UBERON:0001130: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|name=vertebral column | |name=vertebral column | ||
|namespace= | |namespace= | ||
|def="." [Wikipedia:Vertebral_column] | |def="Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body." [https://sourceforge.net/tracker/?func=detail&aid=3530322&group_id=76834&atid=2257941, UBERON:cjm, Wikipedia:Vertebral_column] | ||
|xref=AAO:0000699;;AAO:0000734;;BTO:0000818;;EFO:0001369;;EHDA:10119 | |xref=AAO:0000699;;AAO:0000734;;BTO:0000818;;EFO:0001369;;EHDA:10119;;EMAPA:16666;;FMA:13478;;GAID:106;;galen:SpinalColumn;;MA:0002416;;MESH:A.02.835.232.834;;ncithesaurus:Spinal_Cord_Column;;ncithesaurus:Vertebral_Column;;NIF_Subcellular:sao1145756102;;OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA;;OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA;;SCTID:44300000;;TAO:0001559;;VHOG:0001142;;VSAO:0000185;;XAO:0003074;;ZFA:0001559 | ||
|is_a=UBERON:0000075 | |is_a=UBERON:0000075 | ||
|synonym="backbone" NARROW [FMA:13478];;"columna vertebralis | |synonym="backbone" NARROW [FMA:13478];;"columna vertebralis" RELATED [BTO:0000818];;"spinal column" RELATED [MESH:A.02.835.232.834];;"spine" BROAD [FMA:13478];;"vertebral column skeleton" NARROW [AAO:0000699] | ||
|comment= | |comment=Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton | ||
|alt_id=UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559 | |alt_id=UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559 | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:58, 26 June 2012
| Name: | vertebral column | ||
|---|---|---|---|
| Definition: | "Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body." UBERON:cjm, Wikipedia:Vertebral_column | ||
| Xrefs: |
| ||
| Synonyms: |
"backbone" NARROW [FMA:13478] "columna vertebralis" RELATED [BTO:0000818] "spinal column" RELATED [MESH:A.02.835.232.834] "spine" BROAD [FMA:13478] "vertebral column skeleton" NARROW [AAO:0000699] | ||
| Comments: | Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton | ||
| Alt_id: | UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000075(subdivision of skeletal system) |
|---|
Children
| part of: | UBERON:0001468 (intervertebral joint),UBERON:0002412 (vertebra),UBERON:0010913 (vertebral element),UBERON:0011094 (vertebra cartilage element),UBERON:0011095 (vertebra pre-cartilage condensation),UBERON:0015005 (vertebra endochondral element) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11462-119B4 (Nucleus Pulposus Cell, donor3)
- 11463-119B5 (Anulus Pulposus Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001130 (vertebral column), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.25e-162 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_064f8942c8d518be2d7e1aa05ba7dde6 | p@chr3:174737010..174737023, + |
| 1.25e-162 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_064f8942c8d518be2d7e1aa05ba7dde6 | p@chr3:174737010..174737023, + |
| 3.92e-140 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_35572683d3260e5e76fcf2643420fe90 | p4@PAX1 |
| 3.92e-140 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_35572683d3260e5e76fcf2643420fe90 | p4@PAX1 |
| 4.22e-99 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_caee173b3d911537b9c3f1175e869476 | p@chr5:30104176..30104187, - |
| 4.22e-99 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_caee173b3d911537b9c3f1175e869476 | p@chr5:30104176..30104187, - |
| 1.06e-78 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_1eec87cddf1a27370abd1044e5f42979 | p4@NKX3-2 |
| 1.06e-78 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_1eec87cddf1a27370abd1044e5f42979 | p4@NKX3-2 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_be6ad71e01cf3cb7640e17d4c841bf76 | p@chr9:114135497..114135526, - |
| 2.52e-71 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_be6ad71e01cf3cb7640e17d4c841bf76 | p@chr9:114135497..114135526, - |
| 7.4e-71 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_84ac457b9863252ccb3ed92d596842d3 | p@chr2:241897125..241897142, - |
| 7.4e-71 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_84ac457b9863252ccb3ed92d596842d3 | p@chr2:241897125..241897142, - |
| 6.33e-70 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_3227e32b1653790ce02a24830d874a07 | p@chr3:80727046..80727051, - |
| 6.33e-70 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_3227e32b1653790ce02a24830d874a07 | p@chr3:80727046..80727051, - |
| 4.8e-67 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_661ebfea7bfcc412bb6636a613b3d4db | p15@SNED1 |
| 4.8e-67 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_661ebfea7bfcc412bb6636a613b3d4db | p15@SNED1 |
| 1.24e-66 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_eadbd0d9c7e97252fb06c29825383587 | p20@CAPZB |
| 1.24e-66 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_eadbd0d9c7e97252fb06c29825383587 | p20@CAPZB |
