79b8 | p2@ENST00000446091, p2@uc003frr.1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:40850556..40850576,+#_d7f502cddc93fe26479638cc5b9f79b8 | p@chr7:40850556..40850576, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:62809350..62809370,+#_d7f502cddc93fe26479638cc5b9f79b8 | p@chr3:62809350..62809370, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:106746150..106746153,-#_d7f502cddc93fe26479638cc5b9f79b8 | p1@IGHV3-25 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr5:78505723..78505730,+#_d7f502cddc93fe26479638cc5b9f79b8 | p@chr5:78505723..78505730, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:187694215..187694226,-#_d7f502cddc93fe26479638cc5b9f79b8 | p2@ENST00000446091, p2@uc003frr.1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:106746150..106746153,-#_d7f502cddc93fe26479638cc5b9f79b8 | p1@IGHV3-25 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr5:78505723..78505730,+#_d7f502cddc93fe26479638cc5b9f79b8 | p@chr5:78505723..78505730, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:125634292..125634301,-#_d7f502cddc93fe26479638cc5b9f79b8 | p@chr12:125634292..125634301, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:40850556..40850576,+#_d7f502cddc93fe26479638cc5b9f79b8 | p@chr7:40850556..40850576, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:62809350..62809370,+#_d7f502cddc93fe26479638cc5b9f79b8 | p@chr3:62809350..62809370, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr11:22635514..22635519,+#_a0d1074fffd3cfd16fa3c909955ca9a6 | p@chr11:22635514..22635519, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr6:135296515..135296529,-#_a0d1074fffd3cfd16fa3c909955ca9a6 | p@chr6:135296515..135296529, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr3:87454882..87454885,+#_a0d1074fffd3cfd16fa3c909955ca9a6 | p@chr3:87454882..87454885, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr8:116378848..116378855,-#_a0d1074fffd3cfd16fa3c909955ca9a6 | p@chr8:116378848..116378855, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr11:96787494..96787502,+#_a0d1074fffd3cfd16fa3c909955ca9a6 | p@chr11:96787494..96787502, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr1:56076718..56076723,+#_a0d1074fffd3cfd16fa3c909955ca9a6 | p@chr1:56076718..56076723, + |