| 1.26e-62 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_7e1ecec5701489e1c3c3f0015ecaa53f | p@chr1:19778678..19778689, - |
| 1.26e-62 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_7e1ecec5701489e1c3c3f0015ecaa53f | p@chr1:19778678..19778689, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_65b4eecbc31f1d6234b8b3920d206fd5 | p@chr2:241897189..241897221, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_65b4eecbc31f1d6234b8b3920d206fd5 | p@chr2:241897189..241897221, - |
| 1.55e-57 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_ad752c05861540ef1988b1852853aeb6 | p1@uc010aki.1 |
| 1.55e-57 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_ad752c05861540ef1988b1852853aeb6 | p1@uc010aki.1 |
| 4.09e-56 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_c246049be491788542845103acfc675e | p6@SIX4 |
| 4.09e-56 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_c246049be491788542845103acfc675e | p6@SIX4 |
| 3.74e-53 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_507cf5ec7703e69e8f69fcb1ac3edd45 | p3@uc010aki.1 |
| 3.74e-53 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_507cf5ec7703e69e8f69fcb1ac3edd45 | p3@uc010aki.1 |
| 1.15e-51 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_1c7c681852de2671847350a0bbd0844b | p3@PAX1 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_1c7c681852de2671847350a0bbd0844b | p3@PAX1 |
| 2.3e-51 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_635dc743d1c93e4b5aed819ac97aeca4 | p@chr10:81923378..81923389, - |
| 2.3e-51 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_635dc743d1c93e4b5aed819ac97aeca4 | p@chr10:81923378..81923389, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_b53efd6dcf762201cccf54c5e3c24110 | p@chr2:12248310..12248334, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_b53efd6dcf762201cccf54c5e3c24110 | p@chr2:12248310..12248334, - |
| 8.0e-51 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_913887ee090bd83e430695e4f9ae7556 | p19@HDAC9 |
| 8.0e-51 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_913887ee090bd83e430695e4f9ae7556 | p19@HDAC9 |
| 5.06e-49 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_3354b5c7dc83a002093eab52f99e640e | p@chr7:158224707..158224729, - |
| 5.06e-49 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_3354b5c7dc83a002093eab52f99e640e | p@chr7:158224707..158224729, - |
| 5.24e-48 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_5dd9b3d721f7596d01b8c900ef070f7e | p@chr1:65888177..65888194, + |
| 5.24e-48 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_5dd9b3d721f7596d01b8c900ef070f7e | p@chr1:65888177..65888194, + |
| 2.98e-45 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_b0ab89a934a2f0fadab049b66ab87642 | p3@NKX3-2 |
| 2.98e-45 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_b0ab89a934a2f0fadab049b66ab87642 | p3@NKX3-2 |
| 2.92e-44 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_3da5f3a6ebb74b1a32776ccedb60d137 | p1@MGC27382 |
| 2.92e-44 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_3da5f3a6ebb74b1a32776ccedb60d137 | p1@MGC27382 |
| 1.71e-43 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_74e99504b944474bd068a6b37d7347c0 | p18@HDAC9 |
| 1.71e-43 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_74e99504b944474bd068a6b37d7347c0 | p18@HDAC9 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_4529454966f8b2262dd1ab4c480c83fa | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_4529454966f8b2262dd1ab4c480c83fa | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_4529454966f8b2262dd1ab4c480c83fa | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_4529454966f8b2262dd1ab4c480c83fa | p@chr9:33028063..33028067, - |
| 1.64e-40 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_00857bc2ac7a1ff8a42a97a75cd9eaa0 | p1@PAX1 |
| 1.64e-40 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_00857bc2ac7a1ff8a42a97a75cd9eaa0 | p1@PAX1 |
| 1.81e-40 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_d19065103c6641805c1f98becbb5ad9e | p5@PTGFR |
| 1.81e-40 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_d19065103c6641805c1f98becbb5ad9e | p5@PTGFR |
| 2.13e-40 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_025b7c41ad51a94f29e84b44b25b7f79 | p@chr2:241897363..241897398, + |
| 2.13e-40 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_025b7c41ad51a94f29e84b44b25b7f79 | p@chr2:241897363..241897398, + |
| 3.04e-39 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_1c3507a01750a630d392b7e1c7e3892a | p2@PAX1 |
| 3.04e-39 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_1c3507a01750a630d392b7e1c7e3892a | p2@PAX1 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_69ccdeb9e893850fddcee4e082bb75dd | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_69ccdeb9e893850fddcee4e082bb75dd | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_69ccdeb9e893850fddcee4e082bb75dd | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_69ccdeb9e893850fddcee4e082bb75dd | p@chr5:140887761..140887777, + |
| 1.24e-38 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_3637856b1cf72d4938e47cdbb18761f0 | p4@NUP54 |
| 1.24e-38 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_3637856b1cf72d4938e47cdbb18761f0 | p4@NUP54 |
| 2.08e-38 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_3bc61b66ccb84223a0407212c3abb86e | p@chr2:241938405..241938416, + |
| 2.08e-38 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_3bc61b66ccb84223a0407212c3abb86e | p@chr2:241938405..241938416, + |
| 3.34e-38 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_9a2cfb4245b46f146625c16a1b032a65 | p1@NKX3-2 |
| 3.34e-38 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_9a2cfb4245b46f146625c16a1b032a65 | p1@NKX3-2 |
| 3.68e-38 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_12317a54f4b535c27cf3a9ba75044e01 | p10@SYNJ2 |
| 3.68e-38 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_12317a54f4b535c27cf3a9ba75044e01 | p10@SYNJ2 |
| 5.39e-38 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_a1db76c06fc96d5930ec6d4678fbd41c | p@chr9:16138889..16138902, - |
| 5.39e-38 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_a1db76c06fc96d5930ec6d4678fbd41c | p@chr9:16138889..16138902, - |
| 8.66e-38 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_72d4267c606ee356433bc0e98b34de13 | p2@ENST00000518706 |
| 8.66e-38 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_72d4267c606ee356433bc0e98b34de13 | p2@ENST00000518706 |
| 2.96e-37 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_8ff60ac03bd3654405d85872ecc3d775 | p1@ENST00000436845 |
| 2.96e-37 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_8ff60ac03bd3654405d85872ecc3d775 | p1@ENST00000436845 |
| 6.92e-37 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_d0f5d7b414472c75521c3d4b4b0f2dc1 | p12@CDK5RAP2 |
| 6.92e-37 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_d0f5d7b414472c75521c3d4b4b0f2dc1 | p12@CDK5RAP2 |
| 3.28e-36 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_8485234a4dfc90a5bd441a6c18d63b48 | p1@ENST00000413519 |
| 3.28e-36 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_8485234a4dfc90a5bd441a6c18d63b48 | p1@ENST00000413519 |
| 9.62e-35 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_809c1c9946ba1b06fbb27fba356212eb | p4@PAX9 |
| 9.62e-35 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_809c1c9946ba1b06fbb27fba356212eb | p4@PAX9 |
| 1.8e-34 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_2d31feb1df87f3077589543ad87ec909 | p@chr7:100202784..100202796, - |
| 1.8e-34 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_2d31feb1df87f3077589543ad87ec909 | p@chr7:100202784..100202796, - |
| 3.69e-34 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_c34e8a5cc94493bffacfe3597dde5c6f | p8@HOXC6 |
| 3.69e-34 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_c34e8a5cc94493bffacfe3597dde5c6f | p8@HOXC6 |
| 5.52e-34 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_9f911177112e0b7b0ae7f13f3bcce1c3 | p6@CCDC86 |
| 5.52e-34 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_9f911177112e0b7b0ae7f13f3bcce1c3 | p6@CCDC86 |
| 1.43e-33 | FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_a55bc64bf561b8874941c7b07e923764 | p@chr20:21695435..21695452, + |
| 1.43e-33 | FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_a55bc64bf561b8874941c7b07e923764 | p@chr20:21695435..21695452, + |
| 5.36e-33 | FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_3b8490589706574bfc67723df156b900 | p@chr16:70795228..70795237, + |
| 5.36e-33 | FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_3b8490589706574bfc67723df156b900 | p@chr16:70795228..70795237, + |
| 1.05e-32 | FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_4bb71a50685ec7e087e3c141bda1fa7a | p@chr3:158384350..158384362, - |
| 1.05e-32 | FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_4bb71a50685ec7e087e3c141bda1fa7a | p@chr3:158384350..158384362, - |
| 1.7e-32 | FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_8abdb36bfff835f146d50b1edc91727a | p9@CYTIP |
| 1.7e-32 | FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_8abdb36bfff835f146d50b1edc91727a | p9@CYTIP |
| 2.34e-32 | FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_dc4b73bf0183f38abc1fcfcb4480eddb | p@chr18:12012068..12012098, + |
| 2.34e-32 | FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_dc4b73bf0183f38abc1fcfcb4480eddb | p@chr18:12012068..12012098, + |
| 2.79e-31 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_65d7c99a4b1bc94a2c1ca995798351e7 | p1@ENST00000555639 |
| 2.79e-31 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_65d7c99a4b1bc94a2c1ca995798351e7 | p1@ENST00000555639 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
